Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17782 Corylus avellana HOM05D015223 ORTHO05D010674 0.0e+00 3546.1 1872 100.0
Cfa018307 Carpinus fangiana HOM05D015223 ORTHO05D010674 0.0e+00 2936.4 1896 85.2
CiPaw.16G010100 Carya illinoinensis HOM05D015223 ORTHO05D010674 0.0e+00 1251.1 2215 42.9
Prupe.8G035200 Prunus persica HOM05D012764 ORTHO05D017940 2.8e-75 288.9 2067 26.3
MD05G1029500 Malus domestica HOM05D012764 ORTHO05D017940 1.6e-65 256.5 877 34.2
Atru.chr13.2071 Acer truncatum HOM05D036810 ORTHO05D030759 3.6e-54 218.8 1375 26.3
Thecc.08G155200 Theobroma cacao HOM05D013130 ORTHO05D022454 4.4e-52 211.8 851 30.1
Duzib116G0432 Durio zibethinus HOM05D013130 ORTHO05D022454 2.0e-49 203.0 894 30.0
Potri.005G194350 Populus trichocarpa HOM05D015223 ORTHO05D037420 9.8e-44 184.1 1842 24.0
Potri.002G066450 Populus trichocarpa HOM05D015223 ORTHO05D037420 9.5e-39 167.5 1103 26.7
TAR628G0624 Trochodendron aralioides HOM05D013130 ORTHO05D010674 4.1e-34 152.1 950 28.5
Dinv41063 Davidia involucrata HOM05D011323 ORTHO05D010674 8.6e-32 144.4 523 33.3
Dinv41064 Davidia involucrata HOM05D016043 ORTHO05D015789 1.8e-29 136.7 631 27.9
Dinv25882 Davidia involucrata HOM05D016043 ORTHO05D010674 1.5e-28 133.7 790 26.1
Gohir.A05G244401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 2.0e-28 133.3 564 30.3
Gohir.D05G245401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 2.4e-26 126.3 563 30.6
Manes.02G181350 Manihot esculenta HOM05D015223 ORTHO05D010674 3.9e-24 119.0 600 28.0
Gorai.009G255200 Gossypium raimondii HOM05D013130 ORTHO05D022454 4.3e-23 115.5 563 29.8
CANSAT25G2759 Cannabis sativa HOM05D013130 ORTHO05D010674 1.5e-20 107.1 296 36.1
Sabra02G0052900 Salix brachista HOM05D015223 ORTHO05D037420 1.5e-20 107.1 1838 23.0
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 5.8e-20 105.1 452 30.3
RcHm_v2.0_Chr6g0274911 Rosa chinensis HOM05D012764 ORTHO05D017940 6.4e-19 101.7 1214 23.9
RcHm_v2.0_Chr6g0274831 Rosa chinensis HOM05D012764 ORTHO05D010674 3.5e-17 95.9 189 38.6
Nitab4.5_0001344g0010 Nicotiana tabacum HOM05D011323 ORTHO05D010674 2.3e-16 93.2 309 29.4
PGR044G2651 Punica granatum HOM05D012764 ORTHO05D010674 5.1e-16 92.0 574 27.2
AUR62040588 Chenopodium quinoa HOM05D018884 ORTHO05D010674 6.6e-16 91.7 144 41.0
FvH4_2g13370 Fragaria vesca HOM05D012764 ORTHO05D017940 1.1e-15 90.9 174 37.4
FAN20G3084 Fragaria x ananassa HOM05D012764 ORTHO05D017940 1.5e-15 90.5 282 31.6
FAN24G2902 Fragaria x ananassa HOM05D012764 ORTHO05D017940 1.5e-15 90.5 220 33.2
AUR62026679 Chenopodium quinoa HOM05D018884 ORTHO05D010674 1.9e-15 90.1 81 56.8
