Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17414 Corylus avellana HOM05D008579 ORTHO05D010245 1.6e-45 185.7 91 100.0
QL01p000876 Quercus lobata HOM05D008579 ORTHO05D010245 1.7e-18 95.9 98 56.1
Thecc.02G363200 Theobroma cacao HOM05D008579 ORTHO05D010245 1.7e-18 95.9 80 60.0
Gohir.A12G172600 Gossypium hirsutum HOM05D008579 ORTHO05D010245 8.5e-18 93.6 98 56.1
Gohir.D12G175100 Gossypium hirsutum HOM05D008579 ORTHO05D010245 8.5e-18 93.6 98 56.1
Prupe.1G303500 Prunus persica HOM05D008579 ORTHO05D010245 5.5e-17 90.9 103 49.5
Phvul.007G101400 Phaseolus vulgaris HOM05D008579 ORTHO05D010245 1.6e-16 89.4 79 55.7
Glyma.02G131300 Glycine max HOM05D008579 ORTHO05D010245 2.7e-16 88.6 90 53.3
Gorai.008G187700 Gossypium raimondii HOM05D008579 ORTHO05D010245 2.7e-16 88.6 101 54.5
Glyma.20G185000 Glycine max HOM05D008579 ORTHO05D010245 2.3e-15 85.5 87 54.0
Ciclev10033191m.g Citrus clementina HOM05D008579 ORTHO05D010245 3.0e-15 85.1 95 54.7
Glyma.01G090400 Glycine max HOM05D008579 ORTHO05D010245 6.7e-15 84.0 91 53.8
Lj3g0023630 Lotus japonicus HOM05D008579 ORTHO05D010245 6.7e-15 84.0 90 46.7
Lj5g0012204 Lotus japonicus HOM05D008579 ORTHO05D010245 6.7e-15 84.0 90 46.7
Glyma.10G205400 Glycine max HOM05D008579 ORTHO05D010245 2.5e-14 82.0 87 52.9
Nn4g23678 Nelumbo nucifera HOM05D008579 ORTHO05D010245 4.3e-14 81.3 95 50.5
Hma1.2p1_0605F.1_g187880 Hydrangea macrophylla HOM05D008579 ORTHO05D010245 1.7e-13 79.3 76 52.6
Phvul.003G025100 Phaseolus vulgaris HOM05D008579 ORTHO05D010245 3.7e-13 78.2 81 50.6
COL.COLO4_07854 Corchorus olitorius HOM05D008579 ORTHO05D010245 8.2e-13 77.0 43 79.1
RcHm_v2.0_Chr4g0436131 Rosa chinensis HOM05D008579 ORTHO05D010245 8.2e-13 77.0 73 53.4
Lalb_Chr02g0151861 Lupinus albus HOM05D008579 ORTHO05D010245 1.4e-12 76.3 85 52.9
Potri.010G131500 Populus trichocarpa HOM05D008579 ORTHO05D010245 4.1e-12 74.7 77 45.5
TPR.G2700 Trifolium pratense HOM05D008579 ORTHO05D010245 9.1e-12 73.6 72 54.2
Potri.008G114600 Populus trichocarpa HOM05D008579 ORTHO05D010245 1.2e-11 73.2 93 41.9
Sed0026635 Sechium edule HOM05D008579 ORTHO05D010245 1.2e-11 73.2 96 44.8
Manes.06G074200 Manihot esculenta HOM05D008579 ORTHO05D010245 1.5e-11 72.8 76 50.0
Eucgr.G02368 Eucalyptus grandis HOM05D008579 ORTHO05D010245 2.0e-11 72.4 82 46.3
TPR.G9816 Trifolium pratense HOM05D008579 ORTHO05D010245 2.0e-11 72.4 68 51.5
Lalb_Chr17g0341821 Lupinus albus HOM05D008579 ORTHO05D010245 2.6e-11 72.0 80 50.0
Lalb_Chr04g0255041 Lupinus albus HOM05D008579 ORTHO05D010245 4.5e-11 71.2 92 48.9
Lsat_1_v5_gn_4_17220 Lactuca sativa HOM05D008579 ORTHO05D010245 1.3e-10 69.7 71 52.1
Manes.14G096100 Manihot esculenta HOM05D008579 ORTHO05D010245 2.2e-10 68.9 92 44.6
Nn3g17676 Nelumbo nucifera HOM05D008579 ORTHO05D010245 2.9e-10 68.6 72 50.0
