Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17653 Corylus avellana HOM05D007988 ORTHO05D009824 1.2e-147 526.6 291 100.0
CiPaw.15G029500 Carya illinoinensis HOM05D007988 ORTHO05D009824 1.2e-81 307.4 312 63.5
CiPaw.16G021200 Carya illinoinensis HOM05D007988 ORTHO05D009824 8.5e-80 301.2 315 63.8
QL09p030989 Quercus lobata HOM05D007988 ORTHO05D009824 3.4e-76 289.3 313 63.6
Ciclev10004037m.g Citrus clementina HOM05D007988 ORTHO05D009824 2.0e-73 280.0 313 61.3
Potri.002G076200 Populus trichocarpa HOM05D007988 ORTHO05D009824 3.6e-70 269.2 319 61.4
Thecc.08G135700 Theobroma cacao HOM05D007988 ORTHO05D009824 2.7e-65 253.1 313 58.5
Duzib116G0104 Durio zibethinus HOM05D007988 ORTHO05D009824 4.5e-65 252.3 315 57.8
Duzib093G1224 Durio zibethinus HOM05D007988 ORTHO05D009824 2.0e-60 236.9 318 51.6
Gohir.D05G240900 Gossypium hirsutum HOM05D007988 ORTHO05D009824 9.8e-60 234.6 328 52.7
Gorai.009G250000 Gossypium raimondii HOM05D007988 ORTHO05D009824 9.8e-60 234.6 328 52.7
Duzib041G0811 Durio zibethinus HOM05D007988 ORTHO05D009824 1.3e-59 234.2 321 54.8
Gohir.A05G239200 Gossypium hirsutum HOM05D007988 ORTHO05D009824 1.4e-58 230.7 327 53.2
Manes.02G170000 Manihot esculenta HOM05D007988 ORTHO05D009824 1.9e-58 230.3 319 53.0
Sabra05G0140800 Salix brachista HOM05D007988 ORTHO05D009824 5.0e-56 222.2 315 51.1
TAR381G0794 Trochodendron aralioides HOM05D007988 ORTHO05D009824 5.0e-56 222.2 309 56.3
TWI60G0631 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 2.5e-55 219.9 326 52.5
Prupe.1G442100 Prunus persica HOM05D007988 ORTHO05D009824 1.2e-54 217.6 310 55.2
GSVIVG01008783001 Vitis vinifera HOM05D007988 ORTHO05D009824 2.1e-54 216.9 317 56.2
COL.COLO4_33785 Corchorus olitorius HOM05D007988 ORTHO05D009824 5.2e-53 212.2 324 53.7
Atru.chr13.1616 Acer truncatum HOM05D007988 ORTHO05D009824 8.9e-53 211.5 320 53.1
CSS0046822 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 3.4e-52 209.5 303 51.5
Lj4P666T14 Lonicera japonica HOM05D007988 ORTHO05D009824 1.3e-51 207.6 311 49.8
Lj4P663T19 Lonicera japonica HOM05D007988 ORTHO05D009824 2.2e-51 206.8 311 49.2
TWI34G1662 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 3.7e-51 206.1 322 50.9
MD15G1088100 Malus domestica HOM05D007988 ORTHO05D009824 6.6e-48 195.3 326 51.5
Rhsim11G0074200 Rhododendron simsii HOM05D007988 ORTHO05D009824 1.6e-46 190.7 304 48.0
Glyma.04G244300 Glycine max HOM05D007988 ORTHO05D009824 3.7e-43 179.5 329 48.9
RcHm_v2.0_Chr6g0306951 Rosa chinensis HOM05D007988 ORTHO05D009824 1.4e-42 177.6 327 45.0
