Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 1.2e-200 703.0 352 100.0
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 2.8e-194 681.8 369 93.5
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 2.0e-168 595.9 371 80.3
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 5.0e-167 591.3 424 72.2
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 1.3e-159 566.6 285 98.6
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 5.0e-159 564.7 369 76.7
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 3.6e-157 558.5 362 77.1
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 1.8e-156 556.2 345 78.8
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 4.0e-156 555.1 359 74.4
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 1.5e-155 553.1 347 78.1
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 1.5e-155 553.1 362 76.8
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 4.4e-155 551.6 369 74.5
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 7.5e-155 550.8 369 74.5
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 1.7e-154 549.7 366 75.1
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 6.3e-154 547.7 365 75.3
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 1.8e-153 546.2 376 72.3
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 2.4e-153 545.8 369 74.8
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 1.2e-152 543.5 369 74.0
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.0e-152 542.7 362 75.1
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.5e-152 541.6 362 75.1
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 7.7e-152 540.8 369 74.3
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 1.1e-150 537.0 366 72.7
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 1.5e-150 536.6 358 75.4
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 4.2e-150 535.0 367 72.8
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.2e-150 534.3 362 74.0
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 3.6e-149 531.9 365 72.6
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 6.1e-149 531.2 366 72.1
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 8.0e-149 530.8 355 75.8
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 1.8e-148 529.6 355 73.5
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 8.9e-148 527.3 369 70.7
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 8.9e-148 527.3 367 71.9
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 5.7e-147 524.6 366 71.0
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 7.5e-147 524.2 369 70.7
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 2.9e-146 522.3 369 71.5
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 4.9e-146 521.5 377 69.5
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.4e-145 520.0 364 72.0
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 1.4e-145 520.0 374 69.5
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 1.8e-145 519.6 366 71.6
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 1.8e-145 519.6 365 70.4
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 3.2e-145 518.8 398 66.1
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 4.1e-145 518.5 366 69.9
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 4.1e-145 518.5 377 69.8
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 5.4e-145 518.1 367 70.0
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 7.0e-145 517.7 368 69.3
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 9.2e-145 517.3 353 74.2
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 2.3e-143 512.7 362 69.6
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 8.6e-143 510.8 364 70.6
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 8.6e-143 510.8 364 70.6
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.1e-142 510.4 369 70.2
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 1.5e-142 510.0 368 69.3
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.5e-142 510.0 369 69.9
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 1.5e-142 510.0 322 78.9
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 1.5e-142 510.0 366 69.7
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 1.9e-142 509.6 364 69.0
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 3.3e-142 508.8 368 69.3
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 3.3e-142 508.8 367 70.3
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 4.3e-142 508.4 370 69.5
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 5.6e-142 508.1 367 70.0
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 1.6e-141 506.5 367 69.8
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 2.8e-141 505.8 355 70.4
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 3.6e-141 505.4 367 69.5
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 6.2e-141 504.6 350 71.1
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 6.2e-141 504.6 350 71.1
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 6.2e-141 504.6 358 67.6
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 2.3e-140 502.7 362 68.5
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 3.1e-140 502.3 361 68.4
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 5.2e-140 501.5 368 68.2
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 8.9e-140 500.7 368 67.7
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 1.2e-139 500.4 368 68.5
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 4.4e-139 498.4 369 67.5
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 4.4e-139 498.4 351 73.5
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 7.5e-139 497.7 393 64.9
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 2.2e-138 496.1 374 67.4
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 4.9e-138 495.0 368 67.4
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 6.4e-138 494.6 368 67.9
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 6.4e-138 494.6 348 69.8
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 8.3e-138 494.2 368 67.7
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 4.1e-137 491.9 368 67.4
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 7.0e-137 491.1 382 67.0
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 1.6e-136 490.0 364 67.6
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 1.7e-135 486.5 363 66.9
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 1.5e-134 483.4 368 66.8
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 1.9e-134 483.0 348 68.7
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 4.3e-134 481.9 390 63.1
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 9.5e-134 480.7 338 70.1
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 4.7e-133 478.4 369 65.9
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 6.2e-133 478.0 366 64.8
