Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 2017.7 1009 100.0
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1622.4 829 97.7
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1537.3 829 91.9
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1519.6 828 90.9
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1512.7 828 90.9
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1445.6 830 87.2
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1444.1 827 87.1
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1443.7 824 87.6
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1443.7 829 87.0
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1438.3 826 86.8
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1425.6 820 86.3
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1424.8 819 87.1
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1420.2 827 85.9
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1419.4 824 86.2
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1417.9 826 86.3
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1417.5 827 86.2
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1415.6 831 86.0
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1415.2 831 86.0
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1415.2 829 85.5
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1414.8 815 86.4
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1412.5 823 86.1
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1411.4 827 85.4
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1409.8 828 85.4
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1409.4 822 85.5
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1409.4 822 85.5
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1406.7 819 86.0
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1406.0 831 85.6
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1403.7 826 85.0
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1401.3 819 85.8
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1401.0 824 85.3
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1400.2 830 84.9
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1399.4 878 82.1
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1398.6 831 85.1
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1395.9 826 84.7
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1392.1 827 85.1
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1392.1 821 85.5
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1388.2 824 85.0
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1388.2 877 81.1
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1387.1 829 83.1
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1384.8 805 85.8
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1381.3 825 84.0
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1381.3 829 83.0
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1380.9 827 84.6
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1379.0 815 85.3
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1375.1 829 83.7
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1375.1 825 83.9
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1375.1 813 84.5
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1375.1 804 85.0
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1371.3 828 83.8
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1370.5 830 83.1
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1369.8 813 84.7
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1369.0 859 81.3
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1368.2 778 87.1
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1368.2 804 86.1
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1365.1 829 82.5
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1364.4 807 84.5
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1364.4 820 84.0
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1358.6 800 85.5
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1356.3 859 77.1
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1355.1 793 85.0
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1355.1 799 84.7
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1352.8 825 82.4
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1352.4 819 83.6
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1350.5 801 83.9
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1348.6 824 81.8
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1347.4 809 83.2
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1346.6 792 85.2
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1343.9 796 84.2
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1340.9 796 84.2
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1338.2 792 84.5
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1334.7 847 79.7
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1333.5 824 82.6
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1332.4 815 82.2
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1329.7 799 83.6
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1328.9 818 82.2
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1327.8 817 81.5
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1322.0 812 81.4
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1320.1 790 83.0
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1318.9 809 82.0
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1318.5 804 81.7
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1316.2 801 82.9
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1314.7 812 81.7
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1312.7 799 82.2
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1310.4 814 81.4
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1307.4 814 81.2
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1307.4 814 81.2
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1306.6 817 82.5
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1305.8 858 78.7
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1305.8 821 80.4
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1305.4 792 82.1
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1305.0 779 83.3
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1304.7 800 82.0
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1303.5 799 81.7
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1302.0 858 76.8
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1299.6 790 82.4
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1298.9 825 79.8
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1298.9 836 78.9
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1295.8 779 82.5
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1295.4 790 82.2
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1295.4 790 82.2
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1295.0 787 82.1
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1294.6 816 80.1
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1294.6 816 80.1
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1294.6 816 80.1
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1294.6 816 80.1
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1294.3 789 81.9
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1293.1 794 82.7
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1293.1 800 81.6
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1293.1 780 82.3
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1291.9 793 81.2
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1291.2 794 82.6
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1283.1 810 79.1
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1283.1 842 76.6
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1281.9 743 87.1
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1280.0 826 78.7
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1276.9 815 79.9
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1272.3 851 76.1
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1268.1 797 80.7
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1265.4 743 85.3
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1262.7 801 79.2
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1261.5 793 81.7
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1259.6 781 81.3
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1258.0 823 79.3
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1253.8 809 73.8
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1252.7 801 78.9
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1247.6 801 79.3
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1243.0 717 86.1
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1239.6 784 80.4
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1234.2 836 76.8
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1227.2 818 78.9
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1223.8 741 82.7
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1222.2 801 77.8
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1212.6 799 76.7
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1208.7 842 73.8
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1206.4 799 77.5
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1191.4 773 76.2
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1172.5 800 74.1
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1167.1 743 78.1
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1139.0 800 72.8
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1137.5 795 73.0
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1131.7 736 80.3
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 1.3e-308 1063.1 787 71.3
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 1.5e-288 996.5 576 83.2
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 9.6e-280 967.2 623 73.0
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.3e-276 956.8 800 66.1
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 1.1e-272 943.7 552 86.4
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 4.9e-268 928.3 503 88.5
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 3.8e-260 902.1 523 82.0
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 3.1e-193 679.9 702 56.0
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 7.9e-149 532.3 449 61.0
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 9.3e-142 508.8 346 80.6
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 6.1e-141 506.1 292 84.2
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 7.7e-112 409.5 313 72.5
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.1e-102 379.0 397 54.9
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 1.8e-100 371.7 250 73.6
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.0e-92 344.0 582 45.7
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 1.1e-65 256.1 153 81.0
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 4.4e-59 234.2 156 76.3
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 8.1e-45 186.8 163 57.7
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 5.3e-36 157.5 477 29.6
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.3e-31 142.9 461 28.4
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 3.9e-31 141.4 76 88.2
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 4.3e-30 137.9 458 27.1
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.1e-28 133.3 93 68.8
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 4.1e-28 131.3 68 94.1
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.2e-27 129.8 472 28.2
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 6.5e-26 124.0 432 27.8
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.9e-25 122.5 96 66.7
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 7.9e-24 117.1 74 75.7
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 4.7e-16 91.3 140 42.9
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-15 89.0 217 29.5
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 5.1e-15 87.8 220 32.3
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 1.1e-12 80.1 83 49.4
CBR_g38920 Chara braunii HOM05D003945 ORTHO05D004625 4.2e-09 68.2 138 32.6
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 9.4e-09 67.0 102 39.2
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 3.0e-07 62.0 38 78.9


User provided reference genes

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