Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17611 Corylus avellana HOM05D008003 ORTHO05D010079 2.9e-97 358.6 185 100.0
Cfa018459 Carpinus fangiana HOM05D008003 ORTHO05D010079 1.3e-94 349.7 185 97.8
CiPaw.16G052800 Carya illinoinensis HOM05D008003 ORTHO05D010079 1.1e-75 287.0 187 80.2
QL02p007150 Quercus lobata HOM05D008003 ORTHO05D010079 9.0e-75 283.9 187 80.7
Duzib116G0363 Durio zibethinus HOM05D008003 ORTHO05D010079 4.8e-68 261.5 183 73.8
COL.COLO4_26389 Corchorus olitorius HOM05D000499 ORTHO05D007471 6.2e-68 261.2 173 76.9
Thecc.08G020300 Theobroma cacao HOM05D008003 ORTHO05D010079 1.2e-66 256.9 186 72.6
Gohir.D05G200500 Gossypium hirsutum HOM05D008003 ORTHO05D010079 1.7e-65 253.1 185 69.2
Gorai.009G205800 Gossypium raimondii HOM05D008003 ORTHO05D010079 1.7e-65 253.1 185 69.2
Duzib116G0025 Durio zibethinus HOM05D008003 ORTHO05D010079 1.1e-64 250.4 179 72.1
GSVIVG01009625001 Vitis vinifera HOM05D000499 ORTHO05D007471 1.4e-64 250.0 177 71.8
RcHm_v2.0_Chr6g0294451 Rosa chinensis HOM05D008003 ORTHO05D010079 4.2e-64 248.4 186 71.0
Potri.002G131500 Populus trichocarpa HOM05D008003 ORTHO05D010079 1.6e-63 246.5 192 70.8
FvH4_2g26081 Fragaria vesca HOM05D008003 ORTHO05D010079 2.1e-63 246.1 186 69.9
Nn5g29446 Nelumbo nucifera HOM05D008003 ORTHO05D010079 1.3e-62 243.4 183 67.2
Manes.05G165700 Manihot esculenta HOM05D008003 ORTHO05D010079 5.1e-62 241.5 187 70.1
Hma1.2p1_0260F.1_g104350 Hydrangea macrophylla HOM05D008003 ORTHO05D010079 6.7e-62 241.1 185 64.9
CANSAT56G3107 Cannabis sativa HOM05D008003 ORTHO05D010079 8.7e-62 240.7 195 67.2
Atru.chr13.573 Acer truncatum HOM05D008003 ORTHO05D010079 3.3e-61 238.8 192 69.3
PGR031G0927 Punica granatum HOM05D008003 ORTHO05D010079 3.3e-61 238.8 188 68.6
MBI16_g13167_MAGBIO Magnolia biondii HOM05D008003 ORTHO05D010079 9.6e-61 237.3 189 65.6
Aqoxy5G01740 Aquilegia oxysepala HOM05D008003 ORTHO05D010079 1.3e-60 236.9 185 64.9
Cc10_g03530 Coffea canephora HOM05D000499 ORTHO05D007471 4.8e-60 235.0 186 67.7
MD11G1306400 Malus domestica HOM05D008003 ORTHO05D010079 1.0e-57 227.3 202 64.9
Sabra02G0103400 Salix brachista HOM05D008003 ORTHO05D010079 3.8e-57 225.3 182 68.7
Cpa.g.sc64.35 Carica papaya HOM05D008003 ORTHO05D010079 1.9e-56 223.0 173 66.5
PSO170G4120 Papaver somniferum HOM05D008003 ORTHO05D010079 1.9e-56 223.0 192 61.5
Lalb_Chr14g0370901 Lupinus albus HOM05D008003 ORTHO05D010079 3.2e-56 222.2 183 61.2
Sed0001684 Sechium edule HOM05D008003 ORTHO05D010079 4.2e-56 221.9 180 61.7
Nitab4.5_0003884g0080 Nicotiana tabacum HOM05D008003 ORTHO05D010079 1.0e-54 217.2 185 62.2
Ca_17236_v3 Cicer arietinum L. HOM05D008003 ORTHO05D010079 2.3e-54 216.1 180 62.8
Oeu004673.1 Olea europaea HOM05D008003 ORTHO05D010079 1.5e-53 213.4 186 62.4
PSO700G0197 Papaver somniferum HOM05D008003 ORTHO05D010079 1.5e-53 213.4 192 58.9
