Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 3.4e-82 308.5 186 100.0
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 4.5e-58 228.4 172 70.9
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 3.2e-56 222.2 174 68.4
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 9.4e-56 220.7 172 69.8
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 7.4e-53 211.1 172 66.9
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 4.8e-52 208.4 172 77.3
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 2.9e-49 199.1 175 64.6
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 8.5e-49 197.6 168 61.9
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 9.4e-48 194.1 178 73.6
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 1.6e-47 193.4 174 61.5
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 2.1e-47 193.0 168 61.9
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 2.7e-47 192.6 179 72.6
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 3.6e-47 192.2 167 74.9
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 3.6e-47 192.2 179 72.1
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 3.6e-47 192.2 179 72.1
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 8.0e-47 191.0 179 68.7
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 5.2e-46 188.3 171 73.7
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 1.5e-45 186.8 171 61.4
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 2.6e-45 186.0 178 61.2
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 3.3e-45 185.7 183 58.5
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 3.3e-45 185.7 178 63.5
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 5.7e-45 184.9 170 75.3
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 7.4e-45 184.5 182 58.2
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 7.4e-45 184.5 170 57.6
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 1.3e-44 183.7 166 62.0
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 1.7e-44 183.3 168 57.7
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 2.8e-44 182.6 174 59.2
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 2.8e-44 182.6 172 58.7
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 3.7e-44 182.2 166 60.2
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 6.3e-44 181.4 168 57.1
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 1.8e-43 179.9 171 60.8
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 4.1e-43 178.7 168 69.6
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 4.1e-43 178.7 172 55.8
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 5.3e-43 178.3 186 61.3
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 7.0e-43 177.9 168 56.5
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 7.0e-43 177.9 172 57.0
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 7.0e-43 177.9 175 56.0
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 9.1e-43 177.6 165 60.0
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 1.6e-42 176.8 168 56.0
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 3.5e-42 175.6 172 55.2
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 4.5e-42 175.3 172 56.4
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 4.5e-42 175.3 172 55.8
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 7.7e-42 174.5 172 69.2
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.3e-41 173.7 173 67.1
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 2.9e-41 172.6 172 65.1
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 2.9e-41 172.6 168 54.2
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 3.8e-41 172.2 168 71.4
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 5.0e-41 171.8 172 66.3
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 8.5e-41 171.0 171 55.0
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 1.1e-40 170.6 185 54.1
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.5e-40 170.2 172 64.0
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 1.9e-40 169.9 177 57.1
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 1.9e-40 169.9 177 64.4
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 3.2e-40 169.1 171 60.2
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 4.2e-40 168.7 170 68.2
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.6e-39 166.8 176 55.1
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 2.7e-39 166.0 171 66.1
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 2.7e-39 166.0 172 54.1
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 4.7e-39 165.2 167 68.3
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 2.3e-38 162.9 168 64.3
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 2.3e-38 162.9 151 70.2
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 4.0e-38 162.2 182 64.8
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 4.0e-38 162.2 167 51.5
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 4.0e-38 162.2 163 63.8
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 5.2e-38 161.8 166 66.3
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 1.5e-37 160.2 171 52.0
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 2.0e-37 159.8 173 54.3
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 2.6e-37 159.5 166 52.4
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 2.6e-37 159.5 171 52.0
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 3.3e-37 159.1 171 53.8
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 5.7e-37 158.3 169 56.2
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 5.7e-37 158.3 166 65.1
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 7.5e-37 157.9 187 61.5
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 2.8e-36 156.0 162 66.0
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 4.8e-36 155.2 157 68.8
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 8.3e-36 154.5 168 52.4
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 8.3e-36 154.5 172 50.6
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 7.0e-35 151.4 164 66.5
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 9.1e-35 151.0 175 50.3
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 1.2e-34 150.6 172 49.4
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 1.2e-34 150.6 169 59.2
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 1.6e-34 150.2 168 50.0
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 3.5e-34 149.1 175 50.3
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 3.5e-34 149.1 172 48.8
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 3.5e-34 149.1 172 48.8
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 3.5e-34 149.1 175 50.3
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 4.5e-34 148.7 170 49.4
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 5.9e-34 148.3 172 49.4
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 7.7e-34 147.9 173 50.3
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 7.7e-34 147.9 173 61.8
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 7.7e-34 147.9 172 48.3
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.9e-33 146.0 239 41.0
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 1.1e-32 144.1 156 65.4
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 1.1e-32 144.1 133 72.9
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 1.9e-32 143.3 168 54.2
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 5.5e-32 141.7 178 48.3
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 5.5e-32 141.7 163 49.1
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 7.2e-32 141.4 170 47.1
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 1.2e-31 140.6 178 57.3
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 2.1e-31 139.8 169 47.9
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 2.7e-31 139.4 171 48.5
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 3.6e-31 139.0 116 62.9
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 2.3e-30 136.3 168 56.5
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 2.6e-29 132.9 104 67.3
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 3.4e-29 132.5 102 62.7
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 5.7e-29 131.7 149 51.7
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 9.8e-29 131.0 119 58.8
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 9.8e-29 131.0 167 55.1
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 2.8e-28 129.4 112 63.4
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 3.7e-28 129.0 168 45.8
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 6.3e-28 128.3 106 76.4
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 1.4e-27 127.1 165 44.2
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 4.1e-27 125.6 129 55.0
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 4.1e-27 125.6 181 51.4
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 4.1e-27 125.6 175 41.7
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.2e-26 124.0 172 57.6
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 2.7e-26 122.9 174 44.8
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 2.7e-26 122.9 114 56.1
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 5.9e-26 121.7 134 48.5
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 5.0e-25 118.6 114 56.1
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 2.5e-24 116.3 112 63.4
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 6.1e-23 111.7 106 71.7
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 1.4e-22 110.5 106 71.7
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 1.2e-21 107.5 187 41.7
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 5.7e-21 105.1 106 56.6
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 3.7e-20 102.4 106 50.9
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 2.9e-17 92.8 176 33.5
C01p26050 Brassica napus HOM05D004876 ORTHO05D005488 9.5e-16 87.8 97 51.5
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 9.5e-16 87.8 184 35.9
C03p81600 Brassica napus HOM05D004876 ORTHO05D005488 1.2e-15 87.4 103 48.5
BolC3t20430H Brassica oleracea HOM05D004876 ORTHO05D005488 1.2e-15 87.4 103 48.5
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 2.0e-13 80.1 80 55.0
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 6.4e-12 75.1 164 31.1
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 7.8e-10 68.2 76 51.3
Actinidia31636 Actinidia chinensis HOM05D004876 ORTHO05D005488 3.3e-08 62.8 87 43.7
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 1.6e-07 60.5 106 40.6
Nitab4.5_0001671g0020 Nicotiana tabacum HOM05D004876 ORTHO05D005488 2.1e-07 60.1 66 53.0
Oeu039385.1 Olea europaea HOM05D002276 ORTHO05D002381 3.1e-06 56.2 81 66.7
Zm00001eb290470 Zea mays HOM05D004876 ORTHO05D005488 5.2e-06 55.5 58 50.0


User provided reference genes

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