Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17559 Corylus avellana HOM05D004348 ORTHO05D006191 0.0e+00 2242.2 1144 100.0
Cfa018516 Carpinus fangiana HOM05D004348 ORTHO05D006191 0.0e+00 1305.8 1219 64.0
QL02p005708 Quercus lobata HOM05D004348 ORTHO05D006191 5.3e-285 984.9 1253 50.9
CiPaw.16G046500 Carya illinoinensis HOM05D004348 ORTHO05D006191 3.7e-278 962.2 1219 51.6
RcHm_v2.0_Chr6g0307221 Rosa chinensis HOM05D004348 ORTHO05D006191 1.1e-271 940.6 1255 48.3
Prupe.1G440200 Prunus persica HOM05D004348 ORTHO05D006191 3.1e-269 932.6 1261 48.1
Atru.chr13.637 Acer truncatum HOM05D004348 ORTHO05D006191 1.1e-258 897.5 1230 47.4
Atru.chr1.1668 Acer truncatum HOM05D004348 ORTHO05D006191 5.7e-255 885.2 1237 47.1
MD15G1086600 Malus domestica HOM05D004348 ORTHO05D006191 1.8e-253 880.2 1270 46.0
COL.COLO4_26463 Corchorus olitorius HOM05D004348 ORTHO05D006191 2.4e-253 879.8 1222 47.5
TAR625G1112 Trochodendron aralioides HOM05D004348 ORTHO05D006191 2.4e-253 879.8 1247 45.8
FAN15G1136 Fragaria x ananassa HOM05D004348 ORTHO05D006191 5.3e-253 878.6 1226 47.1
ClCG05G019730 Citrullus lanatus HOM05D004348 ORTHO05D006191 9.1e-253 877.9 1202 47.4
FvH4_2g34840 Fragaria vesca HOM05D004348 ORTHO05D006191 8.5e-251 871.3 1239 47.0
Lj4A53T53 Lonicera japonica HOM05D004348 ORTHO05D006191 9.4e-250 867.8 1243 46.7
MD08G1105600 Malus domestica HOM05D004348 ORTHO05D006191 3.0e-248 862.8 1223 46.1
Nn5g30212 Nelumbo nucifera HOM05D004348 ORTHO05D006191 3.3e-247 859.4 1260 45.5
MELO3C016737.2 Cucumis melo HOM05D004348 ORTHO05D006191 2.2e-246 856.7 1231 47.3
Duzib093G0393 Durio zibethinus HOM05D004348 ORTHO05D006191 4.1e-245 852.4 1220 47.5
Gorai.002G131100 Gossypium raimondii HOM05D004348 ORTHO05D006191 7.0e-245 851.7 1227 46.8
GSVIVG01009553001 Vitis vinifera HOM05D004348 ORTHO05D006191 2.9e-243 846.3 1274 45.4
Gohir.D01G106800 Gossypium hirsutum HOM05D004348 ORTHO05D006191 1.5e-242 844.0 1226 46.9
FAN27G3414 Fragaria x ananassa HOM05D004348 ORTHO05D006191 5.5e-242 842.0 1259 46.3
Thecc.08G012500 Theobroma cacao HOM05D004348 ORTHO05D006191 3.6e-241 839.3 1235 46.7
Hma1.2p1_0337F.1_g129300 Hydrangea macrophylla HOM05D004348 ORTHO05D006191 7.7e-236 821.6 1237 44.6
Manes.05G171200 Manihot esculenta HOM05D004348 ORTHO05D006191 1.7e-235 820.5 1239 45.0
Potri.014G034100 Populus trichocarpa HOM05D004348 ORTHO05D006191 1.7e-235 820.5 1233 44.7
PGR031G2748 Punica granatum HOM05D004348 ORTHO05D006191 5.0e-235 818.9 1233 45.1
Lalb_Chr24g0399211 Lupinus albus HOM05D004348 ORTHO05D006191 1.9e-234 817.0 1247 44.6
CANSAT78G0057 Cannabis sativa HOM05D004348 ORTHO05D006191 9.4e-234 814.7 1231 44.8
Sabra14G0024200 Salix brachista HOM05D004348 ORTHO05D006191 2.0e-231 807.0 1242 45.2
CSS0012651 Camellia sinensis var. sinensis HOM05D004348 ORTHO05D006191 1.3e-230 804.3 1230 44.6
vmacro21553 Vaccinium macrocarpon HOM05D004348 ORTHO05D006191 3.7e-230 802.7 1237 43.8
Cpa.g.c24415.13 Carica papaya HOM05D004348 ORTHO05D006191 4.5e-228 795.8 1222 44.3
