Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17355 Corylus avellana HOM05D006808 ORTHO05D008610 4.5e-92 341.3 175 100.0
Gohir.A05G403200 Gossypium hirsutum HOM05D006808 ORTHO05D008610 4.7e-73 278.1 208 73.1
Gohir.D04G012300 Gossypium hirsutum HOM05D006808 ORTHO05D008610 2.3e-72 275.8 208 72.1
Thecc.10G181400 Theobroma cacao HOM05D006808 ORTHO05D008610 2.6e-71 272.3 210 71.0
COL.COLO4_08324 Corchorus olitorius HOM05D006808 ORTHO05D008610 4.4e-71 271.6 210 70.5
Duzib128G2014 Durio zibethinus HOM05D006808 ORTHO05D008610 1.7e-70 269.6 208 71.6
Duzib114G0525 Durio zibethinus HOM05D006808 ORTHO05D008610 3.7e-70 268.5 210 70.0
Dinv34481 Davidia involucrata HOM05D006808 ORTHO05D008610 8.2e-70 267.3 211 70.1
Rhsim03G0152000 Rhododendron simsii HOM05D006808 ORTHO05D008610 1.8e-69 266.2 211 69.2
GSVIVG01032685001 Vitis vinifera HOM05D006808 ORTHO05D008610 4.1e-69 265.0 212 69.3
QL08p064804 Quercus lobata HOM05D006808 ORTHO05D008610 9.1e-69 263.8 203 71.4
CiPaw.02G198800 Carya illinoinensis HOM05D006808 ORTHO05D008610 2.0e-68 262.7 208 69.7
TAR623G0123 Trochodendron aralioides HOM05D006808 ORTHO05D008610 2.6e-68 262.3 210 69.5
PGR142G2065 Punica granatum HOM05D006808 ORTHO05D008610 1.0e-67 260.4 210 68.1
vmacro06890 Vaccinium macrocarpon HOM05D006808 ORTHO05D008610 1.3e-67 260.0 211 68.2
Aqoxy4G02407 Aquilegia oxysepala HOM05D006808 ORTHO05D008610 1.7e-67 259.6 208 67.8
Prupe.2G263900 Prunus persica HOM05D006808 ORTHO05D008610 3.8e-67 258.5 210 67.6
Actinidia13650 Actinidia chinensis HOM05D006808 ORTHO05D008610 8.5e-67 257.3 212 69.3
Potri.019G057800 Populus trichocarpa HOM05D006808 ORTHO05D008610 8.5e-67 257.3 211 68.7
Manes.07G140900 Manihot esculenta HOM05D006808 ORTHO05D008610 7.2e-66 254.2 210 66.7
FAN10G3082 Fragaria x ananassa HOM05D006808 ORTHO05D008610 2.1e-65 252.7 211 66.4
TWI73G0462 Tripterygium wilfordii HOM05D006808 ORTHO05D008610 2.1e-65 252.7 210 67.6
Atru.chr12.177 Acer truncatum HOM05D006808 ORTHO05D008610 2.7e-65 252.3 207 68.1
FvH4_7g25890 Fragaria vesca HOM05D006808 ORTHO05D008610 3.6e-65 251.9 211 65.9
FAN06G1576 Fragaria x ananassa HOM05D006808 ORTHO05D008610 3.6e-65 251.9 211 65.9
Cc02_g05390 Coffea canephora HOM05D006808 ORTHO05D008610 4.7e-65 251.5 212 67.0
FAN03G2408 Fragaria x ananassa HOM05D006808 ORTHO05D008610 6.1e-65 251.1 211 65.9
Lj8A55T83 Lonicera japonica HOM05D006808 ORTHO05D008610 3.0e-64 248.8 205 66.8
TWI53G1993 Tripterygium wilfordii HOM05D006808 ORTHO05D008610 3.0e-64 248.8 210 65.2
FAN01G2160 Fragaria x ananassa HOM05D006808 ORTHO05D008610 3.9e-64 248.4 211 65.4
Sabra19G0073500 Salix brachista HOM05D006808 ORTHO05D008610 5.2e-64 248.1 211 67.3
HanXRQChr08g0221541 Helianthus annuus HOM05D006808 ORTHO05D008610 5.7e-63 244.6 209 65.6
Nn5g26853 Nelumbo nucifera HOM05D006808 ORTHO05D008610 7.4e-63 244.2 211 65.4
CANSAT56G2327 Cannabis sativa HOM05D006808 ORTHO05D008610 2.2e-62 242.7 210 64.3