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 8.1e-133 477.6 360 65.6
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.1e-132 477.2 390 62.8
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.8e-132 476.5 390 62.8
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 5.2e-132 474.9 394 63.5
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 3.4e-131 472.2 362 65.5
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 9.8e-131 470.7 368 64.7
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 1.2e-128 463.8 314 72.6
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 4.6e-128 461.8 322 70.8
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 6.0e-128 461.5 271 81.5
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 2.1e-125 453.0 324 70.7
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 8.9e-124 447.6 368 64.4
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 9.9e-123 444.1 279 78.9
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 9.9e-123 444.1 354 62.1
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 4.9e-122 441.8 356 64.0
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.1e-121 440.7 352 63.9
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 2.1e-120 436.4 362 61.3
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 1.7e-119 433.3 367 61.6
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.9e-119 432.2 354 63.3
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 1.2e-117 427.2 285 74.7
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 4.0e-116 422.2 291 69.8
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 5.8e-115 418.3 348 64.4
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 1.4e-113 413.7 285 71.2
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 5.1e-111 405.2 352 63.1
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.4e-108 397.1 281 70.1
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.7e-106 390.2 390 55.6
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 2.9e-98 362.8 260 70.4
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 3.2e-97 359.4 365 55.3
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 3.7e-93 345.9 286 58.7
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 1.0e-90 337.8 347 51.3
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 2.2e-90 336.7 346 50.3
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 3.2e-89 332.8 358 53.1
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 1.6e-88 330.5 362 52.2
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 1.6e-85 320.5 362 51.4
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 2.1e-85 320.1 317 49.5
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 3.1e-84 316.2 339 47.8
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 5.0e-82 308.9 336 45.8
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 4.8e-53 212.6 152 66.4
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 4.7e-48 196.1 328 36.0
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 1.5e-41 174.5 135 63.0
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 6.1e-40 169.1 374 31.8
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 1.4e-39 167.9 127 67.7
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.1e-33 148.3 121 62.0
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 5.6e-33 146.0 182 45.1
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 2.1e-32 144.1 108 70.4
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.6e-30 137.1 85 76.5
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.4e-30 136.7 85 76.5
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 1.1e-28 131.7 107 64.5
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.8e-28 131.0 88 71.6
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.2e-28 130.2 80 75.0
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.3e-26 124.0 141 48.9
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 5.0e-26 122.9 110 56.4
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 1.1e-25 121.7 338 28.1
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 1.5e-25 121.3 110 56.4
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 2.1e-24 117.5 87 69.0
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.1e-23 113.6 80 68.8
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 4.0e-23 113.2 334 26.3
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.5e-22 111.3 79 68.4
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.5e-22 111.3 79 68.4
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.0e-22 110.9 80 67.5
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.4e-22 110.2 70 72.9
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 4.4e-22 109.8 83 68.7
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.4e-22 109.8 80 68.8
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.4e-22 109.8 79 67.1
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.8e-22 109.4 79 67.1
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.9e-21 107.1 83 63.9
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.1e-20 105.1 80 66.2
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 7.0e-20 102.4 104 57.7
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.0e-19 100.9 102 54.9
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 3.3e-17 93.6 70 65.7
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 6.8e-15 85.9 45 88.9
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 9.8e-14 82.0 72 63.9
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 1.3e-13 81.6 51 76.5
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.3e-13 81.6 55 74.5
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 4.7e-08 63.2 43 69.8
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.7e-08 63.2 44 75.0
Gohir.D01G066700 Gossypium hirsutum HOM05D000706 ORTHO05D013538 5.2e-07 59.7 49 55.1
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 5.2e-07 59.7 50 64.0
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 6.8e-07 59.3 34 85.3
Gohir.D09G143401 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.2e-06 58.5 49 55.1
Gorai.007G356500 Gossypium raimondii HOM05D000706 ORTHO05D013538 1.2e-06 58.5 49 55.1
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 2.0e-06 57.8 33 81.8
Gohir.D06G127100 Gossypium hirsutum HOM05D000706 ORTHO05D013538 2.0e-06 57.8 37 64.9
Gohir.D09G037400 Gossypium hirsutum HOM05D000706 ORTHO05D013538 2.0e-06 57.8 37 64.9
Gohir.D03G122500 Gossypium hirsutum HOM05D000706 ORTHO05D013538 2.6e-06 57.4 84 38.1
Gohir.D13G142000 Gossypium hirsutum HOM05D000706 ORTHO05D013538 2.6e-06 57.4 49 53.1
Gohir.D01G081300 Gossypium hirsutum HOM05D000706 ORTHO05D013538 5.8e-06 56.2 37 62.2
Gohir.D06G138051 Gossypium hirsutum HOM05D000706 ORTHO05D013538 5.8e-06 56.2 37 64.9


User provided reference genes

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