Sp7g32110 Schrenkiella parvula HOM05D004348 ORTHO05D006191 7.7e-228 795.0 1216 43.6
Phvul.001G020000 Phaseolus vulgaris HOM05D004348 ORTHO05D006191 8.6e-227 791.6 1220 43.8
arahy.Tifrunner.gnm1.ann1.2EEB7P Arachis hypogaea HOM05D004348 ORTHO05D006191 1.5e-226 790.8 1195 44.1
arahy.Tifrunner.gnm1.ann1.3D95JG Arachis hypogaea HOM05D004348 ORTHO05D006191 1.5e-226 790.8 1195 44.1
Sed0012719 Sechium edule HOM05D004348 ORTHO05D006191 5.5e-226 788.9 1166 45.6
Aqoxy5G01277 Aquilegia oxysepala HOM05D004348 ORTHO05D006191 1.8e-224 783.9 1248 43.3
AL7G16960 Arabidopsis lyrata HOM05D004348 ORTHO05D006191 2.3e-224 783.5 1227 43.3
Medtr1g019960 Medicago truncatula HOM05D004348 ORTHO05D006191 2.3e-224 783.5 1242 44.0
Thhalv10024246m.g Eutrema salsugineum HOM05D004348 ORTHO05D006191 3.0e-224 783.1 1212 43.6
Lj5g0025546 Lotus japonicus HOM05D004348 ORTHO05D006191 8.9e-224 781.6 1225 43.9
Cc10_g04460 Coffea canephora HOM05D004348 ORTHO05D006191 4.4e-223 779.2 1243 44.3
Psat6g012000 Pisum sativum HOM05D004348 ORTHO05D006191 1.7e-222 777.3 1251 43.7
THA.LOC104806947 Tarenaya hassleriana HOM05D004348 ORTHO05D006191 1.7e-222 777.3 1227 42.7
A01p04110 Brassica napus HOM05D004348 ORTHO05D006191 9.2e-221 771.5 1223 43.6
BraA01t00399Z Brassica rapa HOM05D004348 ORTHO05D006191 1.2e-220 771.2 1217 43.7
BolC1t00433H Brassica oleracea HOM05D004348 ORTHO05D006191 2.7e-220 770.0 1222 42.7
C01p04470 Brassica napus HOM05D004348 ORTHO05D006191 4.5e-220 769.2 1225 42.7
PSO675G6987 Papaver somniferum HOM05D004348 ORTHO05D006191 4.7e-217 759.2 1238 42.2
Eucgr.F02367 Eucalyptus grandis HOM05D004348 ORTHO05D006191 1.8e-216 757.3 1240 42.6
Solyc04g079280.4 Solanum lycopersicum HOM05D004348 ORTHO05D006191 1.5e-215 754.2 1253 42.3
PGSC0003DMG400007988 Solanum tuberosum HOM05D004348 ORTHO05D006191 6.4e-214 748.8 1254 42.2
Sopen04g032870 Solanum pennellii HOM05D004348 ORTHO05D006191 3.2e-213 746.5 1240 42.3
DCAR_020931 Daucus carota HOM05D004348 ORTHO05D006191 6.0e-212 742.3 1156 43.9
Nitab4.5_0000068g0550 Nicotiana tabacum HOM05D004348 ORTHO05D006191 7.8e-212 741.9 1231 41.9
Oeu003300.1 Olea europaea HOM05D004348 ORTHO05D006191 1.3e-211 741.1 1248 42.3
Rhsim06G0047100 Rhododendron simsii HOM05D004348 ORTHO05D006191 6.6e-211 738.8 1209 42.9
Actinidia15256 Actinidia chinensis HOM05D004348 ORTHO05D006191 2.1e-209 733.8 1044 45.2
Oeu057258.1 Olea europaea HOM05D004348 ORTHO05D006191 4.7e-209 732.6 1238 42.6
VMungo0647G0261 Vigna mungo HOM05D004348 ORTHO05D006191 4.4e-207 726.1 1223 42.2
Sc02g0006980 Simmondsia chinensis HOM05D004348 ORTHO05D006191 6.0e-204 715.7 1191 42.7
AUR62039313 Chenopodium quinoa HOM05D004348 ORTHO05D006191 7.8e-204 715.3 1083 44.3
AUR62022445 Chenopodium quinoa HOM05D004348 ORTHO05D006191 1.1e-202 711.4 1080 44.0
SGA_v2.0_scaffold226G43137 Striga asiatica HOM05D004348 ORTHO05D006191 4.3e-202 709.5 1164 42.2
EL10Ac1g01783 Beta vulgaris HOM05D004348 ORTHO05D006191 5.6e-202 709.1 1146 42.1