Cpa.g.sc19.60 Carica papaya HOM05D006808 ORTHO05D008610 6.3e-62 241.1 208 63.9
MBI03_g08370_MAGBIO Magnolia biondii HOM05D006808 ORTHO05D008610 1.4e-61 240.0 199 67.3
MD01G1167300 Malus domestica HOM05D006808 ORTHO05D008610 5.3e-61 238.0 191 69.1
ECA233G3418 Erigeron canadensis HOM05D006808 ORTHO05D008610 1.2e-60 236.9 207 64.3
Oeu044164.1 Olea europaea HOM05D006808 ORTHO05D008610 1.2e-60 236.9 204 65.2
SalBow3G3573 Salvia bowleyana HOM05D006808 ORTHO05D008610 3.5e-60 235.3 208 62.5
Nn2g10310 Nelumbo nucifera HOM05D006808 ORTHO05D008610 5.9e-60 234.6 218 62.4
Lsat_1_v5_gn_8_11480 Lactuca sativa HOM05D006808 ORTHO05D008610 7.7e-60 234.2 211 63.5
MSTRG.172 Avicennia marina HOM05D006808 ORTHO05D008610 3.8e-59 231.9 205 62.4
CAN.G203.51 Capsicum annuum HOM05D006808 ORTHO05D008610 3.8e-59 231.9 211 62.1
ClCG07G005100 Citrullus lanatus HOM05D006808 ORTHO05D008610 3.8e-59 231.9 210 61.9
Ca_29954_v3 Cicer arietinum L. HOM05D006808 ORTHO05D008610 3.2e-58 228.8 210 60.0
Medtr3g093980 Medicago truncatula HOM05D006808 ORTHO05D008610 4.2e-58 228.4 210 59.5
MELO3C020146.2 Cucumis melo HOM05D006808 ORTHO05D008610 5.5e-58 228.0 210 60.0
CsaV3_5G010920 Cucumis sativus L. HOM05D006808 ORTHO05D008610 5.5e-58 228.0 210 61.0
Solyc05g052240.3 Solanum lycopersicum HOM05D006808 ORTHO05D008610 5.5e-58 228.0 206 62.6
Sopen05g030780 Solanum pennellii HOM05D006808 ORTHO05D008610 1.2e-57 226.9 205 62.4
Psat5g069280 Pisum sativum HOM05D006808 ORTHO05D008610 4.7e-57 224.9 210 59.5
Phvul.009G143100 Phaseolus vulgaris HOM05D006808 ORTHO05D008610 6.1e-57 224.6 210 58.6
TPR.G16134 Trifolium pratense HOM05D006808 ORTHO05D008610 3.0e-56 222.2 208 58.2
ATR1127G203 Amborella trichopoda HOM05D006808 ORTHO05D008610 4.0e-56 221.9 210 59.0
VMungo1309G1960 Vigna mungo HOM05D006808 ORTHO05D008610 5.7e-55 218.0 210 57.6
Sp6g37560 Schrenkiella parvula HOM05D006808 ORTHO05D008610 1.3e-54 216.9 209 59.8
Sc11g0005840 Simmondsia chinensis HOM05D006808 ORTHO05D008610 1.3e-54 216.9 204 59.8
MD07G1233400 Malus domestica HOM05D006808 ORTHO05D008610 1.7e-54 216.5 193 64.2
Thhalv10014675m.g Eutrema salsugineum HOM05D006808 ORTHO05D008610 2.8e-54 215.7 209 59.3
AT5G05270 Arabidopsis thaliana HOM05D006808 ORTHO05D008610 3.7e-54 215.3 209 57.9
Lj1g0023491 Lotus japonicus HOM05D006808 ORTHO05D008610 4.8e-54 214.9 210 57.1
arahy.Tifrunner.gnm1.ann1.WYW97W Arachis hypogaea HOM05D006808 ORTHO05D008610 6.3e-54 214.5 210 57.1
Carub.0006s0420 Capsella rubella HOM05D006808 ORTHO05D008610 6.3e-54 214.5 209 58.9
DCAR_019805 Daucus carota HOM05D006808 ORTHO05D008610 8.3e-54 214.2 213 58.2
A10p30920 Brassica napus HOM05D006808 ORTHO05D008610 1.1e-53 213.8 205 59.5
BraA10t45137Z Brassica rapa HOM05D006808 ORTHO05D008610 1.1e-53 213.8 205 59.5
CDE07G0319 Ceratophyllum demersum HOM05D006808 ORTHO05D008610 1.4e-53 213.4 212 56.1
Glyma.04G222400 Glycine max HOM05D006808 ORTHO05D008610 1.4e-53 213.4 210 57.1
