Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 5.5e-133 477.6 241 100.0
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 5.5e-133 477.6 241 100.0
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 1.9e-101 372.9 244 77.0
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 6.2e-100 367.9 241 77.2
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 3.4e-90 335.5 247 69.6
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 3.7e-89 332.0 176 93.2
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 7.8e-87 324.3 247 66.8
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 2.3e-86 322.8 243 67.1
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 3.9e-86 322.0 241 68.0
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 6.6e-86 321.2 241 66.8
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 2.1e-84 316.2 247 66.0
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 8.1e-84 314.3 245 66.1
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 8.1e-84 314.3 246 64.6
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 3.1e-83 312.4 241 64.7
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 3.4e-82 308.9 241 64.7
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 5.8e-82 308.1 246 65.0
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 5.8e-82 308.1 246 65.0
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 9.9e-82 307.4 241 63.5
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.3e-81 307.0 242 64.9
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 1.3e-81 307.0 241 64.7
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 2.2e-81 306.2 239 64.9
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 3.7e-81 305.4 243 65.4
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 3.7e-81 305.4 241 64.3
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 4.9e-81 305.1 244 66.4
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 2.4e-80 302.8 245 64.5
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 4.1e-80 302.0 244 64.8
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 7.1e-80 301.2 250 64.0
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 9.2e-80 300.8 241 63.9
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 9.2e-80 300.8 246 64.2
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 2.7e-79 299.3 241 62.7
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 3.5e-79 298.9 250 60.8
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 7.8e-79 297.7 250 66.0
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 1.7e-78 296.6 241 63.1
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 3.9e-78 295.4 249 62.2
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 5.1e-78 295.0 243 61.7
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 1.5e-77 293.5 241 63.9
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.5e-77 293.5 241 62.7
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 4.3e-77 292.0 244 63.9
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 4.3e-77 292.0 240 61.7
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 4.3e-77 292.0 249 61.4
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.6e-77 290.8 243 63.8
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 9.6e-77 290.8 245 63.3
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 9.6e-77 290.8 243 61.3
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 1.6e-76 290.0 243 61.3
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 1.6e-76 290.0 246 60.6
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 2.1e-76 289.7 241 61.0
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 6.2e-76 288.1 249 60.2
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 1.4e-75 287.0 240 63.8
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.4e-75 287.0 245 61.6
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.1e-75 285.8 247 61.5
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 3.1e-75 285.8 241 63.9
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 8.9e-75 284.3 243 61.3
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 8.9e-75 284.3 246 61.4
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 1.2e-74 283.9 242 62.8
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 2.0e-74 283.1 243 63.4
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 2.0e-74 283.1 238 60.1
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 3.4e-74 282.3 247 60.7
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 9.9e-74 280.8 244 61.5
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 9.9e-74 280.8 241 60.2
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 1.7e-73 280.0 244 60.2
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 4.9e-73 278.5 245 61.2
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 8.4e-73 277.7 241 59.8
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 2.4e-72 276.2 243 59.3
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 5.4e-72 275.0 239 63.2
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 9.3e-72 274.2 244 59.0
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.7e-71 272.7 258 58.5
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 4.6e-71 271.9 243 59.7
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.0e-70 270.8 185 70.3
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 1.7e-70 270.0 232 60.3
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 2.3e-70 269.6 259 56.4
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 3.0e-70 269.2 243 58.8
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 3.0e-70 269.2 243 58.8
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 5.1e-70 268.5 243 60.1
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 6.6e-70 268.1 242 57.4
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 6.6e-70 268.1 243 58.8
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 6.6e-70 268.1 243 58.8
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 6.6e-70 268.1 244 57.4
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 8.7e-70 267.7 249 59.0
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 8.7e-70 267.7 241 56.4
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 1.1e-69 267.3 254 55.9
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.9e-69 266.5 163 78.5
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.5e-69 266.2 243 56.0
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 5.6e-69 265.0 236 59.3
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 9.6e-69 264.2 179 69.3
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 1.3e-68 263.8 245 59.6
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 1.3e-68 263.8 244 59.4
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 1.3e-68 263.8 242 58.3
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.6e-68 263.5 180 69.4
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 2.1e-68 263.1 180 69.4
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 3.6e-68 262.3 226 61.5
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 3.6e-68 262.3 243 58.4
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 3.6e-68 262.3 243 58.4
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 3.6e-68 262.3 243 57.2
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 4.8e-68 261.9 178 70.8
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 4.8e-68 261.9 180 69.4
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.1e-68 261.2 178 70.8
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 8.1e-68 261.2 243 57.2
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 1.8e-67 260.0 245 59.2
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 1.8e-67 260.0 257 54.1
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 2.4e-67 259.6 241 55.6
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 2.4e-67 259.6 185 67.6
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 2.4e-67 259.6 245 57.1
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 2.4e-67 259.6 245 59.2
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 2.4e-67 259.6 245 59.2
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 3.1e-67 259.2 255 53.7
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 4.0e-67 258.8 186 66.7
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 5.3e-67 258.5 244 56.6
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 6.9e-67 258.1 246 55.3
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.2e-66 257.3 240 54.6
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 4.4e-66 255.4 243 56.8
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 5.8e-66 255.0 244 57.8
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 7.6e-66 254.6 242 57.4
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 7.6e-66 254.6 228 58.8
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 1.7e-65 253.4 259 52.5
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 2.9e-65 252.7 216 58.8
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 1.1e-64 250.8 241 54.4
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 2.4e-64 249.6 220 59.1
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 2.7e-63 246.1 243 54.3
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 3.0e-62 242.7 178 66.3
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 1.5e-61 240.4 221 56.1
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 1.9e-61 240.0 222 58.6
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 4.3e-61 238.8 150 76.0
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 7.4e-61 238.0 221 55.2
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.3e-60 237.3 178 63.5
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 2.1e-60 236.5 241 51.0
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 4.8e-60 235.3 175 63.4
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 1.8e-59 233.4 230 52.2
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 3.1e-59 232.6 191 60.2
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 5.3e-59 231.9 245 53.1
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.5e-58 228.8 147 74.1
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.7e-57 226.9 163 66.9
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 9.3e-56 221.1 226 55.8
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.2e-55 220.7 197 57.4
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 2.7e-55 219.5 235 53.6
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.5e-55 219.2 225 52.0
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 5.1e-54 215.3 172 59.9
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 7.4e-53 211.5 241 49.8
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 2.8e-52 209.5 240 48.3
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.3e-51 205.3 164 64.6
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 4.6e-47 192.2 163 62.0
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.6e-47 192.2 132 67.4
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.2e-44 181.4 147 63.9
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 7.6e-42 174.9 112 72.3
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 7.4e-37 158.3 218 42.7
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 2.8e-36 156.4 106 69.8
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 9.0e-35 151.4 218 41.3
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 6.7e-30 135.2 150 47.3
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 8.8e-30 134.8 161 42.9
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 8.2e-28 128.3 174 39.1
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 6.9e-27 125.2 200 36.5
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.7e-25 120.6 76 72.4
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 2.6e-18 96.7 109 51.4
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 3.5e-18 96.3 151 39.1
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 9.4e-16 88.2 86 52.3
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 8.2e-12 75.1 87 40.2
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 5.2e-06 55.8 54 44.4
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 6.8e-06 55.5 51 47.1


User provided reference genes

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