Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 0.0e+00 1236.1 618 100.0
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 5.0e-279 964.1 528 92.8
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 2.1e-277 958.7 619 77.5
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 2.5e-270 935.3 626 76.5
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 2.8e-245 852.0 621 69.6
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 8.3e-242 840.5 622 68.6
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 2.4e-241 839.0 622 69.3
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 1.3e-239 833.2 625 67.4
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 8.6e-239 830.5 620 68.9
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 1.5e-238 829.7 624 68.3
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 2.8e-237 825.5 624 68.4
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 8.0e-237 823.9 622 67.0
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 3.1e-236 822.0 622 67.8
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 3.1e-236 822.0 655 64.9
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 5.8e-235 817.8 621 67.8
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 7.5e-235 817.4 623 68.2
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 2.2e-234 815.8 623 66.9
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 1.4e-233 813.1 623 66.5
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 1.4e-233 813.1 622 67.5
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 1.7e-231 806.2 626 65.5
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 3.9e-231 805.1 621 66.8
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 1.5e-230 803.1 626 65.2
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 1.9e-230 802.7 622 65.3
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 3.3e-230 802.0 626 65.0
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 4.3e-230 801.6 621 66.5
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 6.8e-228 794.3 622 65.6
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 2.0e-227 792.7 621 65.9
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 2.6e-227 792.3 696 60.1
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 7.5e-227 790.8 621 63.9
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 9.9e-227 790.4 621 65.7
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 5.4e-225 784.6 627 64.9
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 1.2e-224 783.5 619 64.3
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 1.6e-224 783.1 622 64.3
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 2.1e-224 782.7 622 65.9
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 2.1e-224 782.7 642 62.8
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 3.5e-224 781.9 622 64.5
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 1.9e-222 776.2 619 65.4
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 1.9e-222 776.2 626 64.5
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 3.3e-222 775.4 623 65.5
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 3.3e-222 775.4 623 63.7
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 4.3e-222 775.0 622 63.7
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 9.5e-222 773.9 621 64.3
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.6e-221 773.1 622 63.8
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 1.8e-220 769.6 622 63.7
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 1.2e-219 766.9 622 62.9
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 1.5e-219 766.5 668 59.7
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 2.6e-219 765.8 620 62.7
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 5.8e-219 764.6 623 62.6
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 1.3e-218 763.5 628 63.2
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 3.8e-218 761.9 620 63.4
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 5.4e-217 758.1 622 63.0
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.7e-215 753.1 622 63.0
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 8.7e-215 750.7 623 60.7
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 1.9e-214 749.6 622 62.2
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 3.3e-214 748.8 622 61.3
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 1.2e-213 746.9 619 61.6
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 3.1e-212 742.3 622 60.9
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 4.0e-212 741.9 622 61.6
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 6.9e-212 741.1 628 62.3
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 2.0e-211 739.6 621 61.4
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 2.6e-211 739.2 636 59.7
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 1.7e-210 736.5 622 60.6
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 2.2e-210 736.1 622 60.8
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 2.9e-210 735.7 621 61.4
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 4.2e-209 731.9 621 60.1
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 2.7e-208 729.2 640 59.5
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 1.3e-207 726.9 622 60.9
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 1.7e-207 726.5 622 60.0
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 2.5e-206 722.6 621 59.4
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 4.8e-205 718.4 629 58.2
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 1.4e-204 716.8 624 61.2
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 2.4e-204 716.1 629 57.7
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 5.3e-204 714.9 657 56.5
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 6.9e-204 714.5 622 59.6
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 6.9e-204 714.5 620 60.0
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 3.2e-201 705.7 624 59.0
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 7.1e-201 704.5 623 59.1
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 1.2e-200 703.7 625 59.0
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 1.2e-200 703.7 586 61.6
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 2.1e-200 703.0 629 58.5
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 2.1e-200 703.0 625 59.5
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 6.0e-200 701.4 621 58.9
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 7.9e-200 701.0 624 58.3
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 1.3e-199 700.3 625 59.2
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 1.3e-199 700.3 621 58.8
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 1.8e-199 699.9 623 57.9
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 3.0e-199 699.1 622 59.3
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 3.0e-199 699.1 562 64.2
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 3.7e-197 692.2 624 58.2
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 3.7e-197 692.2 624 58.2
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 4.8e-197 691.8 623 57.9
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 1.1e-196 690.6 625 57.9
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 1.4e-196 690.3 585 60.9
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 2.4e-196 689.5 580 61.9
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 7.9e-192 674.5 622 57.2
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 7.4e-190 667.9 622 56.9
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.4e-188 663.7 604 57.9
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 2.8e-173 612.8 471 66.5
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 8.2e-173 611.3 622 52.4
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 1.8e-172 610.1 552 58.5
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 1.5e-171 607.1 552 58.3
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 4.5e-171 605.5 632 51.4
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 1.4e-169 600.5 492 64.2
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 7.4e-166 588.2 647 49.6
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 7.4e-166 588.2 632 50.6
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 1.8e-164 583.6 628 51.3
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 4.5e-163 578.9 445 67.6
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 5.7e-158 562.0 548 55.1
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 2.4e-156 556.6 576 53.5
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 1.0e-154 551.2 621 48.3
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 4.1e-148 529.3 624 45.5
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 1.9e-129 467.2 398 59.8
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 2.6e-126 456.8 635 41.7
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.8e-120 436.8 280 79.3
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 1.7e-117 427.6 600 42.2
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 1.1e-108 398.3 637 36.7
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 1.4e-108 397.9 632 38.1
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 7.8e-107 392.1 411 55.5
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 3.0e-106 390.2 331 59.8
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 1.6e-99 367.9 627 37.2
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 3.0e-98 363.6 268 69.4
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 1.4e-95 354.8 650 36.6
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 5.3e-95 352.8 249 68.7
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 1.5e-86 324.7 491 42.0
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 4.5e-78 296.6 632 32.1
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 2.1e-72 277.7 411 43.6
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 5.3e-71 273.1 250 56.4
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 3.2e-60 237.3 307 44.3
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 1.4e-58 231.9 167 70.1
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 2.2e-56 224.6 287 47.4
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 3.3e-49 200.7 133 71.4
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 2.2e-48 198.0 585 28.7
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 1.1e-47 195.7 309 38.8
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 6.1e-43 179.9 134 66.4
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 1.1e-41 175.6 414 32.9
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 1.5e-41 175.3 128 68.0
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 3.6e-35 154.1 132 56.8
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 1.0e-34 152.5 116 65.5
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 5.5e-28 130.2 891 22.6
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 6.3e-24 116.7 136 43.4
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 2.4e-23 114.8 176 38.1
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 4.5e-22 110.5 89 64.0
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 1.5e-20 105.5 95 56.8
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 2.4e-15 88.2 108 46.3
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 3.2e-15 87.8 117 41.0
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 3.2e-15 87.8 117 41.0
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 8.0e-11 73.2 42 73.8
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 8.0e-11 73.2 42 73.8
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 1.4e-10 72.4 105 38.1
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 4.0e-10 70.9 41 73.2
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 1.2e-09 69.3 41 73.2
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 3.4e-09 67.8 88 42.0
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 2.7e-06 58.2 57 50.9
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 6.0e-06 57.0 56 53.6


User provided reference genes

Program Settings