Aa31LG11G6120 Aethionema arabicum HOM05D006808 ORTHO05D008610 3.1e-53 212.2 209 57.4
arahy.Tifrunner.gnm1.ann1.SNS0I7 Arachis hypogaea HOM05D006808 ORTHO05D008610 5.4e-53 211.5 210 56.7
C09p71430 Brassica napus HOM05D006808 ORTHO05D008610 7.0e-53 211.1 205 58.5
BolC9t59906H Brassica oleracea HOM05D006808 ORTHO05D008610 7.0e-53 211.1 205 58.5
AL6G15110 Arabidopsis lyrata HOM05D006808 ORTHO05D008610 2.7e-52 209.1 205 57.6
EL10Ac2g02642 Beta vulgaris HOM05D006808 ORTHO05D008610 5.9e-52 208.0 204 56.9
CDE06G0937 Ceratophyllum demersum HOM05D006808 ORTHO05D008610 7.7e-52 207.6 212 55.2
SGA_v2.0_scaffold384G50428 Striga asiatica HOM05D006808 ORTHO05D008610 8.5e-51 204.1 212 55.7
CARHR207960 Cardamine hirsuta HOM05D006808 ORTHO05D008610 5.5e-50 201.4 209 55.0
Hund15819 Selenicereus undatus HOM05D006808 ORTHO05D008610 5.5e-50 201.4 204 56.4
PSO170G3172 Papaver somniferum HOM05D006808 ORTHO05D008610 9.4e-50 200.7 214 53.7
PSO017G4017 Papaver somniferum HOM05D006808 ORTHO05D008610 2.7e-49 199.1 210 53.8
PSO017G4891 Papaver somniferum HOM05D006808 ORTHO05D008610 2.7e-49 199.1 210 53.8
PSO017G6829 Papaver somniferum HOM05D006808 ORTHO05D008610 2.7e-49 199.1 210 53.8
Os12g0115700 Oryza sativa ssp. japonica HOM05D006808 ORTHO05D008610 1.3e-46 190.3 211 53.1
Os11g0116300 Oryza sativa ssp. japonica HOM05D006808 ORTHO05D008610 8.3e-46 187.6 211 52.6
HPP92_015591 Vanilla planifolia HOM05D006808 ORTHO05D008610 1.6e-44 183.3 204 50.0
Lalb_Chr23g0272211 Lupinus albus HOM05D006808 ORTHO05D008610 3.3e-42 175.6 188 54.8
Nitab4.5_0000375g0270 Nicotiana tabacum HOM05D006808 ORTHO05D008610 3.3e-42 175.6 186 57.5
Lsat_1_v5_gn_6_40701 Lactuca sativa HOM05D006808 ORTHO05D008610 1.2e-41 173.7 208 48.1
Zm00001eb163860 Zea mays HOM05D006808 ORTHO05D008610 2.6e-39 166.0 220 47.7
Glyma.06G143000 Glycine max HOM05D006808 ORTHO05D008610 3.4e-39 165.6 178 53.4
Nitab4.5_0002279g0030 Nicotiana tabacum HOM05D006808 ORTHO05D008610 3.2e-37 159.1 179 54.7
Ca_16867_v3 Cicer arietinum L. HOM05D006808 ORTHO05D008610 4.1e-37 158.7 165 55.8
SHI28909 Sapria himalayana HOM05D006808 ORTHO05D008610 4.1e-37 158.7 181 52.5
unitig_736.g22963 Utricularia gibba HOM05D001179 ORTHO05D003685 4.6e-28 128.6 167 44.9
Lalb_Chr08g0239161 Lupinus albus HOM05D006808 ORTHO05D008610 3.9e-27 125.6 120 62.5
Pp3c4_25770 Physcomitrium patens HOM05D006808 ORTHO05D008610 1.4e-24 117.1 215 37.2
CSS0015529 Camellia sinensis var. sinensis HOM05D006808 ORTHO05D008610 4.4e-23 112.1 80 75.0
Sed0011882 Sechium edule HOM05D006808 ORTHO05D008610 5.8e-23 111.7 80 65.0
Pp3c26_4040 Physcomitrium patens HOM05D006808 ORTHO05D008610 3.7e-22 109.0 210 35.7
MD00G1021400 Malus domestica HOM05D006808 ORTHO05D008610 6.4e-22 108.2 115 60.9
Sed0020146 Sechium edule HOM05D006808 ORTHO05D008610 5.4e-21 105.1 100 59.0
Mapoly0175s0004 Marchantia polymorpha HOM05D006808 ORTHO05D008610 2.7e-20 102.8 205 35.6
Ah.12g064370 Amaranthus hybridus HOM05D006808 ORTHO05D008610 1.3e-19 100.5 119 50.4
