Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 1.6e-190 669.5 386 100.0
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 1.7e-176 622.9 354 94.4
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 1.5e-119 433.7 384 71.9
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 3.4e-116 422.5 365 65.5
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 3.7e-115 419.1 360 66.1
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 4.9e-115 418.7 365 65.5
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 4.9e-115 418.7 361 66.5
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 6.4e-115 418.3 363 65.6
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 8.3e-115 417.9 368 66.3
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 4.1e-114 415.6 362 63.3
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 6.0e-113 411.8 364 65.4
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 6.0e-113 411.8 309 72.8
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 1.1e-111 407.5 361 65.7
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 7.3e-111 404.8 372 64.5
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 9.5e-111 404.4 357 64.1
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 1.6e-110 403.7 356 64.3
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 2.1e-110 403.3 287 73.5
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 2.8e-110 402.9 355 63.7
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 8.0e-110 401.4 251 82.1
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 2.3e-109 399.8 284 74.3
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 2.3e-109 399.8 284 74.3
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 4.0e-109 399.1 307 71.0
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 5.2e-109 398.7 320 67.2
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 8.9e-109 397.9 338 74.0
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 3.4e-108 396.0 305 68.9
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 3.4e-108 396.0 302 69.9
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 4.4e-108 395.6 300 71.3
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 4.4e-108 395.6 300 71.3
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 4.4e-108 395.6 362 61.9
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 5.8e-108 395.2 293 70.6
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 5.8e-108 395.2 378 61.6
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 7.5e-108 394.8 377 59.4
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 9.8e-108 394.4 287 73.5
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 9.8e-108 394.4 378 61.6
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 2.2e-107 393.3 244 80.3
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 2.2e-107 393.3 244 80.3
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 2.2e-107 393.3 282 72.0
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 3.7e-107 392.5 256 77.3
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 6.4e-107 391.7 321 66.7
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 6.4e-107 391.7 346 63.6
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 2.4e-106 389.8 256 77.0
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 3.2e-106 389.4 286 70.6
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 3.2e-106 389.4 321 66.7
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 3.2e-106 389.4 244 79.5
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 7.0e-106 388.3 315 66.3
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 7.0e-106 388.3 305 67.5
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 9.2e-106 387.9 414 54.8
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 2.0e-105 386.7 324 66.4
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 2.7e-105 386.3 303 68.0
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 2.7e-105 386.3 303 68.0
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 3.5e-105 386.0 293 70.6
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 4.6e-105 385.6 318 68.2
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 7.8e-105 384.8 317 67.5
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 7.8e-105 384.8 283 70.7
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 1.0e-104 384.4 274 73.4
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 1.0e-104 384.4 314 65.9
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 1.0e-104 384.4 322 65.8
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 1.0e-104 384.4 289 69.2
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 1.7e-104 383.6 314 65.6
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 3.0e-104 382.9 317 66.9
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 3.0e-104 382.9 224 83.5
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 3.0e-104 382.9 270 74.1
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 3.9e-104 382.5 249 77.1
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 5.0e-104 382.1 307 65.5
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 5.0e-104 382.1 317 65.9
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 6.6e-104 381.7 365 60.0
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 8.6e-104 381.3 266 73.3
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 1.1e-103 380.9 280 70.4
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 1.9e-103 380.2 317 64.7
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 2.5e-103 379.8 284 70.4
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 2.5e-103 379.8 284 70.4
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 2.5e-103 379.8 305 65.6
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 3.3e-103 379.4 291 73.9
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 3.3e-103 379.4 324 65.1
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 4.3e-103 379.0 321 65.4
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 7.3e-103 378.3 230 80.9
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 7.3e-103 378.3 365 57.5
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 7.3e-103 378.3 315 66.0
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 9.5e-103 377.9 296 68.2
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 1.6e-102 377.1 286 68.9
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 2.1e-102 376.7 300 67.0
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 2.8e-102 376.3 230 79.6
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 4.7e-102 375.6 302 65.9
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 4.7e-102 375.6 298 67.8