Ciclev10002654m.g Citrus clementina HOM05D008003 ORTHO05D010079 1.9e-53 213.0 187 64.2
TPR.G12880 Trifolium pratense HOM05D008003 ORTHO05D010079 2.5e-53 212.6 180 62.2
TWI36G0609 Tripterygium wilfordii HOM05D008003 ORTHO05D010079 2.5e-53 212.6 192 63.0
Migut.N02677 Erythranthe guttata HOM05D000499 ORTHO05D007471 3.3e-53 212.2 189 60.3
CSS0033209 Camellia sinensis var. sinensis HOM05D008003 ORTHO05D010079 4.3e-53 211.8 190 63.2
SGA_v2.0_scaffold33G13535 Striga asiatica HOM05D008003 ORTHO05D010079 4.3e-53 211.8 185 62.2
HanXRQChr02g0045861 Helianthus annuus HOM05D008003 ORTHO05D010079 7.4e-53 211.1 183 60.7
Medtr8g106450 Medicago truncatula HOM05D008003 ORTHO05D010079 9.6e-53 210.7 180 61.7
CAN.G74.23 Capsicum annuum HOM05D008003 ORTHO05D010079 3.7e-52 208.8 188 60.1
Peaxi162Scf00337g00617 Petunia axillaris HOM05D008003 ORTHO05D010079 3.7e-52 208.8 176 62.5
MD03G1292000 Malus domestica HOM05D008003 ORTHO05D010079 6.3e-52 208.0 202 59.4
Prupe.8G265000 Prunus persica HOM05D008003 ORTHO05D010079 6.3e-52 208.0 194 62.9
AUR62033864 Chenopodium quinoa HOM05D008003 ORTHO05D010079 1.1e-51 207.2 183 59.6
DCAR_020952 Daucus carota HOM05D000499 ORTHO05D007471 1.4e-51 206.8 177 62.1
Gohir.A05G197500 Gossypium hirsutum HOM05D008003 ORTHO05D010079 3.1e-51 205.7 140 70.7
MELO3C012606.2 Cucumis melo HOM05D008003 ORTHO05D010079 4.1e-51 205.3 180 56.7
Lj2g0009988 Lotus japonicus HOM05D008003 ORTHO05D010079 5.3e-51 204.9 182 61.5
SalBow1G6207 Salvia bowleyana HOM05D008003 ORTHO05D010079 6.9e-51 204.5 177 63.3
SalBow1G7493 Salvia bowleyana HOM05D008003 ORTHO05D010079 7.6e-50 201.1 177 62.1
EL10As22g24222 Beta vulgaris HOM05D008003 ORTHO05D010079 3.8e-49 198.7 183 57.9
Lsat_1_v5_gn_1_19420 Lactuca sativa HOM05D008003 ORTHO05D010079 4.2e-48 195.3 180 56.1
CsaV3_7G022920 Cucumis sativus L. HOM05D007284 ORTHO05D009303 5.5e-48 194.9 157 58.6
Solyc04g008080.1 Solanum lycopersicum HOM05D008003 ORTHO05D010079 7.2e-48 194.5 185 58.4
AUR62040074 Chenopodium quinoa HOM05D008003 ORTHO05D010079 2.7e-47 192.6 168 59.5
Medtr8g106405 Medicago truncatula HOM05D008003 ORTHO05D010079 3.6e-47 192.2 149 63.8
Glyma.05G242100 Glycine max HOM05D008003 ORTHO05D010079 6.7e-46 188.0 183 56.3
Nitab4.5_0012105g0050 Nicotiana tabacum HOM05D008003 ORTHO05D010079 4.3e-45 185.3 155 63.2
ECA247G3275 Erigeron canadensis HOM05D000264 ORTHO05D000152 5.3e-43 178.3 163 57.7
AL8G18550 Arabidopsis lyrata HOM05D008003 ORTHO05D010079 1.3e-41 173.7 196 51.0
Phvul.002G325400 Phaseolus vulgaris HOM05D008003 ORTHO05D010079 2.2e-41 172.9 183 51.9
Carub.0008s0637 Capsella rubella HOM05D008003 ORTHO05D010079 8.5e-41 171.0 195 49.7
Phvul.002G325500 Phaseolus vulgaris HOM05D008003 ORTHO05D010079 1.4e-40 170.2 182 51.1
