Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17647 Corylus avellana HOM05D006959 ORTHO05D008808 1.5e-116 422.9 230 100.0
Cfa018414 Carpinus fangiana HOM05D006959 ORTHO05D008808 4.1e-101 371.7 230 87.0
CiPaw.16G022000 Carya illinoinensis HOM05D006959 ORTHO05D008808 3.6e-81 305.4 230 72.2
Manes.18G084200 Manihot esculenta HOM05D006959 ORTHO05D008808 7.7e-68 261.2 230 65.2
FvH4_2g28060 Fragaria vesca HOM05D006959 ORTHO05D008808 1.1e-66 257.3 232 60.8
FAN24G0315 Fragaria x ananassa HOM05D006959 ORTHO05D008808 2.5e-66 256.1 232 60.8
FAN27G3284 Fragaria x ananassa HOM05D006959 ORTHO05D008808 2.5e-66 256.1 232 60.3
Thecc.08G134700 Theobroma cacao HOM05D006959 ORTHO05D008808 3.3e-66 255.8 231 61.0
Potri.002G076700 Populus trichocarpa HOM05D006959 ORTHO05D008808 8.0e-65 251.1 231 64.1
RcHm_v2.0_Chr6g0297021 Rosa chinensis HOM05D006959 ORTHO05D008808 1.8e-64 250.0 229 59.8
TAR381G0659 Trochodendron aralioides HOM05D006959 ORTHO05D008808 3.0e-64 249.2 230 60.9
Gohir.A05G238900 Gossypium hirsutum HOM05D006959 ORTHO05D008808 4.0e-64 248.8 230 60.4
MELO3C008461.2 Cucumis melo HOM05D006959 ORTHO05D008808 6.8e-64 248.1 233 59.7
Duzib093G2176 Durio zibethinus HOM05D006959 ORTHO05D008808 1.2e-63 247.3 236 62.7
QL09p031824 Quercus lobata HOM05D006959 ORTHO05D008808 1.2e-63 247.3 235 62.6
MD15G1131600 Malus domestica HOM05D006959 ORTHO05D008808 3.4e-63 245.7 229 60.7
QL09p031413 Quercus lobata HOM05D006959 ORTHO05D008808 4.4e-63 245.4 235 62.1
Gohir.D05G240800 Gossypium hirsutum HOM05D006959 ORTHO05D008808 7.5e-63 244.6 230 59.6
Gorai.009G249600 Gossypium raimondii HOM05D006959 ORTHO05D008808 7.5e-63 244.6 230 59.6
Ciclev10002542m.g Citrus clementina HOM05D006959 ORTHO05D008808 3.7e-62 242.3 230 61.7
TWI32G1355 Tripterygium wilfordii HOM05D006959 ORTHO05D008808 6.3e-62 241.5 230 58.3
Sed0020251 Sechium edule HOM05D006959 ORTHO05D008808 3.1e-61 239.2 231 60.2
Atru.chr13.1599 Acer truncatum HOM05D006959 ORTHO05D008808 4.1e-61 238.8 232 59.5
CsaV3_6G033990 Cucumis sativus L. HOM05D006959 ORTHO05D008808 1.6e-60 236.9 227 60.8
Nn1g08935 Nelumbo nucifera HOM05D006959 ORTHO05D008808 1.6e-60 236.9 230 60.0
PGR042G0886 Punica granatum HOM05D006959 ORTHO05D008808 1.6e-60 236.9 236 56.8
Hma1.2p1_0159F.1_g070330 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 2.7e-60 236.1 232 59.5
COL.COLO4_32963 Corchorus olitorius HOM05D006959 ORTHO05D008808 3.5e-60 235.7 228 57.5
Oeu026374.1 Olea europaea HOM05D006959 ORTHO05D008808 7.8e-60 234.6 234 58.1
Cpa.g.sc64.158 Carica papaya HOM05D006959 ORTHO05D008808 1.7e-59 233.4 229 59.4
Lj4A666T17 Lonicera japonica HOM05D006959 ORTHO05D008808 5.6e-58 228.4 228 58.8
Glyma.13G035500 Glycine max HOM05D006959 ORTHO05D008808 1.2e-57 227.3 230 56.5
FAN20G3215 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.6e-57 226.9 232 56.0
arahy.Tifrunner.gnm1.ann1.P1MCWD Arachis hypogaea HOM05D006959 ORTHO05D008808 2.1e-57 226.5 230 58.3
Cc10_g14010 Coffea canephora HOM05D006959 ORTHO05D008808 6.1e-57 224.9 228 58.8
Phvul.001G066600 Phaseolus vulgaris HOM05D006959 ORTHO05D008808 6.1e-57 224.9 230 54.8
VMungo0647G0259 Vigna mungo HOM05D006959 ORTHO05D008808 6.1e-57 224.9 230 54.3
Lj4A663T33 Lonicera japonica HOM05D006959 ORTHO05D008808 8.0e-57 224.6 224 58.9
