Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17777 Corylus avellana HOM05D004894 ORTHO05D005689 2.7e-178 628.6 339 100.0
Haze_17792 Corylus avellana HOM05D004894 ORTHO05D005689 5.3e-81 305.4 172 94.2
Cfa018298 Carpinus fangiana HOM05D004894 ORTHO05D005689 7.6e-80 301.6 172 93.6
CiPaw.16G009500 Carya illinoinensis HOM05D004894 ORTHO05D005689 3.6e-45 186.4 166 60.8
QL02p037592 Quercus lobata HOM05D004894 ORTHO05D005689 8.0e-45 185.3 168 60.7
QL02p038562 Quercus lobata HOM05D004894 ORTHO05D005689 8.0e-45 185.3 168 60.7
QL02p038558 Quercus lobata HOM05D004894 ORTHO05D005689 4.4e-43 179.5 154 60.4
QL02p037589 Quercus lobata HOM05D004894 ORTHO05D005689 6.3e-42 175.6 183 53.6
Cfa018296 Carpinus fangiana HOM05D004894 ORTHO05D005689 2.6e-40 170.2 139 71.2
MD10G1032700 Malus domestica HOM05D004894 ORTHO05D005689 4.2e-38 162.9 159 57.2
Ciclev10003770m.g Citrus clementina HOM05D004894 ORTHO05D005689 1.7e-34 151.0 176 48.9
MD10G1032600 Malus domestica HOM05D004894 ORTHO05D005689 1.7e-34 151.0 154 53.2
CiPaw.15G014000 Carya illinoinensis HOM05D004894 ORTHO05D005689 1.1e-33 148.3 161 54.7
Prupe.8G038100 Prunus persica HOM05D004894 ORTHO05D005689 1.8e-33 147.5 151 52.3
RcHm_v2.0_Chr6g0274541 Rosa chinensis HOM05D004894 ORTHO05D009560 4.5e-32 142.9 165 49.7
Ciclev10003123m.g Citrus clementina HOM05D004894 ORTHO05D005689 1.1e-30 138.3 149 51.7
Haze_17791 Corylus avellana HOM05D004894 ORTHO05D009560 6.8e-28 129.0 183 43.2
Cfa018299 Carpinus fangiana HOM05D004894 ORTHO05D005689 5.7e-27 125.9 180 43.3
MD10G1032400 Malus domestica HOM05D004894 ORTHO05D005689 2.2e-26 124.0 127 53.5
Cfa018297 Carpinus fangiana HOM05D004894 ORTHO05D005689 4.1e-25 119.8 153 43.8
Sabra13G0011900 Salix brachista HOM05D004894 ORTHO05D009560 1.0e-23 115.2 181 39.2
TWI34G1211 Tripterygium wilfordii HOM05D004894 ORTHO05D005689 5.0e-23 112.8 177 39.0
Ciclev10002638m.g Citrus clementina HOM05D004894 ORTHO05D005689 6.1e-21 105.9 177 38.4
Psat1g100960 Pisum sativum HOM05D004894 ORTHO05D005689 2.3e-20 104.0 162 40.1
FAN24G0571 Fragaria x ananassa HOM05D004894 ORTHO05D005689 6.8e-20 102.4 131 45.0
FAN27G2788 Fragaria x ananassa HOM05D004894 ORTHO05D009560 2.0e-19 100.9 131 43.5
TPR.G9011 Trifolium pratense HOM05D004894 ORTHO05D005689 1.7e-18 97.8 164 37.2
FvH4_2g13220 Fragaria vesca HOM05D004894 ORTHO05D005689 2.2e-18 97.4 143 41.3
Lalb_Chr03g0035461 Lupinus albus HOM05D004894 ORTHO05D005689 2.2e-18 97.4 162 36.4
TPR.G12635 Trifolium pratense HOM05D004894 ORTHO05D005689 2.2e-18 97.4 167 35.9
Lalb_Chr02g0141491 Lupinus albus HOM05D004894 ORTHO05D005689 2.8e-18 97.1 145 40.0
FAN24G3270 Fragaria x ananassa HOM05D004894 ORTHO05D005689 1.1e-17 95.1 142 40.8