AagrBONN_evm.TU.Sc2ySwM_117.3318 Anthoceros agrestis HOM05D006808 ORTHO05D008610 2.5e-18 96.3 126 42.1
SMO358G0139 Selaginella moellendorffii HOM05D006808 ORTHO05D008610 1.8e-16 90.1 191 36.1
AagrBONN_evm.TU.Sc2ySwM_344.5062 Anthoceros agrestis HOM05D006808 ORTHO05D008610 4.1e-13 79.0 131 35.9
AagrBONN_evm.TU.Sc2ySwM_369.401 Anthoceros agrestis HOM05D006808 ORTHO05D008610 4.1e-13 79.0 114 36.8
AagrBONN_evm.TU.Sc2ySwM_117.3383 Anthoceros agrestis HOM05D006808 ORTHO05D008610 2.1e-12 76.6 115 37.4
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 2.1e-12 76.6 114 34.2
AagrBONN_evm.TU.Sc2ySwM_228.5586 Anthoceros agrestis HOM05D006808 ORTHO05D008610 3.5e-12 75.9 129 34.1
AagrBONN_evm.TU.Sc2ySwM_369.397 Anthoceros agrestis HOM05D006808 ORTHO05D008769 4.6e-12 75.5 114 36.8
AagrBONN_evm.TU.Sc2ySwM_117.3130 Anthoceros agrestis HOM05D006808 ORTHO05D008610 1.7e-11 73.6 125 34.4
AagrBONN_evm.TU.Sc2ySwM_228.3568 Anthoceros agrestis HOM05D007153 ORTHO05D008769 5.6e-10 68.6 135 32.6
AagrBONN_evm.TU.Sc2ySwM_369.402 Anthoceros agrestis HOM05D006808 ORTHO05D008610 2.8e-09 66.2 105 34.3
AagrBONN_evm.TU.Sc2ySwM_117.3242 Anthoceros agrestis HOM05D006808 ORTHO05D008610 1.8e-08 63.5 129 32.6
ATR0759G123 Amborella trichopoda HOM05D003362 ORTHO05D003783 8.9e-08 61.2 206 28.6
SGA_v2.0_scaffold2G01424 Striga asiatica HOM05D003362 ORTHO05D003783 2.0e-07 60.1 135 35.6
Sc06g0001890 Simmondsia chinensis HOM05D003362 ORTHO05D003783 5.8e-07 58.5 147 32.7
BcaB05g22784 Brassica carinata HOM05D003362 ORTHO05D003783 7.6e-07 58.2 81 39.5
Migut.D00159 Erythranthe guttata HOM05D003362 ORTHO05D003783 7.6e-07 58.2 209 30.1
PSO339G0073 Papaver somniferum HOM05D003362 ORTHO05D003783 7.6e-07 58.2 135 31.9
PSO384G0434 Papaver somniferum HOM05D003362 ORTHO05D003783 7.6e-07 58.2 135 31.9
CSS0050436 Camellia sinensis var. sinensis HOM05D003362 ORTHO05D003783 1.3e-06 57.4 141 33.3
CSS0034202 Camellia sinensis var. sinensis HOM05D003362 ORTHO05D003783 2.9e-06 56.2 85 40.0
Dinv31395 Davidia involucrata HOM05D003362 ORTHO05D003783 2.9e-06 56.2 141 33.3
PGR044G1755 Punica granatum HOM05D003362 ORTHO05D003783 2.9e-06 56.2 129 30.2
Thecc.10G060600 Theobroma cacao HOM05D003362 ORTHO05D003783 2.9e-06 56.2 135 32.6
Actinidia38221 Actinidia chinensis HOM05D003362 ORTHO05D003783 3.8e-06 55.8 135 34.8
MELO3C025484.2 Cucumis melo HOM05D003362 ORTHO05D003783 3.8e-06 55.8 212 28.3
DCAR_027694 Daucus carota HOM05D003362 ORTHO05D003783 3.8e-06 55.8 180 30.6
Actinidia02995 Actinidia chinensis HOM05D003362 ORTHO05D003783 4.9e-06 55.5 79 43.0
Hund19984 Selenicereus undatus HOM05D003362 ORTHO05D003783 4.9e-06 55.5 208 29.3
GSVIVG01032619001 Vitis vinifera HOM05D003362 ORTHO05D003783 4.9e-06 55.5 79 41.8
Hma1.2p1_0629F.1_g192100 Hydrangea macrophylla HOM05D003362 ORTHO05D003783 6.4e-06 55.1 135 34.1


User provided reference genes

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