Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17483 Corylus avellana HOM05D008112 ORTHO05D010225 1.1e-47 193.0 96 100.0
Cfa018594 Carpinus fangiana HOM05D008112 ORTHO05D010225 2.3e-45 185.3 96 95.8
CiPaw.15G085200 Carya illinoinensis HOM05D008112 ORTHO05D010225 2.8e-27 125.2 101 66.3
CiPaw.16G065000 Carya illinoinensis HOM05D008112 ORTHO05D010225 7.1e-23 110.5 97 64.9
Potri.010G124900 Populus trichocarpa HOM05D008112 ORTHO05D010225 2.7e-22 108.6 99 58.6
Thecc.02G230800 Theobroma cacao HOM05D008112 ORTHO05D010225 2.7e-22 108.6 82 65.9
Potri.008G120800 Populus trichocarpa HOM05D008112 ORTHO05D010225 1.9e-20 102.4 99 57.6
Manes.14G102600 Manihot esculenta HOM05D008112 ORTHO05D010225 2.1e-19 99.0 98 56.1
Gorai.005G190400 Gossypium raimondii HOM05D008112 ORTHO05D010225 1.8e-18 95.9 96 53.1
Gohir.D02G169900 Gossypium hirsutum HOM05D008112 ORTHO05D010225 3.1e-18 95.1 96 53.1
Prupe.1G311100 Prunus persica HOM05D008112 ORTHO05D010225 3.1e-18 95.1 99 50.5
TAR622G0251 Trochodendron aralioides HOM05D008112 ORTHO05D010225 6.8e-18 94.0 94 52.1
Manes.06G068400 Manihot esculenta HOM05D008112 ORTHO05D010225 1.5e-17 92.8 94 51.1
Nn3g17844 Nelumbo nucifera HOM05D008112 ORTHO05D010225 2.6e-17 92.0 93 54.8
FAN07G1645 Fragaria x ananassa HOM05D008112 ORTHO05D010225 5.8e-17 90.9 102 52.0
RcHm_v2.0_Chr4g0435171 Rosa chinensis HOM05D008112 ORTHO05D010225 5.8e-17 90.9 103 52.4
FvH4_4g27360 Fragaria vesca HOM05D008112 ORTHO05D010225 9.9e-17 90.1 98 54.1
FAN12G3697 Fragaria x ananassa HOM05D008112 ORTHO05D010225 9.9e-17 90.1 98 54.1
FAN12G3827 Fragaria x ananassa HOM05D008112 ORTHO05D010225 9.9e-17 90.1 98 54.1
Gohir.A03G146800 Gossypium hirsutum HOM05D008112 ORTHO05D010225 9.9e-17 90.1 96 51.0
Phvul.003G035700 Phaseolus vulgaris HOM05D008112 ORTHO05D010225 2.2e-16 89.0 98 48.0
QL01p042495 Quercus lobata HOM05D008112 ORTHO05D010225 3.7e-16 88.2 75 61.3
Sabra10G0094800 Salix brachista HOM05D008112 ORTHO05D010225 8.3e-16 87.0 90 54.4
FAN22G0823 Fragaria x ananassa HOM05D008112 ORTHO05D010225 1.4e-15 86.3 102 50.0
TAR371G0405 Trochodendron aralioides HOM05D008112 ORTHO05D010225 1.9e-15 85.9 95 50.5
Glyma.08G262400 Glycine max HOM05D008112 ORTHO05D010225 3.2e-15 85.1 90 53.3
CSS0024667 Camellia sinensis var. sinensis HOM05D008112 ORTHO05D010225 1.3e-13 79.7 99 46.5
Medtr1g110820 Medicago truncatula HOM05D008112 ORTHO05D010225 8.6e-13 77.0 93 45.2
TPR.G39819 Trifolium pratense HOM05D008112 ORTHO05D010225 8.6e-13 77.0 87 46.0
Lj2g0015777 Lotus japonicus HOM05D008112 ORTHO05D010225 1.1e-12 76.6 89 46.1
Hma1.2p1_0061F.1_g033900 Hydrangea macrophylla HOM05D008112 ORTHO05D010225 1.5e-12 76.3 93 47.3
Glyma.10G274200 Glycine max HOM05D008112 ORTHO05D010225 1.9e-12 75.9 92 46.7
TPR.G1513 Trifolium pratense HOM05D008112 ORTHO05D010225 7.3e-12 73.9 94 46.8