AT5G42655 Arabidopsis thaliana HOM05D008003 ORTHO05D010079 5.5e-40 168.3 196 49.0
VMungo0251G2996 Vigna mungo HOM05D008003 ORTHO05D010079 2.7e-39 166.0 179 52.5
THA.LOC104803393 Tarenaya hassleriana HOM05D008003 ORTHO05D010079 1.8e-38 163.3 174 52.3
CARHR181570 Cardamine hirsuta HOM05D000499 ORTHO05D007471 2.3e-38 162.9 193 47.7
arahy.Tifrunner.gnm1.ann1.M7IFVU Arachis hypogaea HOM05D008003 ORTHO05D010079 5.1e-38 161.8 199 51.3
Sp2g07120 Schrenkiella parvula HOM05D008003 ORTHO05D010079 2.0e-37 159.8 196 47.4
A02p27430 Brassica napus HOM05D008003 ORTHO05D010079 3.3e-37 159.1 195 47.2
BolC2t10386H Brassica oleracea HOM05D008003 ORTHO05D010079 3.3e-37 159.1 195 47.2
BraA02t07771Z Brassica rapa HOM05D008003 ORTHO05D010079 3.3e-37 159.1 195 47.2
BcaC03g16515 Brassica carinata HOM05D008003 ORTHO05D010079 1.3e-36 157.1 192 47.4
C02p43340 Brassica napus HOM05D008003 ORTHO05D010079 1.3e-36 157.1 192 47.4
Thhalv10019186m.g Eutrema salsugineum HOM05D008003 ORTHO05D010079 2.8e-36 156.0 193 47.2
PGSC0003DMG400029513 Solanum tuberosum HOM05D005814 ORTHO05D006821 4.8e-36 155.2 126 62.7
BcaB07g30606 Brassica carinata HOM05D008003 ORTHO05D010079 6.9e-35 151.4 189 45.0
ATR0733G062 Amborella trichopoda HOM05D008003 ORTHO05D010079 2.2e-33 146.4 179 45.8
Ah.05g169480 Amaranthus hybridus HOM05D008003 ORTHO05D010079 5.3e-27 125.2 181 44.2
SEGI_14506 Sequoiadendron giganteum HOM05D008003 ORTHO05D010079 5.3e-27 125.2 188 39.9
Thhalv10003357m.g Eutrema salsugineum HOM05D008003 ORTHO05D010079 2.6e-26 122.9 114 54.4
Zm00001eb056600 Zea mays HOM05D008003 ORTHO05D010079 1.7e-20 103.6 199 38.2
AUR62036507 Chenopodium quinoa HOM05D000013 ORTHO05D000011 3.5e-10 69.3 87 43.7
Cfa010556 Carpinus fangiana HOM05D058412 ORTHO05D010079 4.5e-10 68.9 69 56.5
FvH4_6g42490 Fragaria vesca HOM05D000180 ORTHO05D000099 8.6e-09 64.7 149 30.9
FAN14G0740 Fragaria x ananassa HOM05D000180 ORTHO05D000099 9.5e-08 61.2 142 29.6
TAR381G1448 Trochodendron aralioides HOM05D000180 ORTHO05D000099 1.6e-07 60.5 105 32.4
CSS0046463 Camellia sinensis var. sinensis HOM05D000180 ORTHO05D000099 3.6e-07 59.3 86 34.9
CiPaw.05G078800 Carya illinoinensis HOM05D000180 ORTHO05D000099 3.6e-07 59.3 85 36.5
QL04p012493 Quercus lobata HOM05D000180 ORTHO05D000099 3.6e-07 59.3 101 32.7
QL04p013659 Quercus lobata HOM05D000180 ORTHO05D000099 3.6e-07 59.3 101 32.7
SMO111G0080 Selaginella moellendorffii HOM05D001508 ORTHO05D001381 3.6e-07 59.3 143 28.7
FAN02G4293 Fragaria x ananassa HOM05D000180 ORTHO05D000099 4.7e-07 58.9 155 27.7
HanXRQChr11g0340971 Helianthus annuus HOM05D000180 ORTHO05D000099 4.7e-07 58.9 118 30.5
ATR0810G102 Amborella trichopoda HOM05D000180 ORTHO05D000099 6.1e-07 58.5 99 35.4
ATR0810G295 Amborella trichopoda HOM05D000180 ORTHO05D000099 6.1e-07 58.5 155 29.0
CDE08G0139 Ceratophyllum demersum HOM05D000180 ORTHO05D000099 6.1e-07 58.5 119 34.5