CSS0012606 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 5.6e-15 88.6 84 57.1
Oeu051274.3 Olea europaea HOM05D027784 ORTHO05D010674 1.2e-14 87.4 707 26.6
Actinidia10638 Actinidia chinensis HOM05D016043 ORTHO05D015789 2.1e-14 86.7 423 28.8
Lj7A375T60 Lonicera japonica HOM05D011323 ORTHO05D010674 8.1e-14 84.7 181 35.4
ECA247G3667 Erigeron canadensis HOM05D011323 ORTHO05D010674 1.1e-13 84.3 460 25.2
FAN27G3106 Fragaria x ananassa HOM05D012764 ORTHO05D017940 1.4e-13 84.0 281 31.0
FAN24G0895 Fragaria x ananassa HOM05D012764 ORTHO05D010674 8.9e-13 81.3 186 34.9
Atru.chr13.2072 Acer truncatum HOM05D015223 ORTHO05D030758 1.2e-12 80.9 217 34.6
Cc10_g15040 Coffea canephora HOM05D011323 ORTHO05D010674 1.2e-12 80.9 490 27.1
Dinv25881 Davidia involucrata HOM05D016043 ORTHO05D015789 1.2e-12 80.9 460 26.5
FvH4_2g13350 Fragaria vesca HOM05D012764 ORTHO05D010674 1.2e-12 80.9 186 34.9
EL10Ac1g01580 Beta vulgaris HOM05D018884 ORTHO05D010674 2.0e-12 80.1 155 38.7
DCAR_001148 Daucus carota HOM05D033900 ORTHO05D010674 4.4e-12 79.0 83 47.0
Peaxi162Scf00079g00245 Petunia axillaris HOM05D011323 ORTHO05D010674 1.7e-11 77.0 431 29.5
SGA_v2.0_scaffold108G30881 Striga asiatica HOM05D001241 ORTHO05D010674 1.9e-10 73.6 198 32.8
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 4.1e-10 72.4 83 50.6
Thhalv10018017m.g Eutrema salsugineum HOM05D010491 ORTHO05D012559 2.7e-09 69.7 80 51.2
THA.LOC104812032 Tarenaya hassleriana HOM05D010491 ORTHO05D010674 3.5e-09 69.3 155 36.1
MSTRG.1096 Avicennia marina HOM05D027784 ORTHO05D010674 1.7e-08 67.0 986 25.2
Nn1g06053 Nelumbo nucifera HOM05D011323 ORTHO05D010674 1.7e-08 67.0 641 24.5
Nitab4.5_0001187g0020 Nicotiana tabacum HOM05D011323 ORTHO05D010674 3.9e-08 65.9 629 22.1
Glyma.02G080700 Glycine max HOM05D028233 ORTHO05D015681 1.5e-07 63.9 36 77.8
Phvul.004G092800 Phaseolus vulgaris HOM05D028233 ORTHO05D015681 1.5e-07 63.9 37 78.4
Sp5g31880 Schrenkiella parvula HOM05D010491 ORTHO05D012559 1.5e-07 63.9 166 31.3
Glyma.16G165600 Glycine max HOM05D028233 ORTHO05D015681 2.5e-07 63.2 35 77.1
COL.COLO4_29877 Corchorus olitorius HOM05D013130 ORTHO05D022454 4.3e-07 62.4 1142 22.2
VMungo0464G2099 Vigna mungo HOM05D028233 ORTHO05D012559 5.6e-07 62.0 37 75.7
AL2G36890 Arabidopsis lyrata HOM05D010491 ORTHO05D012559 9.6e-07 61.2 412 27.9
FAN15G3692 Fragaria x ananassa HOM05D012764 ORTHO05D017940 9.6e-07 61.2 538 27.5
arahy.Tifrunner.gnm1.ann1.UU4M73 Arachis hypogaea HOM05D053442 ORTHO05D010674 2.1e-06 60.1 78 46.2
CARHR070280 Cardamine hirsuta HOM05D010491 ORTHO05D012559 4.7e-06 58.9 338 25.1


User provided reference genes

Program Settings