Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17307 Corylus avellana HOM05D028104 ORTHO05D043640 2.8e-28 127.9 63 100.0
Cfa001245 Carpinus fangiana HOM05D028104 ORTHO05D043640 5.3e-27 123.6 63 96.8
Haze_13094 Corylus avellana HOM05D000186 ORTHO05D002091 4.1e-19 97.4 50 94.0
CiPaw.04G122900 Carya illinoinensis HOM05D000186 ORTHO05D002091 1.9e-16 88.6 50 86.0
QL08p037441 Quercus lobata HOM05D000186 ORTHO05D002091 4.2e-16 87.4 50 82.0
CiPaw.03G170400 Carya illinoinensis HOM05D000186 ORTHO05D002091 2.3e-14 81.6 50 78.0
TPR.G12511 Trifolium pratense HOM05D000186 ORTHO05D002091 3.3e-13 77.8 50 70.0
Prupe.3G232100 Prunus persica HOM05D000186 ORTHO05D002091 7.4e-13 76.6 53 66.0
Ciclev10014869m.g Citrus clementina HOM05D000186 ORTHO05D002091 1.3e-12 75.9 50 72.0
TWI75G0948 Tripterygium wilfordii HOM05D000186 ORTHO05D002091 2.2e-12 75.1 50 72.0
Sabra19G0138100 Salix brachista HOM05D000186 ORTHO05D002091 4.8e-12 73.9 46 73.9
Potri.019G108900 Populus trichocarpa HOM05D000186 ORTHO05D002091 8.2e-12 73.2 45 75.6
MD09G1093100 Malus domestica HOM05D000186 ORTHO05D002091 1.1e-11 72.8 53 64.2
Duzib248G1245 Durio zibethinus HOM05D000186 ORTHO05D002091 1.4e-11 72.4 50 68.0
Duzib248G1664 Durio zibethinus HOM05D000186 ORTHO05D002091 1.4e-11 72.4 50 68.0
Manes.16G044600 Manihot esculenta HOM05D000186 ORTHO05D002091 1.4e-11 72.4 46 71.7
Sed0000637 Sechium edule HOM05D000186 ORTHO05D002091 1.4e-11 72.4 50 64.0
CANSAT64G1153 Cannabis sativa HOM05D000186 ORTHO05D002091 1.8e-11 72.0 51 68.6
Ca_02647_v3 Cicer arietinum L. HOM05D000186 ORTHO05D002091 3.1e-11 71.2 50 66.0
TWI18G1242 Tripterygium wilfordii HOM05D000186 ORTHO05D002091 3.1e-11 71.2 50 68.0
Duzib132G0554 Durio zibethinus HOM05D000186 ORTHO05D002091 4.1e-11 70.9 50 66.0
MD17G1083200 Malus domestica HOM05D000186 ORTHO05D002091 4.1e-11 70.9 53 60.4
Cpa.g.sc9.231 Carica papaya HOM05D000186 ORTHO05D002091 9.1e-11 69.7 50 66.0
CsaV3_7G021920 Cucumis sativus L. HOM05D000186 ORTHO05D002091 1.2e-10 69.3 51 62.7
RcHm_v2.0_Chr2g0161971 Rosa chinensis HOM05D000186 ORTHO05D002091 1.2e-10 69.3 54 63.0
Medtr2g015550 Medicago truncatula HOM05D000186 ORTHO05D002091 2.0e-10 68.6 50 60.0
Glyma.13G300700 Glycine max HOM05D000186 ORTHO05D002091 2.6e-10 68.2 50 60.0
TWI36G1523 Tripterygium wilfordii HOM05D000186 ORTHO05D002091 2.6e-10 68.2 50 64.0
ClCG02G017360 Citrullus lanatus HOM05D000186 ORTHO05D002091 3.4e-10 67.8 51 62.7
Lalb_Chr24g0399821 Lupinus albus HOM05D000186 ORTHO05D002091 3.4e-10 67.8 50 64.0
Sed0025066 Sechium edule HOM05D000186 ORTHO05D002091 3.4e-10 67.8 46 65.2
CARHR046090 Cardamine hirsuta HOM05D000186 ORTHO05D002091 5.9e-10 67.0 50 62.0
CARHR111490 Cardamine hirsuta HOM05D000186 ORTHO05D002091 5.9e-10 67.0 50 62.0
MELO3C013154.2 Cucumis melo HOM05D000186 ORTHO05D002091 5.9e-10 67.0 51 60.8
FvH4_6g44800 Fragaria vesca HOM05D000186 ORTHO05D002091 5.9e-10 67.0 54 59.3
FAN14G3567 Fragaria x ananassa HOM05D000186 ORTHO05D002091 5.9e-10 67.0 54 59.3
Glyma.12G201500 Glycine max HOM05D000186 ORTHO05D002091 5.9e-10 67.0 50 58.0
VMungo1080G1753 Vigna mungo HOM05D000186 ORTHO05D002091 5.9e-10 67.0 50 58.0
Lj3g0009333 Lotus japonicus HOM05D000186 ORTHO05D002091 7.7e-10 66.6 50 64.0