FvH4_2g35040 Fragaria vesca HOM05D007988 ORTHO05D009824 1.9e-42 177.2 320 48.4
Nn5g28477 Nelumbo nucifera HOM05D007988 ORTHO05D009824 2.4e-42 176.8 311 52.1
FAN27G1764 Fragaria x ananassa HOM05D007988 ORTHO05D009824 9.2e-42 174.9 325 48.6
Nn1g08990 Nelumbo nucifera HOM05D007988 ORTHO05D009824 1.7e-40 170.6 318 42.5
Cc10_g13460 Coffea canephora HOM05D007988 ORTHO05D009824 5.1e-40 169.1 322 48.1
Phvul.009G131400 Phaseolus vulgaris HOM05D007988 ORTHO05D009824 3.3e-39 166.4 331 46.2
Actinidia29496 Actinidia chinensis HOM05D000744 ORTHO05D000332 4.0e-37 159.5 302 47.7
Eucgr.F02525 Eucalyptus grandis HOM05D007988 ORTHO05D009824 5.2e-37 159.1 340 43.5
Lj1g0027207 Lotus japonicus HOM05D007988 ORTHO05D009824 1.7e-35 154.1 328 45.4
CANSAT25G2204 Cannabis sativa HOM05D007988 ORTHO05D009824 6.4e-35 152.1 369 37.7
Oeu022143.1 Olea europaea HOM05D007988 ORTHO05D009824 1.4e-34 151.0 330 40.0
Cpa.g.sc64.159 Carica papaya HOM05D007988 ORTHO05D009824 2.4e-34 150.2 344 45.9
Lalb_Chr10g0101461 Lupinus albus HOM05D007988 ORTHO05D009824 2.4e-34 150.2 305 45.9
Medtr3g088735 Medicago truncatula HOM05D007988 ORTHO05D009824 4.2e-34 149.4 310 49.4
FAN15G1013 Fragaria x ananassa HOM05D007988 ORTHO05D009824 1.2e-33 147.9 216 48.6
Glyma.06G119000 Glycine max HOM05D007988 ORTHO05D009824 1.2e-33 147.9 338 45.3
VMungo1309G2256 Vigna mungo HOM05D007988 ORTHO05D009824 7.8e-33 145.2 323 45.5
Ca_16619_v3 Cicer arietinum L. HOM05D007988 ORTHO05D009824 1.0e-32 144.8 315 47.0
Dinv37735 Davidia involucrata HOM05D007988 ORTHO05D009824 3.0e-32 143.3 207 47.3
Sed0016946 Sechium edule HOM05D007988 ORTHO05D009824 6.6e-32 142.1 300 38.0
TPR.G6352 Trifolium pratense HOM05D007988 ORTHO05D009824 2.8e-30 136.7 315 46.7
Psat0s3071g0240 Pisum sativum HOM05D007988 ORTHO05D009824 2.4e-29 133.7 228 45.2
HanXRQChr09g0256671 Helianthus annuus HOM05D007988 ORTHO05D009824 2.0e-28 130.6 303 38.9
SGA_v2.0_scaffold52G18904 Striga asiatica HOM05D007988 ORTHO05D009824 2.9e-27 126.7 301 41.5
arahy.Tifrunner.gnm1.ann1.GX31L7 Arachis hypogaea HOM05D007988 ORTHO05D009824 1.4e-26 124.4 314 44.9
arahy.Tifrunner.gnm1.ann1.1JY9DA Arachis hypogaea HOM05D007988 ORTHO05D009824 3.2e-26 123.2 313 43.8
FAN20G0590 Fragaria x ananassa HOM05D007988 ORTHO05D009824 5.1e-24 115.9 153 51.6
MBI06_g32176_MAGBIO Magnolia biondii HOM05D007988 ORTHO05D009824 1.9e-23 114.0 346 39.3
ECA232G2067 Erigeron canadensis HOM05D007988 ORTHO05D009824 2.5e-23 113.6 309 41.4
CSS0018515 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 3.3e-23 113.2 152 53.9