SHI09078 Sapria himalayana HOM05D004894 ORTHO05D005689 1.1e-17 95.1 158 38.6
Glyma.16G164600 Glycine max HOM05D004894 ORTHO05D005689 1.4e-17 94.7 163 35.0
TPR.G12588 Trifolium pratense HOM05D000036 ORTHO05D005689 2.4e-17 94.0 273 26.7
arahy.Tifrunner.gnm1.ann1.VH20NJ Arachis hypogaea HOM05D004894 ORTHO05D005689 4.1e-17 93.2 172 35.5
Phvul.007G082200 Phaseolus vulgaris HOM05D004894 ORTHO05D005689 1.2e-16 91.7 181 32.6
Lj2g0017521 Lotus japonicus HOM05D004894 ORTHO05D005689 2.0e-16 90.9 160 34.4
Lj5g0011961 Lotus japonicus HOM05D004894 ORTHO05D005689 2.0e-16 90.9 165 37.0
Glyma.20G168700 Glycine max HOM05D004894 ORTHO05D005689 2.7e-16 90.5 182 35.2
Lalb_Chr03g0035451 Lupinus albus HOM05D004894 ORTHO05D005689 4.5e-16 89.7 160 33.1
FAN20G3174 Fragaria x ananassa HOM05D004894 ORTHO05D005689 5.9e-16 89.4 160 39.4
Lalb_Chr03g0035551 Lupinus albus HOM05D004894 ORTHO05D005689 5.9e-16 89.4 164 39.0
Lalb_Chr19g0130151 Lupinus albus HOM05D004894 ORTHO05D005689 7.8e-16 89.0 159 36.5
Lalb_Chr19g0130161 Lupinus albus HOM05D004894 ORTHO05D005689 7.8e-16 89.0 159 36.5
Medtr4g062290 Medicago truncatula HOM05D004894 ORTHO05D005689 7.8e-16 89.0 167 33.5
Medtr6g038010 Medicago truncatula HOM05D004894 ORTHO05D005689 7.8e-16 89.0 164 37.2
Psat6g191360 Pisum sativum HOM05D004894 ORTHO05D005689 1.7e-15 87.8 144 33.3
Potri.013G013300 Populus trichocarpa HOM05D004894 ORTHO05D005689 2.9e-15 87.0 175 35.4
VMungo0720G1196 Vigna mungo HOM05D004894 ORTHO05D005689 3.9e-15 86.7 167 34.1
Ciclev10003802m.g Citrus clementina HOM05D004894 ORTHO05D005689 5.0e-15 86.3 180 36.1
arahy.Tifrunner.gnm1.ann1.P5DTJP Arachis hypogaea HOM05D004894 ORTHO05D005689 6.6e-15 85.9 153 35.3
Psat6g191520 Pisum sativum HOM05D004894 ORTHO05D005689 6.6e-15 85.9 144 31.9
Psat6g191960 Pisum sativum HOM05D004894 ORTHO05D005689 6.6e-15 85.9 144 31.9
Ca_10673_v3 Cicer arietinum L. HOM05D004894 ORTHO05D005689 8.6e-15 85.5 170 31.8
Lalb_Chr03g0035581 Lupinus albus HOM05D004894 ORTHO05D005689 1.9e-14 84.3 166 37.3
Lalb_Chr14g0362611 Lupinus albus HOM05D004894 ORTHO05D005689 1.9e-14 84.3 156 32.7
Glyma.02G080000 Glycine max HOM05D004894 ORTHO05D005689 2.5e-14 84.0 167 32.3
VMungo0464G0707 Vigna mungo HOM05D004894 ORTHO05D005689 2.5e-14 84.0 163 34.4
PSO732G0092 Papaver somniferum HOM05D008403 ORTHO05D010317 3.3e-14 83.6 349 27.5
VMungo0720G2185 Vigna mungo HOM05D004894 ORTHO05D005689 3.3e-14 83.6 173 30.6
Psat6g191440 Pisum sativum HOM05D004894 ORTHO05D005689 4.3e-14 83.2 130 33.8
Glyma.10G223100 Glycine max HOM05D004894 ORTHO05D005689 9.5e-14 82.0 171 34.5
PGR042G1870 Punica granatum HOM05D027166 ORTHO05D022406 9.5e-14 82.0 170 38.2
Psat7g222760 Pisum sativum HOM05D004894 ORTHO05D005689 1.6e-13 81.3 165 31.5