Potri.013G146200 Populus trichocarpa HOM05D000186 ORTHO05D002091 7.7e-10 66.6 46 71.7
Aa31LG8G17680 Aethionema arabicum HOM05D000186 ORTHO05D002091 1.0e-09 66.2 50 60.0
FAN02G1873 Fragaria x ananassa HOM05D000186 ORTHO05D002091 1.0e-09 66.2 52 59.6
Thhalv10001954m.g Eutrema salsugineum HOM05D000186 ORTHO05D002091 1.3e-09 65.9 50 60.0
FAN09G3348 Fragaria x ananassa HOM05D000186 ORTHO05D002091 1.7e-09 65.5 47 66.0
Phvul.005G107500 Phaseolus vulgaris HOM05D000186 ORTHO05D002091 1.7e-09 65.5 50 56.0
Sabra13G0118000 Salix brachista HOM05D000186 ORTHO05D002091 2.2e-09 65.1 46 69.6
FAN05G5002 Fragaria x ananassa HOM05D000186 ORTHO05D002091 2.9e-09 64.7 52 57.7
Psat1g062800 Pisum sativum HOM05D000186 ORTHO05D002091 5.0e-09 63.9 50 60.0
AT2G20810 Arabidopsis thaliana HOM05D000186 ORTHO05D002091 6.5e-09 63.5 51 62.7
BcaB03g16330 Brassica carinata HOM05D000186 ORTHO05D002091 8.5e-09 63.2 50 62.0
Lalb_Chr22g0356371 Lupinus albus HOM05D000186 ORTHO05D002091 8.5e-09 63.2 50 56.0
A07p04970 Brassica napus HOM05D000186 ORTHO05D002091 1.1e-08 62.8 50 60.0
BraA07t28290Z Brassica rapa HOM05D000186 ORTHO05D002091 1.1e-08 62.8 50 60.0
AL3G53920 Arabidopsis lyrata HOM05D000186 ORTHO05D002091 3.2e-08 61.2 49 59.2
Gohir.D04G145300 Gossypium hirsutum HOM05D000186 ORTHO05D002091 4.2e-08 60.8 50 56.0
Gorai.012G131400 Gossypium raimondii HOM05D000186 ORTHO05D002091 4.2e-08 60.8 50 56.0
Lalb_Chr14g0366651 Lupinus albus HOM05D000186 ORTHO05D002091 4.2e-08 60.8 50 52.0
Carub.0003s3538 Capsella rubella HOM05D000186 ORTHO05D002091 5.5e-08 60.5 50 56.0
THA.LOC104825522 Tarenaya hassleriana HOM05D000186 ORTHO05D002091 5.5e-08 60.5 50 62.0
BcaC06g36088 Brassica carinata HOM05D000186 ORTHO05D002091 9.4e-08 59.7 50 58.0
C07p07980 Brassica napus HOM05D000186 ORTHO05D002091 9.4e-08 59.7 50 58.0
BolC7t41215H Brassica oleracea HOM05D000186 ORTHO05D002091 9.4e-08 59.7 50 58.0
Gohir.A04G105500 Gossypium hirsutum HOM05D000186 ORTHO05D002091 1.6e-07 58.9 50 54.0
Nn1g09366 Nelumbo nucifera HOM05D000186 ORTHO05D002091 1.6e-07 58.9 48 58.3
Medtr2g006790 Medicago truncatula HOM05D000186 ORTHO05D002091 2.1e-07 58.5 51 56.9
CSS0034579 Camellia sinensis var. sinensis HOM05D000186 ORTHO05D002091 3.6e-07 57.8 50 58.0
CSS0034827 Camellia sinensis var. sinensis HOM05D000186 ORTHO05D002091 3.6e-07 57.8 50 58.0
TAR629G1653 Trochodendron aralioides HOM05D000186 ORTHO05D002091 4.6e-07 57.4 46 58.7
GSVIVG01030583001 Vitis vinifera HOM05D000186 ORTHO05D002091 7.9e-07 56.6 50 58.0
Lj8A116G74 Lonicera japonica HOM05D000186 ORTHO05D002091 1.0e-06 56.2 50 56.0
Lj2g0016805 Lotus japonicus HOM05D000186 ORTHO05D002091 1.0e-06 56.2 50 46.0
Nn4g26660 Nelumbo nucifera HOM05D000186 ORTHO05D002091 1.4e-06 55.8 48 52.1
Dinv15479 Davidia involucrata HOM05D000186 ORTHO05D002091 2.3e-06 55.1 50 54.0
QL06p042505 Quercus lobata HOM05D028104 ORTHO05D337229 2.3e-06 55.1 50 56.0
TAR627G0067 Trochodendron aralioides HOM05D000186 ORTHO05D002091 3.0e-06 54.7 50 52.0
PGR042G0605 Punica granatum HOM05D000186 ORTHO05D002091 3.9e-06 54.3 45 53.3
Actinidia09899 Actinidia chinensis HOM05D000186 ORTHO05D002091 6.7e-06 53.5 50 52.0
Actinidia12453 Actinidia chinensis HOM05D000186 ORTHO05D002091 6.7e-06 53.5 50 52.0


User provided reference genes

Program Settings