Sabra02G0060200 Salix brachista HOM05D006959 ORTHO05D008808 8.0e-57 224.6 288 51.7
Hund17359 Selenicereus undatus HOM05D006959 ORTHO05D008808 3.1e-56 222.6 228 57.9
ClCG08G006070 Citrullus lanatus HOM05D006959 ORTHO05D008808 6.8e-56 221.5 265 50.2
Migut.C01073 Erythranthe guttata HOM05D006959 ORTHO05D008808 8.9e-56 221.1 226 56.2
Eucgr.F03861 Eucalyptus grandis HOM05D006959 ORTHO05D008808 2.0e-55 219.9 233 54.5
THA.LOC104813687 Tarenaya hassleriana HOM05D006959 ORTHO05D008808 2.0e-55 219.9 237 53.6
GSVIVG01008793001 Vitis vinifera HOM05D006959 ORTHO05D008808 3.4e-55 219.2 176 67.0
Aqoxy6G00289 Aquilegia oxysepala HOM05D006959 ORTHO05D008808 4.4e-55 218.8 154 72.7
MSTRG.1406 Avicennia marina HOM05D006959 ORTHO05D008808 9.8e-55 217.6 227 55.9
HanXRQChr02g0045531 Helianthus annuus HOM05D006959 ORTHO05D008808 9.8e-55 217.6 227 56.8
Lsat_1_v5_gn_1_10340 Lactuca sativa HOM05D006959 ORTHO05D008808 9.8e-55 217.6 225 55.1
Peaxi162Scf00066g00072 Petunia axillaris HOM05D006959 ORTHO05D008808 2.9e-54 216.1 232 56.0
MBI03_g13506_MAGBIO Magnolia biondii HOM05D006959 ORTHO05D008808 3.7e-54 215.7 240 53.8
PSO528G0249 Papaver somniferum HOM05D006959 ORTHO05D008808 4.9e-54 215.3 247 50.6
Nitab4.5_0002625g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 1.1e-53 214.2 230 53.9
PGSC0003DMG402018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 1.1e-53 214.2 231 52.8
Sopen04g026100 Solanum pennellii HOM05D006959 ORTHO05D008808 1.4e-53 213.8 231 53.7
AUR62007695 Chenopodium quinoa HOM05D006959 ORTHO05D008808 2.4e-53 213.0 241 53.5
AUR62013448 Chenopodium quinoa HOM05D006959 ORTHO05D008808 3.2e-53 212.6 242 52.9
PGSC0003DMG403018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 1.2e-52 210.7 231 53.2
PSO170G0856 Papaver somniferum HOM05D006959 ORTHO05D008808 1.6e-52 210.3 247 50.2
Thhalv10019109m.g Eutrema salsugineum HOM05D006959 ORTHO05D008808 2.7e-52 209.5 234 52.6
Sp5g32400 Schrenkiella parvula HOM05D006959 ORTHO05D008808 2.7e-52 209.5 232 53.0
Lj1g0023549 Lotus japonicus HOM05D006959 ORTHO05D008808 3.5e-52 209.1 230 53.0
Actinidia24726 Actinidia chinensis HOM05D006959 ORTHO05D008808 4.6e-52 208.8 196 59.7
CAN.G46.11 Capsicum annuum HOM05D006959 ORTHO05D008808 6.6e-51 204.9 230 52.2
CANSAT64G0796 Cannabis sativa HOM05D006959 ORTHO05D008808 1.1e-50 204.1 232 53.9
Nitab4.5_0008327g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 1.1e-50 204.1 254 48.8
Actinidia15201 Actinidia chinensis HOM05D006959 ORTHO05D008808 1.9e-50 203.4 230 52.6
AL2G37400 Arabidopsis lyrata HOM05D006959 ORTHO05D008808 1.9e-50 203.4 233 51.1
Carub.0002s2410 Capsella rubella HOM05D006959 ORTHO05D008808 9.5e-50 201.1 233 50.6
AT1G77230 Arabidopsis thaliana HOM05D006959 ORTHO05D008808 1.2e-49 200.7 233 51.5
SalBow7G4180 Salvia bowleyana HOM05D006959 ORTHO05D008808 3.6e-49 199.1 236 51.7
EL10Ac1g01371 Beta vulgaris HOM05D006959 ORTHO05D008808 6.2e-49 198.4 269 47.2
CDE06G1932 Ceratophyllum demersum HOM05D006959 ORTHO05D008808 1.4e-48 197.2 214 53.3
CARHR070700 Cardamine hirsuta HOM05D006959 ORTHO05D008808 1.8e-48 196.8 227 49.8
Os02g0553500 Oryza sativa ssp. japonica HOM05D006959 ORTHO05D008808 2.0e-47 193.4 227 49.3
BcaC08g45484 Brassica carinata HOM05D006959 ORTHO05D008808 4.4e-47 192.2 224 49.1