Lalb_Chr19g0130051 Lupinus albus HOM05D004894 ORTHO05D005689 2.8e-13 80.5 163 31.3
Lalb_Chr19g0130071 Lupinus albus HOM05D004894 ORTHO05D005689 2.8e-13 80.5 163 31.3
Glyma.10G223000 Glycine max HOM05D004894 ORTHO05D005689 3.6e-13 80.1 184 31.0
Phvul.007G082100 Phaseolus vulgaris HOM05D004894 ORTHO05D005689 3.6e-13 80.1 170 31.2
Atru.chr13.2013 Acer truncatum HOM05D004894 ORTHO05D005689 1.0e-12 78.6 172 33.1
Thecc.08G156900 Theobroma cacao HOM05D007679 ORTHO05D009560 1.0e-12 78.6 148 33.8
Glyma.10G140100 Glycine max HOM05D004894 ORTHO05D005689 1.8e-12 77.8 164 31.1
Phvul.008G271200 Phaseolus vulgaris HOM05D004894 ORTHO05D005689 3.1e-12 77.0 172 32.6
VMungo0647G0768 Vigna mungo HOM05D004894 ORTHO05D005689 8.9e-12 75.5 177 32.2
PGR042G2832 Punica granatum HOM05D027166 ORTHO05D005689 1.2e-11 75.1 166 27.7
Cpa.g.sc49.90 Carica papaya HOM05D007679 ORTHO05D009560 1.5e-11 74.7 158 32.9
Glyma.02G263100 Glycine max HOM05D004894 ORTHO05D005689 1.5e-11 74.7 139 33.1
Glyma.02G262600 Glycine max HOM05D004894 ORTHO05D005689 2.0e-11 74.3 139 33.1
Glyma.02G262800 Glycine max HOM05D004894 ORTHO05D005689 2.0e-11 74.3 139 33.1
Glyma.02G262900 Glycine max HOM05D004894 ORTHO05D005689 2.0e-11 74.3 139 33.1
Glyma.02G263000 Glycine max HOM05D004894 ORTHO05D005689 2.0e-11 74.3 139 33.1
Phvul.004G091800 Phaseolus vulgaris HOM05D004894 ORTHO05D005689 2.0e-11 74.3 169 30.8
Duzib041G0061 Durio zibethinus HOM05D007679 ORTHO05D009560 2.6e-11 73.9 150 34.0
Lalb_Chr19g0130061 Lupinus albus HOM05D004894 ORTHO05D005689 3.4e-11 73.6 164 32.9
Thecc.08G157300 Theobroma cacao HOM05D007679 ORTHO05D009560 5.8e-11 72.8 174 31.0
Manes.02G182301 Manihot esculenta HOM05D004894 ORTHO05D005689 7.5e-11 72.4 171 32.2
TPR.G36348 Trifolium pratense HOM05D004894 ORTHO05D005689 7.5e-11 72.4 161 31.7
Nn1g08310 Nelumbo nucifera HOM05D008403 ORTHO05D010317 9.8e-11 72.0 164 34.8
Ciclev10003694m.g Citrus clementina HOM05D004894 ORTHO05D005689 1.3e-10 71.6 146 35.6
TPR.G36349 Trifolium pratense HOM05D004894 ORTHO05D005689 2.2e-10 70.9 150 33.3
Cpa.g.sc49.91 Carica papaya HOM05D007679 ORTHO05D009560 2.9e-10 70.5 149 31.5
Psat4g130720 Pisum sativum HOM05D004894 ORTHO05D005689 2.9e-10 70.5 159 31.4
Psat7g222800 Pisum sativum HOM05D004894 ORTHO05D005689 3.7e-10 70.1 104 36.5
Aqoxy4G02379 Aquilegia oxysepala HOM05D008403 ORTHO05D010317 6.4e-10 69.3 180 32.2
Duzib268G1784 Durio zibethinus HOM05D008403 ORTHO05D010317 1.1e-09 68.6 153 33.3
Psat6g191560 Pisum sativum HOM05D004894 ORTHO05D005689 1.1e-09 68.6 104 35.6
THA.LOC104824471 Tarenaya hassleriana HOM05D001445 ORTHO05D001261 1.1e-09 68.6 181 32.6