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 8.1e-102 374.8 306 67.0
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 1.1e-101 374.4 230 80.0
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 1.1e-101 374.4 298 67.4
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 1.8e-101 373.6 331 64.0
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 1.8e-101 373.6 307 65.1
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 4.0e-101 372.5 222 82.0
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 8.9e-101 371.3 296 65.5
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 9.9e-100 367.9 276 69.6
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 9.9e-100 367.9 324 63.6
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 3.7e-99 365.9 333 61.3
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 3.7e-99 365.9 293 67.9
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 3.7e-99 365.9 252 72.2
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 4.9e-99 365.5 214 83.2
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.1e-98 364.4 225 78.2
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 2.4e-98 363.2 295 64.1
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 1.0e-96 357.8 382 55.5
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 1.5e-95 354.0 212 79.7
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 4.3e-95 352.4 225 76.9
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 5.6e-95 352.1 270 65.9
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 9.5e-95 351.3 226 76.1
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 1.2e-94 350.9 332 59.0
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 4.7e-94 349.0 292 61.6
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 2.2e-91 340.1 315 59.4
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 5.4e-90 335.5 189 85.7
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 2.5e-87 326.6 223 72.6
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 7.6e-84 315.1 178 86.5
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 1.3e-83 314.3 223 69.1
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 2.2e-83 313.5 177 87.6
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 4.9e-83 312.4 317 58.0
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 1.1e-82 311.2 224 68.3
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 5.4e-82 308.9 178 86.5
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 1.1e-79 301.2 224 65.6
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 1.8e-77 293.9 223 64.6
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 2.4e-77 293.5 324 55.6
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 3.1e-77 293.1 211 70.6
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 5.3e-77 292.4 237 67.1
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 3.8e-75 286.2 234 59.8
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.1e-74 284.6 235 59.1
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 1.1e-69 268.1 163 82.2
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.9e-63 247.3 147 80.3
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 4.8e-62 242.7 130 91.5
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 4.8e-62 242.7 146 81.5
CiPaw.01G307900 Carya illinoinensis HOM05D004331 ORTHO05D004984 9.0e-61 238.4 205 65.4
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 9.7e-55 218.4 362 41.7
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 5.3e-53 212.6 127 78.7
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 9.4e-50 201.8 213 46.5
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 2.1e-49 200.7 355 41.7
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 2.7e-49 200.3 213 46.0
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 3.1e-45 186.8 315 43.5
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 6.5e-43 179.1 289 40.5
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 1.1e-42 178.3 101 84.2
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 1.4e-42 177.9 101 84.2
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 1.4e-42 177.9 101 85.1
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 5.5e-42 176.0 101 83.2
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 1.2e-41 174.9 101 83.2
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 1.2e-41 174.9 101 83.2
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 4.7e-41 172.9 101 82.2
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 4.7e-41 172.9 101 82.2
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 6.1e-41 172.6 101 82.2
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 1.4e-40 171.4 101 81.2
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 1.4e-40 171.4 101 81.2
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 5.1e-40 169.5 226 41.6
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.1e-37 161.8 163 57.1
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 1.8e-37 161.0 255 37.3
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 2.9e-35 153.7 91 83.5
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 1.4e-29 134.8 117 62.4
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 2.4e-29 134.0 73 90.4
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 2.4e-29 134.0 73 90.4
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 2.4e-29 134.0 73 90.4
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 9.1e-29 132.1 101 66.3
Ah.10g029620 Amaranthus hybridus HOM05D004331 ORTHO05D004984 2.6e-28 130.6 79 81.0
MBI15_g10655_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 2.6e-28 130.6 141 54.6
AUR62030577 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.1e-26 125.2 116 56.9
Eucgr.G03162 Eucalyptus grandis HOM05D004331 ORTHO05D004984 5.5e-26 122.9 223 40.8
Zm00001eb123190 Zea mays HOM05D004331 ORTHO05D004984 4.8e-22 109.8 78 67.9
SHI31865 Sapria himalayana HOM05D004331 ORTHO05D004984 1.4e-21 108.2 82 61.0
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 3.1e-21 107.1 63 79.4
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 1.3e-19 101.7 253 29.6
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 2.2e-19 100.9 54 88.9
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 4.2e-18 96.7 56 75.0
C08p13890 Brassica napus HOM05D013285 ORTHO05D004984 3.7e-14 83.6 72 66.7
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 4.8e-14 83.2 44 93.2
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 6.3e-14 82.8 49 75.5
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 3.5e-12 77.0 71 59.2


User provided reference genes

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