Hund26625 Selenicereus undatus HOM05D004348 ORTHO05D006191 2.1e-201 707.2 1251 42.4
Dinv39334 Davidia involucrata HOM05D004348 ORTHO05D006191 1.3e-198 698.0 1034 45.7
Glyma.17G244300 Glycine max HOM05D004348 ORTHO05D006191 1.9e-197 694.1 1143 42.6
Dinv35980 Davidia involucrata HOM05D004348 ORTHO05D006191 4.1e-197 693.0 586 61.9
Ca_13305_v3 Cicer arietinum L. HOM05D004348 ORTHO05D006191 3.5e-196 689.9 1204 41.9
Peaxi162Scf00528g00825 Petunia axillaris HOM05D004348 ORTHO05D006191 7.6e-191 672.2 1209 40.9
CDE10G0798 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 6.4e-190 669.1 1235 39.8
Ciclev10000175m.g Citrus clementina HOM05D004348 ORTHO05D006191 5.1e-187 659.4 582 59.6
CDE10G0919 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 8.1e-185 652.1 1138 40.5
Gohir.A01G118500 Gossypium hirsutum HOM05D004348 ORTHO05D006191 1.2e-183 648.3 580 61.4
CsaV3_4G034150 Cucumis sativus L. HOM05D004348 ORTHO05D006191 2.0e-183 647.5 584 60.3
HanXRQChr02g0038751 Helianthus annuus HOM05D004348 ORTHO05D006191 1.1e-181 641.7 1225 39.5
TPR.G13698 Trifolium pratense HOM05D004348 ORTHO05D006191 5.4e-181 639.4 1095 41.2
ATR1159G040 Amborella trichopoda HOM05D004348 ORTHO05D006191 7.1e-181 639.0 1253 39.3
ECA247G1923 Erigeron canadensis HOM05D004348 ORTHO05D006191 1.3e-179 634.8 1203 40.1
Sed0015301 Sechium edule HOM05D004348 ORTHO05D006191 3.6e-177 626.7 583 58.1
Migut.N02696 Erythranthe guttata HOM05D004348 ORTHO05D006191 2.6e-175 620.5 1208 38.3
CAN.G371.44 Capsicum annuum HOM05D004348 ORTHO05D006191 1.8e-171 607.8 582 56.7
Lsat_1_v5_gn_4_124060 Lactuca sativa HOM05D004348 ORTHO05D006191 3.0e-171 607.1 1251 37.2
Carub.0007s0605 Capsella rubella HOM05D004348 ORTHO05D006191 4.8e-169 599.7 587 54.5
CARHR242470 Cardamine hirsuta HOM05D004348 ORTHO05D006191 6.2e-169 599.4 587 55.7
AT4G34310 Arabidopsis thaliana HOM05D004348 ORTHO05D006191 6.9e-168 595.9 587 55.0
HanXRQChr16g0507461 Helianthus annuus HOM05D004348 ORTHO05D006191 5.5e-165 586.3 1148 38.4
MBI06_g27707_MAGBIO Magnolia biondii HOM05D004348 ORTHO05D006191 1.8e-163 581.3 1016 42.2
Glyma.14G081100 Glycine max HOM05D004348 ORTHO05D006191 1.9e-157 561.2 546 55.5
ECA232G4920 Erigeron canadensis HOM05D004348 ORTHO05D006191 3.5e-156 557.0 1174 36.5
Nitab4.5_0005301g0040 Nicotiana tabacum HOM05D004348 ORTHO05D006191 4.1e-152 543.5 1020 39.5
SHI08301 Sapria himalayana HOM05D004348 ORTHO05D006191 2.1e-148 531.2 1051 37.2
Aa31LG2G16180 Aethionema arabicum HOM05D004348 ORTHO05D006191 1.5e-146 525.0 538 52.8
Zm00001eb006390 Zea mays HOM05D004348 ORTHO05D006191 3.7e-145 520.4 1207 35.7
HPP92_019297 Vanilla planifolia HOM05D004348 ORTHO05D006191 1.4e-133 481.9 1143 34.6
SEGI_07910 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 2.2e-126 458.0 568 47.2
Os03g0185500 Oryza sativa ssp. japonica HOM05D004348 ORTHO05D006191 5.5e-125 453.4 507 49.3
unitig_26.g10059 Utricularia gibba HOM05D004348 ORTHO05D006191 4.1e-120 437.2 955 36.2
Mapoly0033s0109 Marchantia polymorpha HOM05D004348 ORTHO05D006191 6.8e-107 393.3 1206 31.2