TPR.G12614 Trifolium pratense HOM05D004894 ORTHO05D005689 1.9e-09 67.8 160 31.2
Ah.05g179460 Amaranthus hybridus HOM05D001445 ORTHO05D001261 3.2e-09 67.0 167 35.9
Oeu046059.1 Olea europaea HOM05D011489 ORTHO05D014472 3.2e-09 67.0 187 29.9
TPR.G17037 Trifolium pratense HOM05D004894 ORTHO05D005689 4.1e-09 66.6 117 32.5
Haze_04119 Corylus avellana HOM05D014310 ORTHO05D003404 5.4e-09 66.2 276 29.3
Psat6g191480 Pisum sativum HOM05D004894 ORTHO05D005689 7.0e-09 65.9 104 33.7
Duzib093G1264 Durio zibethinus HOM05D007679 ORTHO05D009560 1.2e-08 65.1 169 30.8
MBI19_g05147_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 1.2e-08 65.1 164 32.9
Potri.008G013400 Populus trichocarpa HOM05D008403 ORTHO05D010317 2.0e-08 64.3 166 32.5
Solyc09g092170.3 Solanum lycopersicum HOM05D024866 ORTHO05D024787 2.0e-08 64.3 168 28.0
MBI19_g19942_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D010317 2.7e-08 63.9 173 32.9
Sabra08G0008100 Salix brachista HOM05D008403 ORTHO05D010317 2.7e-08 63.9 175 32.6
COL.COLO4_34260 Corchorus olitorius HOM05D007679 ORTHO05D009560 3.5e-08 63.5 152 27.6
Medtr1g098410 Medicago truncatula HOM05D004894 ORTHO05D005689 3.5e-08 63.5 144 31.2
Manes.02G182200 Manihot esculenta HOM05D004894 ORTHO05D009560 4.6e-08 63.2 147 32.0
Medtr6g037920 Medicago truncatula HOM05D004894 ORTHO05D005689 4.6e-08 63.2 165 29.7
Medtr6g037940 Medicago truncatula HOM05D004894 ORTHO05D005689 6.0e-08 62.8 175 26.9
Gohir.A05G245500 Gossypium hirsutum HOM05D007679 ORTHO05D009560 7.8e-08 62.4 169 27.8
Gorai.009G264900 Gossypium raimondii HOM05D007679 ORTHO05D009560 7.8e-08 62.4 178 30.3
MBI19_g19941_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D010317 1.0e-07 62.0 173 32.4
Gorai.009G257700 Gossypium raimondii HOM05D007679 ORTHO05D009560 1.7e-07 61.2 146 28.1
Gohir.D05G247000 Gossypium hirsutum HOM05D007679 ORTHO05D009560 3.0e-07 60.5 169 27.8
Potri.016G001600 Populus trichocarpa HOM05D008403 ORTHO05D010317 3.9e-07 60.1 126 35.7
Aa31sc47G40 Aethionema arabicum HOM05D007751 ORTHO05D009813 5.0e-07 59.7 129 33.3
Duzib041G0498 Durio zibethinus HOM05D007679 ORTHO05D009560 5.0e-07 59.7 163 30.1
Thecc.01G402600 Theobroma cacao HOM05D001445 ORTHO05D001261 5.0e-07 59.7 171 26.3
Atru.chr2.1377 Acer truncatum HOM05D008403 ORTHO05D010317 6.6e-07 59.3 114 36.8
COL.COLO4_27522 Corchorus olitorius HOM05D008403 ORTHO05D010317 6.6e-07 59.3 125 36.8
Haze_14538 Corylus avellana HOM05D030505 ORTHO05D003404 6.6e-07 59.3 249 27.3
Eucgr.E00321 Eucalyptus grandis HOM05D001445 ORTHO05D001261 6.6e-07 59.3 165 30.9
Gohir.D05G252300 Gossypium hirsutum HOM05D007679 ORTHO05D009560 6.6e-07 59.3 178 29.8
THA.LOC104799810 Tarenaya hassleriana HOM05D007751 ORTHO05D009813 6.6e-07 59.3 135 31.9