HPP92_016131 Vanilla planifolia HOM05D006959 ORTHO05D008808 4.4e-47 192.2 226 48.2
A08p07140 Brassica napus HOM05D006959 ORTHO05D008808 5.8e-47 191.8 224 50.0
BraA08t32726Z Brassica rapa HOM05D006959 ORTHO05D008808 5.8e-47 191.8 224 50.0
Lalb_Chr04g0253591 Lupinus albus HOM05D006959 ORTHO05D008808 7.5e-47 191.4 230 50.9
Zm00001eb181980 Zea mays HOM05D006959 ORTHO05D008808 7.5e-47 191.4 227 49.8
C06p31380 Brassica napus HOM05D006959 ORTHO05D008808 4.9e-46 188.7 224 49.6
BolC6t38274H Brassica oleracea HOM05D006959 ORTHO05D008808 1.1e-45 187.6 224 49.6
Hma1.2p1_0159F.1_g070340 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 1.9e-45 186.8 215 53.5
arahy.Tifrunner.gnm1.ann1.84IAJ5 Arachis hypogaea HOM05D006959 ORTHO05D008808 1.2e-44 184.1 323 40.9
Aa31LG4G7230 Aethionema arabicum HOM05D006959 ORTHO05D008808 2.7e-44 183.0 240 48.3
CSS0019542 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 1.0e-43 181.0 230 49.1
Medtr1g029720 Medicago truncatula HOM05D006959 ORTHO05D008808 5.1e-43 178.7 230 47.8
Glyma.14G156700 Glycine max HOM05D006959 ORTHO05D008808 1.1e-42 177.6 223 48.9
BcaB02g07099 Brassica carinata HOM05D006959 ORTHO05D008808 3.1e-40 169.5 227 44.1
Ca_12642_v3 Cicer arietinum L. HOM05D006959 ORTHO05D008808 8.3e-38 161.4 247 43.3
ATR0584G163 Amborella trichopoda HOM05D006959 ORTHO05D008808 7.8e-36 154.8 158 51.9
Solyc04g058200.3 Solanum lycopersicum HOM05D006959 ORTHO05D008808 1.0e-35 154.5 128 61.7
Dinv27258 Davidia involucrata HOM05D006959 ORTHO05D008808 1.1e-32 144.4 124 62.1
Prupe.1G487500 Prunus persica HOM05D006959 ORTHO05D008808 8.9e-32 141.4 231 42.9
Psat6g040840 Pisum sativum HOM05D006959 ORTHO05D008808 9.9e-31 137.9 168 50.0
Haze_17648 Corylus avellana HOM05D006959 ORTHO05D008808 1.9e-29 133.7 85 87.1
DCAR_028201 Daucus carota HOM05D006959 ORTHO05D008808 1.9e-29 133.7 227 41.9
TPR.G879 Trifolium pratense HOM05D006959 ORTHO05D008808 6.6e-27 125.2 84 72.6
SGA_v2.0_scaffold52G18911 Striga asiatica HOM05D006959 ORTHO05D008808 7.3e-26 121.7 144 50.7
RcHm_v2.0_Chr6g0296961 Rosa chinensis HOM05D006959 ORTHO05D008808 3.8e-22 109.4 69 75.4
CSS0009415 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 8.4e-22 108.2 156 46.2
CSS0036249 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 7.8e-20 101.7 156 43.6
Mapoly0050s0106 Marchantia polymorpha HOM05D006959 ORTHO05D008808 3.0e-19 99.8 165 36.4
SEGI_05118 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 7.3e-18 95.1 83 51.8
Sc26g0002850 Simmondsia chinensis HOM05D006959 ORTHO05D008808 2.1e-17 93.6 230 33.5
SEGI_04582 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 3.1e-16 89.7 95 47.4
RcHm_v2.0_Chr6g0296981 Rosa chinensis HOM05D006959 ORTHO05D008808 1.1e-13 81.3 70 64.3
Cre12.g510034 Chlamydomonas reinhardtii HOM05D006959 ORTHO05D008808 4.2e-13 79.3 115 41.7
FAN24G1784 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.2e-12 77.8 47 74.5
FAN27G2285 Fragaria x ananassa HOM05D006959 ORTHO05D008808 5.1e-11 72.4 105 41.0
CBR_g52628 Chara braunii HOM05D006959 ORTHO05D008808 1.0e-06 58.2 65 46.2
Medtr7g059150 Medicago truncatula HOM05D003946 ORTHO05D004485 8.4e-06 55.1 144 28.5


User provided reference genes

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