Potri.008G061400 Populus trichocarpa HOM05D000180 ORTHO05D000099 6.1e-07 58.5 84 40.5
THA.LOC104819119 Tarenaya hassleriana HOM05D000180 ORTHO05D000099 6.1e-07 58.5 122 36.9
ATR0810G039 Amborella trichopoda HOM05D000180 ORTHO05D000099 8.0e-07 58.2 85 37.6
CDE06G2414 Ceratophyllum demersum HOM05D000180 ORTHO05D000099 8.0e-07 58.2 100 37.0
SEGI_27732 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 8.0e-07 58.2 85 35.3
SalBow1G2735 Salvia bowleyana HOM05D001508 ORTHO05D001381 1.0e-06 57.8 105 32.4
SalBow1G6296 Salvia bowleyana HOM05D001508 ORTHO05D001381 1.0e-06 57.8 105 32.4
TAR628G0454 Trochodendron aralioides HOM05D000180 ORTHO05D000099 1.0e-06 57.8 150 31.3
TAR633G2755 Trochodendron aralioides HOM05D000180 ORTHO05D000099 1.0e-06 57.8 127 29.1
CSS0008829 Camellia sinensis var. sinensis HOM05D000180 ORTHO05D000099 1.4e-06 57.4 167 28.7
CDE03G0121 Ceratophyllum demersum HOM05D000180 ORTHO05D000099 1.4e-06 57.4 111 36.0
FAN09G1602 Fragaria x ananassa HOM05D000180 ORTHO05D000099 1.4e-06 57.4 81 35.8
Lj9C645T25 Lonicera japonica HOM05D000180 ORTHO05D000099 1.4e-06 57.4 109 31.2
Peaxi162Scf00769g00038 Petunia axillaris HOM05D000180 ORTHO05D000099 1.8e-06 57.0 87 35.6
SEGI_32439 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 1.8e-06 57.0 104 29.8
vmacro13727 Vaccinium macrocarpon HOM05D000180 ORTHO05D000099 1.8e-06 57.0 113 35.4
Ah.13g075610 Amaranthus hybridus HOM05D000180 ORTHO05D000099 2.3e-06 56.6 97 40.2
FvH4_6g42930 Fragaria vesca HOM05D000180 ORTHO05D000099 2.3e-06 56.6 86 34.9
FAN05G0464 Fragaria x ananassa HOM05D000180 ORTHO05D000099 2.3e-06 56.6 148 30.4
FAN13G0477 Fragaria x ananassa HOM05D001508 ORTHO05D001381 2.3e-06 56.6 111 31.5
FAN14G4538 Fragaria x ananassa HOM05D000180 ORTHO05D000099 2.3e-06 56.6 86 34.9
Lj3g0001821 Lotus japonicus HOM05D000180 ORTHO05D000099 2.3e-06 56.6 132 29.5
Mapoly0070s0018 Marchantia polymorpha HOM05D001508 ORTHO05D000099 2.3e-06 56.6 86 36.0
Oeu008838.1 Olea europaea HOM05D001508 ORTHO05D001381 2.3e-06 56.6 105 33.3
ATR0810G065 Amborella trichopoda HOM05D000180 ORTHO05D000099 3.0e-06 56.2 156 30.8
MSTRG.18525 Avicennia marina HOM05D000180 ORTHO05D000099 3.0e-06 56.2 85 40.0
CDE06G0402 Ceratophyllum demersum HOM05D000180 ORTHO05D000099 3.0e-06 56.2 100 37.0
CDE06G2788 Ceratophyllum demersum HOM05D000180 ORTHO05D000099 3.0e-06 56.2 100 37.0
Cc02_g35990 Coffea canephora HOM05D000180 ORTHO05D000099 3.0e-06 56.2 94 37.2
Phvul.011G098700 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 3.0e-06 56.2 98 33.7
Prupe.3G215500 Prunus persica HOM05D000180 ORTHO05D000099 3.0e-06 56.2 155 31.0
Rhsim07G0062500 Rhododendron simsii HOM05D000180 ORTHO05D000099 3.0e-06 56.2 128 30.5
RcHm_v2.0_Chr7g0195991 Rosa chinensis HOM05D001508 ORTHO05D001381 3.0e-06 56.2 105 32.4