Glyma.20G115800 Glycine max HOM05D008112 ORTHO05D010225 2.1e-11 72.4 93 44.1
Lj5g0021475 Lotus japonicus HOM05D008112 ORTHO05D010225 2.8e-11 72.0 96 42.7
Atru.chr11.70 Acer truncatum HOM05D008112 ORTHO05D010225 3.6e-11 71.6 101 43.6
TAR629G1885 Trochodendron aralioides HOM05D008112 ORTHO05D010225 4.7e-11 71.2 79 46.8
Rhsim12G0084800 Rhododendron simsii HOM05D008112 ORTHO05D010225 1.1e-10 70.1 99 40.4
Cpa.g.sc1.41 Carica papaya HOM05D008112 ORTHO05D010225 1.4e-10 69.7 98 48.0
MELO3C012251.2 Cucumis melo HOM05D008112 ORTHO05D010225 3.1e-10 68.6 88 45.5
Ciclev10017355m.g Citrus clementina HOM05D008112 ORTHO05D010225 8.9e-10 67.0 86 43.0
Lalb_Chr10g0100011 Lupinus albus HOM05D008112 ORTHO05D010225 8.9e-10 67.0 90 46.7
Phvul.007G027300 Phaseolus vulgaris HOM05D008112 ORTHO05D010225 8.9e-10 67.0 76 48.7
Lsat_1_v5_gn_4_17580 Lactuca sativa HOM05D008112 ORTHO05D010225 2.6e-09 65.5 102 43.1
MSTRG.840 Avicennia marina HOM05D008112 ORTHO05D010225 5.8e-09 64.3 99 46.5
Lalb_Chr06g0166071 Lupinus albus HOM05D008112 ORTHO05D010225 9.9e-09 63.5 90 44.4
CsaV3_5G034340 Cucumis sativus L. HOM05D008112 ORTHO05D010225 1.3e-08 63.2 81 39.5
Eucgr.B03015 Eucalyptus grandis HOM05D008112 ORTHO05D010225 2.9e-08 62.0 97 41.2
CARHR026030 Cardamine hirsuta HOM05D010181 ORTHO05D012280 1.1e-07 60.1 93 43.0
Medtr5g056935 Medicago truncatula HOM05D008112 ORTHO05D010225 1.9e-07 59.3 90 40.0
Sp1g22780 Schrenkiella parvula HOM05D010181 ORTHO05D012280 1.9e-07 59.3 96 40.6
Lalb_Chr02g0145981 Lupinus albus HOM05D008112 ORTHO05D010225 3.2e-07 58.5 99 40.4
Aqoxy3G00299 Aquilegia oxysepala HOM05D008112 ORTHO05D010225 5.4e-07 57.8 34 70.6
ClCG05G022690 Citrullus lanatus HOM05D008112 ORTHO05D010225 5.4e-07 57.8 85 38.8
BcaC05g26668 Brassica carinata HOM05D010181 ORTHO05D012280 9.3e-07 57.0 94 40.4
BraA09t39439Z Brassica rapa HOM05D010181 ORTHO05D012280 1.2e-06 56.6 93 40.9
BcaC05g26462 Brassica carinata HOM05D010181 ORTHO05D012280 1.6e-06 56.2 95 38.9
BolC5t31237H Brassica oleracea HOM05D010181 ORTHO05D012280 1.6e-06 56.2 95 38.9
A09p39360 Brassica napus HOM05D010181 ORTHO05D012280 2.7e-06 55.5 93 39.8
Sed0024639 Sechium edule HOM05D008112 ORTHO05D010225 2.7e-06 55.5 100 40.0
Aa31LG2G6430 Aethionema arabicum HOM05D010264 ORTHO05D012423 3.5e-06 55.1 71 45.1
C05p25040 Brassica napus HOM05D010181 ORTHO05D012280 3.5e-06 55.1 95 38.9
Thhalv10009743m.g Eutrema salsugineum HOM05D010181 ORTHO05D012280 3.5e-06 55.1 101 36.6
AL1G39880 Arabidopsis lyrata HOM05D010181 ORTHO05D012280 4.6e-06 54.7 91 37.4
SGA_v2.0_scaffold124G33520 Striga asiatica HOM05D008112 ORTHO05D010225 6.0e-06 54.3 97 40.2
ECA246G3993 Erigeron canadensis HOM05D008112 ORTHO05D010225 7.8e-06 53.9 89 36.0


User provided reference genes

Program Settings