ClCG05G023140 Citrullus lanatus HOM05D008579 ORTHO05D010245 3.8e-10 68.2 81 48.1
Sed0027044 Sechium edule HOM05D008579 ORTHO05D010245 3.8e-10 68.2 74 45.9
Medtr1g093920 Medicago truncatula HOM05D008579 ORTHO05D010245 5.0e-10 67.8 89 44.9
CsaV3_5G033860 Cucumis sativus L. HOM05D008579 ORTHO05D010245 1.1e-09 66.6 83 47.0
MELO3C012204.2 Cucumis melo HOM05D008579 ORTHO05D010245 1.4e-09 66.2 60 53.3
Lj2g0027990 Lotus japonicus HOM05D008579 ORTHO05D010245 1.9e-09 65.9 78 51.3
A02p15330 Brassica napus HOM05D010485 ORTHO05D010245 3.2e-09 65.1 78 48.7
BraA02t06594Z Brassica rapa HOM05D010485 ORTHO05D010245 3.2e-09 65.1 78 48.7
CSS0039536 Camellia sinensis var. sinensis HOM05D008579 ORTHO05D010245 4.2e-09 64.7 60 51.7
ClCG01G005780 Citrullus lanatus HOM05D008579 ORTHO05D010245 4.2e-09 64.7 74 48.6
Thhalv10019748m.g Eutrema salsugineum HOM05D010485 ORTHO05D010245 4.2e-09 64.7 74 47.3
Lsat_1_v5_gn_3_57261 Lactuca sativa HOM05D008579 ORTHO05D010245 1.2e-08 63.2 70 52.9
C04p37640 Brassica napus HOM05D010485 ORTHO05D010245 1.6e-08 62.8 78 47.4
BolC4t25334H Brassica oleracea HOM05D010485 ORTHO05D010245 1.6e-08 62.8 78 47.4
BcaC03g14985 Brassica carinata HOM05D010485 ORTHO05D010245 2.1e-08 62.4 78 47.4
C02p25180 Brassica napus HOM05D010485 ORTHO05D010245 2.1e-08 62.4 78 47.4
BolC2t08597H Brassica oleracea HOM05D010485 ORTHO05D010245 2.1e-08 62.4 78 47.4
BcaB05g24410 Brassica carinata HOM05D010485 ORTHO05D010245 2.7e-08 62.0 78 44.9
Sp5g23880 Schrenkiella parvula HOM05D010485 ORTHO05D010245 3.6e-08 61.6 78 43.6
CARHR061590 Cardamine hirsuta HOM05D010485 ORTHO05D010245 7.9e-08 60.5 79 45.6
AL2G27710 Arabidopsis lyrata HOM05D010485 ORTHO05D010245 1.8e-07 59.3 79 41.8
THA.LOC104805239 Tarenaya hassleriana HOM05D010662 ORTHO05D012734 3.9e-07 58.2 71 43.7
Thhalv10005200m.g Eutrema salsugineum HOM05D010662 ORTHO05D012734 8.8e-07 57.0 82 39.0
MELO3C005351.2 Cucumis melo HOM05D065573 ORTHO05D010245 1.1e-06 56.6 73 47.9
AT1G68765 Arabidopsis thaliana HOM05D010485 ORTHO05D010245 1.5e-06 56.2 81 43.2
BcaC08g46326 Brassica carinata HOM05D010485 ORTHO05D010245 1.5e-06 56.2 81 44.4
A07p35150 Brassica napus HOM05D010485 ORTHO05D010245 1.5e-06 56.2 81 44.4
C06p41120 Brassica napus HOM05D010485 ORTHO05D010245 1.5e-06 56.2 81 44.4
BolC6t39313H Brassica oleracea HOM05D010485 ORTHO05D010245 1.5e-06 56.2 81 44.4
BraA07t31108Z Brassica rapa HOM05D010485 ORTHO05D010245 1.5e-06 56.2 81 44.4
Sed0005216 Sechium edule HOM05D008579 ORTHO05D010245 5.7e-06 54.3 32 65.6
Carub.0002s1533 Capsella rubella HOM05D010485 ORTHO05D010245 7.4e-06 53.9 79 38.0
CiPaw.15G002000 Carya illinoinensis HOM05D008579 ORTHO05D010245 7.4e-06 53.9 63 50.8
CsaV3_5G028910 Cucumis sativus L. HOM05D065573 ORTHO05D010245 7.4e-06 53.9 72 44.4


User provided reference genes

Program Settings