EL10Ac3g06867 Beta vulgaris HOM05D000180 ORTHO05D000099 4.0e-06 55.8 78 38.5
FAN13G3277 Fragaria x ananassa HOM05D001508 ORTHO05D001381 4.0e-06 55.8 105 32.4
Mapoly0099s0036 Marchantia polymorpha HOM05D000180 ORTHO05D010079 4.0e-06 55.8 86 33.7
Phvul.005G032400 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 4.0e-06 55.8 105 30.5
RcHm_v2.0_Chr2g0158861 Rosa chinensis HOM05D000180 ORTHO05D000099 4.0e-06 55.8 154 29.9
TWI75G1431 Tripterygium wilfordii HOM05D000180 ORTHO05D000099 4.0e-06 55.8 111 27.9
TAR381G0411 Trochodendron aralioides HOM05D000180 ORTHO05D000099 4.0e-06 55.8 107 31.8
Zm00001eb091370 Zea mays HOM05D000180 ORTHO05D000099 4.0e-06 55.8 139 31.7
Eucgr.A02487 Eucalyptus grandis HOM05D000180 ORTHO05D000099 5.2e-06 55.5 100 35.0
Eucgr.J02090 Eucalyptus grandis HOM05D000970 ORTHO05D000788 5.2e-06 55.5 82 40.2
Nitab4.5_0000321g0020 Nicotiana tabacum HOM05D000180 ORTHO05D000099 5.2e-06 55.5 87 32.2
Oeu023939.1 Olea europaea HOM05D000180 ORTHO05D000099 5.2e-06 55.5 142 28.9
PGR004G0343 Punica granatum HOM05D000180 ORTHO05D000099 5.2e-06 55.5 158 29.1
QL04p012506 Quercus lobata HOM05D000180 ORTHO05D000099 5.2e-06 55.5 107 30.8
QL04p013648 Quercus lobata HOM05D000180 ORTHO05D000099 5.2e-06 55.5 107 30.8
QL07p024903 Quercus lobata HOM05D000180 ORTHO05D000099 5.2e-06 55.5 98 33.7
SEGI_34719 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 5.2e-06 55.5 98 37.8
TWI15G0614 Tripterygium wilfordii HOM05D001508 ORTHO05D001381 5.2e-06 55.5 108 30.6
arahy.Tifrunner.gnm1.ann1.G07C2M Arachis hypogaea HOM05D000180 ORTHO05D000099 6.8e-06 55.1 114 31.6
arahy.Tifrunner.gnm1.ann1.U3CTV6 Arachis hypogaea HOM05D000180 ORTHO05D000099 6.8e-06 55.1 114 31.6
Manes.04G164400 Manihot esculenta HOM05D000180 ORTHO05D000099 6.8e-06 55.1 98 32.7
Psat7g199920 Pisum sativum HOM05D000180 ORTHO05D000099 6.8e-06 55.1 109 29.4
ATR0810G169 Amborella trichopoda HOM05D000180 ORTHO05D000099 8.8e-06 54.7 84 38.1
AUR62012016 Chenopodium quinoa HOM05D000180 ORTHO05D000099 8.8e-06 54.7 111 31.5
Cc04_g12490 Coffea canephora HOM05D000180 ORTHO05D000099 8.8e-06 54.7 86 32.6
Haze_22988 Corylus avellana HOM05D000180 ORTHO05D000099 8.8e-06 54.7 110 32.7
FvH4_7g23270 Fragaria vesca HOM05D000180 ORTHO05D000099 8.8e-06 54.7 98 31.6
Glyma.11G150400 Glycine max HOM05D000180 ORTHO05D000099 8.8e-06 54.7 107 34.6
Lalb_Chr07g0190981 Lupinus albus HOM05D000180 ORTHO05D000099 8.8e-06 54.7 119 31.9
Lalb_Chr18g0048071 Lupinus albus HOM05D000180 ORTHO05D000099 8.8e-06 54.7 128 29.7
PGSC0003DMG400015556 Solanum tuberosum HOM05D000970 ORTHO05D000788 8.8e-06 54.7 109 29.4
VMungo1127G1270 Vigna mungo HOM05D000180 ORTHO05D000099 8.8e-06 54.7 101 31.7


User provided reference genes

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