SMO144G0009 Selaginella moellendorffii HOM05D004348 ORTHO05D006191 4.0e-99 367.5 1099 31.0
AagrBONN_evm.TU.Sc2ySwM_344.1636 Anthoceros agrestis HOM05D004348 ORTHO05D006191 5.2e-99 367.1 1099 31.2
Potri.002G128201 Populus trichocarpa HOM05D004348 ORTHO05D006191 1.7e-97 362.1 294 63.6
Pp3c17_5660 Physcomitrium patens HOM05D004348 ORTHO05D006191 1.2e-87 329.3 1100 30.1
SEGI_03031 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 4.6e-79 300.8 393 45.5
Lsat_1_v5_gn_8_33681 Lactuca sativa HOM05D004348 ORTHO05D006191 5.1e-70 270.8 734 35.3
CiPaw.16G046800 Carya illinoinensis HOM05D004348 ORTHO05D006191 1.4e-59 236.1 129 88.4
MD08G1105800 Malus domestica HOM05D004348 ORTHO05D006191 4.5e-58 231.1 129 83.7
Aa31LG2G16170 Aethionema arabicum HOM05D004348 ORTHO05D006191 6.4e-57 227.3 255 58.0
HPP92_028299 Vanilla planifolia HOM05D004348 ORTHO05D006191 6.7e-54 217.2 128 78.1
SHI08298 Sapria himalayana HOM05D004348 ORTHO05D006191 1.9e-53 215.7 132 77.3
unitig_26.g10060 Utricularia gibba HOM05D004348 ORTHO05D006191 1.3e-52 213.0 129 78.3
Lsat_1_v5_gn_1_20621 Lactuca sativa HOM05D004348 ORTHO05D006191 5.3e-51 207.6 241 54.8
CBR_g45541 Chara braunii HOM05D004348 ORTHO05D006191 2.1e-47 195.7 590 29.0
Haze_18739 Corylus avellana HOM05D004348 ORTHO05D006191 4.2e-40 171.4 150 64.7
Lsat_1_v5_gn_9_98160 Lactuca sativa HOM05D004348 ORTHO05D005602 9.3e-40 170.2 122 77.9
Lsat_1_v5_gn_1_21400 Lactuca sativa HOM05D004348 ORTHO05D006191 1.7e-33 149.4 151 58.9
Lsat_1_v5_gn_1_42721 Lactuca sativa HOM05D004348 ORTHO05D006191 1.7e-33 149.4 151 58.9
Lsat_1_v5_gn_9_17721 Lactuca sativa HOM05D004348 ORTHO05D006191 1.7e-33 149.4 151 58.9
HPP92_019296 Vanilla planifolia HOM05D004348 ORTHO05D006191 6.3e-28 131.0 82 76.8
SEGI_30856 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 7.7e-26 124.0 206 39.3
SEGI_03645 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 1.0e-25 123.6 205 39.5
TPR.G40548 Trifolium pratense HOM05D004348 ORTHO05D006191 1.1e-24 120.2 73 79.5
MSTRG.22274 Avicennia marina HOM05D004348 ORTHO05D006191 1.9e-24 119.4 171 39.2
Atru.chr1.1667 Acer truncatum HOM05D004348 ORTHO05D006191 5.5e-24 117.9 157 50.3
CAN.G371.43 Capsicum annuum HOM05D004348 ORTHO05D006191 1.2e-23 116.7 187 47.1
GSVIVG01009550001 Vitis vinifera HOM05D004348 ORTHO05D006191 1.3e-12 80.1 54 74.1
SGA_v2.0_scaffold6G03459 Striga asiatica HOM05D004348 ORTHO05D006191 3.7e-12 78.6 52 71.2
Cre16.g686501 Chlamydomonas reinhardtii HOM05D004348 ORTHO05D006191 1.2e-10 73.6 239 29.3
SGA_v2.0_scaffold162G37946 Striga asiatica HOM05D004348 ORTHO05D006191 1.9e-08 66.2 31 90.3
Psat0s4914g0040 Pisum sativum HOM05D001376 ORTHO05D003384 5.5e-08 64.7 52 65.4
PRCOL_00001182 Prasinoderma coloniale HOM05D004348 ORTHO05D006191 7.2e-08 64.3 278 25.5
Mapoly0017s0011 Marchantia polymorpha HOM05D004348 ORTHO05D006191 2.3e-06 59.3 124 41.1


User provided reference genes

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