Sabra05G0027900 Salix brachista HOM05D010921 ORTHO05D013092 8.6e-07 58.9 213 30.5
BcaB04g19979 Brassica carinata HOM05D004113 ORTHO05D005233 1.1e-06 58.5 164 32.9
BcaC04g23305 Brassica carinata HOM05D004113 ORTHO05D005233 1.1e-06 58.5 151 33.1
C09p09900 Brassica napus HOM05D004113 ORTHO05D005233 1.1e-06 58.5 151 33.1
BolC9t53899H Brassica oleracea HOM05D004113 ORTHO05D005233 1.1e-06 58.5 151 33.1
Ca_26810_v3 Cicer arietinum L. HOM05D004894 ORTHO05D005689 1.1e-06 58.5 104 29.8
Medtr1g098430 Medicago truncatula HOM05D004894 ORTHO05D005689 1.1e-06 58.5 143 27.3
Potri.013G012800 Populus trichocarpa HOM05D010921 ORTHO05D013092 1.1e-06 58.5 155 31.0
A09p08750 Brassica napus HOM05D004113 ORTHO05D005233 1.5e-06 58.2 164 32.9
BraA09t36524Z Brassica rapa HOM05D004113 ORTHO05D005233 1.5e-06 58.2 164 32.9
QL04p026153 Quercus lobata HOM05D001445 ORTHO05D001261 1.5e-06 58.2 173 28.3
MSTRG.1100 Avicennia marina HOM05D011489 ORTHO05D014472 1.9e-06 57.8 153 33.3
A10p08560 Brassica napus HOM05D007751 ORTHO05D009813 1.9e-06 57.8 140 32.9
Cfa015284 Carpinus fangiana HOM05D001578 ORTHO05D001207 1.9e-06 57.8 184 29.9
PGR004G1501 Punica granatum HOM05D008403 ORTHO05D010317 1.9e-06 57.8 170 30.0
Potri.013G012733 Populus trichocarpa HOM05D010921 ORTHO05D013092 2.5e-06 57.4 154 31.2
BraSC37t46147Z Brassica rapa HOM05D007751 ORTHO05D009813 3.3e-06 57.0 140 32.9
Os12g0129100 Oryza sativa ssp. japonica HOM05D017513 ORTHO05D023018 3.3e-06 57.0 156 30.1
Psat1g101000 Pisum sativum HOM05D004894 ORTHO05D005689 3.3e-06 57.0 141 29.8
Atru.chr2.423 Acer truncatum HOM05D008403 ORTHO05D010317 4.3e-06 56.6 98 39.8
Medtr1g098200 Medicago truncatula HOM05D004894 ORTHO05D005689 5.6e-06 56.2 144 27.8
Medtr1g098400 Medicago truncatula HOM05D004894 ORTHO05D005689 5.6e-06 56.2 144 27.8
Medtr8g009300 Medicago truncatula HOM05D001445 ORTHO05D001261 5.6e-06 56.2 166 28.3
Psat4g219240 Pisum sativum HOM05D001445 ORTHO05D001261 5.6e-06 56.2 166 28.3
Rhsim02G0087900 Rhododendron simsii HOM05D008403 ORTHO05D010317 5.6e-06 56.2 128 34.4
Cpa.g.sc49.92 Carica papaya HOM05D007679 ORTHO05D009560 7.3e-06 55.8 177 26.0
Thhalv10005004m.g Eutrema salsugineum HOM05D004113 ORTHO05D005233 7.3e-06 55.8 135 30.4
Sp2g27680 Schrenkiella parvula HOM05D004113 ORTHO05D005233 7.3e-06 55.8 170 32.9
COL.COLO4_08899 Corchorus olitorius HOM05D007679 ORTHO05D009560 9.5e-06 55.5 152 26.3
Duzib205G0415 Durio zibethinus HOM05D001445 ORTHO05D001261 9.5e-06 55.5 170 27.6
Gohir.A05G251500 Gossypium hirsutum HOM05D007679 ORTHO05D009560 9.5e-06 55.5 152 27.0
Rhsim02G0088000 Rhododendron simsii HOM05D008403 ORTHO05D010317 9.5e-06 55.5 128 34.4


User provided reference genes

Program Settings