MELO3C008455.2 Cucumis melo HOM05D007988 ORTHO05D009824 2.1e-22 110.5 310 38.1
EL10Ac1g01385 Beta vulgaris HOM05D007988 ORTHO05D009824 6.2e-22 109.0 354 38.1
AUR62007686 Chenopodium quinoa HOM05D007988 ORTHO05D009824 1.8e-21 107.5 352 37.5
CsaV3_6G031310 Cucumis sativus L. HOM05D007988 ORTHO05D009824 3.4e-20 103.2 291 35.7
Sed0000785 Sechium edule HOM05D007988 ORTHO05D009824 1.3e-19 101.3 170 49.4
AT1G21510 Arabidopsis thaliana HOM05D012069 ORTHO05D009824 2.2e-19 100.5 332 33.4
Lalb_Chr04g0253601 Lupinus albus HOM05D007988 ORTHO05D009824 2.9e-19 100.1 153 46.4
AL1G34650 Arabidopsis lyrata HOM05D012069 ORTHO05D009824 6.4e-19 99.0 339 31.6
CAN.G46.16 Capsicum annuum HOM05D007988 ORTHO05D009824 1.1e-18 98.2 338 37.0
THA.LOC104813286 Tarenaya hassleriana HOM05D012069 ORTHO05D009824 1.1e-18 98.2 335 37.0
Migut.C01082 Erythranthe guttata HOM05D007988 ORTHO05D009824 1.9e-18 97.4 324 35.8
ClCG08G006150 Citrullus lanatus HOM05D007988 ORTHO05D009824 1.6e-17 94.4 301 38.2
Hund26769 Selenicereus undatus HOM05D007988 ORTHO05D009824 2.1e-17 94.0 361 32.7
Sopen04g026140 Solanum pennellii HOM05D007988 ORTHO05D009824 2.7e-17 93.6 334 35.6
DCAR_003597 Daucus carota HOM05D007988 ORTHO05D009824 3.5e-17 93.2 338 37.0
Carub.0001s2093 Capsella rubella HOM05D012069 ORTHO05D009824 1.0e-16 91.7 340 35.3
Sp1g19040 Schrenkiella parvula HOM05D012069 ORTHO05D009824 3.0e-16 90.1 326 32.8
A06p17540 Brassica napus HOM05D012069 ORTHO05D009824 9.6e-15 85.1 222 35.1
CARHR021870 Cardamine hirsuta HOM05D012069 ORTHO05D009824 1.3e-14 84.7 331 31.1
BraA06t24850Z Brassica rapa HOM05D012069 ORTHO05D009824 5.3e-13 79.3 342 29.2
Thhalv10009526m.g Eutrema salsugineum HOM05D012069 ORTHO05D009824 6.9e-13 79.0 349 31.8
BcaB07g32147 Brassica carinata HOM05D012069 ORTHO05D009824 3.4e-12 76.6 235 33.2
Lalb_Chr08g0240981 Lupinus albus HOM05D007988 ORTHO05D009824 1.3e-11 74.7 192 40.6
AUR62013453 Chenopodium quinoa HOM05D007988 ORTHO05D009824 2.2e-11 73.9 193 37.8
Aqoxy5G02290 Aquilegia oxysepala HOM05D007988 ORTHO05D009824 8.4e-11 72.0 182 43.4
BcaC05g26060 Brassica carinata HOM05D012069 ORTHO05D009824 8.4e-11 72.0 224 34.4
BolC5t30735H Brassica oleracea HOM05D012069 ORTHO05D009824 8.4e-11 72.0 224 34.4
C05p20410 Brassica napus HOM05D012069 ORTHO05D009824 1.1e-10 71.6 224 34.4
PGSC0003DMG400002385 Solanum tuberosum HOM05D007988 ORTHO05D009824 1.8e-08 64.3 191 34.6
PSO528G0108 Papaver somniferum HOM05D047919 ORTHO05D050194 6.2e-06 55.8 279 34.4


User provided reference genes

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