Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 0.0e+00 1502.3 727 100.0
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 0.0e+00 1466.8 727 98.1
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 5.6e-298 1027.3 707 71.9
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.9e-293 1012.3 709 71.7
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 2.6e-287 991.9 687 72.1
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 4.8e-281 971.1 737 66.6
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 3.2e-277 958.4 727 66.0
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 9.4e-277 956.8 713 66.6
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 3.1e-272 941.8 723 65.3
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 7.7e-271 937.2 715 65.9
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 1.0e-270 936.8 745 63.9
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.2e-265 919.1 689 65.6
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 7.7e-263 910.6 710 65.6
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 1.0e-262 910.2 675 65.5
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.1e-261 906.7 726 61.8
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 4.2e-261 904.8 721 63.0
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 3.9e-259 898.3 715 63.1
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 1.1e-258 896.7 731 62.4
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 1.5e-258 896.3 709 63.3
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 5.7e-258 894.4 678 64.9
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 9.7e-258 893.6 721 62.6
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 1.3e-257 893.3 717 63.2
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 8.2e-257 890.6 734 61.3
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.0e-254 883.6 736 61.5
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 2.2e-254 882.5 723 61.7
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 6.5e-254 880.9 705 64.0
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 6.5e-254 880.9 680 62.8
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 8.5e-254 880.6 705 63.8
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.5e-253 879.8 744 60.9
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 5.5e-253 877.9 707 63.5
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 7.2e-253 877.5 710 62.7
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 7.2e-253 877.5 723 62.0
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 2.1e-252 875.9 667 64.5
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.2e-250 870.2 761 59.3
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 4.4e-250 868.2 706 62.9
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 3.7e-249 865.1 673 64.0
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 4.8e-249 864.8 774 57.5
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 5.3e-248 861.3 726 58.7
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 1.2e-247 860.1 729 59.8
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.6e-247 859.8 679 61.1
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 2.0e-247 859.4 710 61.0
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 2.7e-247 859.0 676 63.9
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.7e-246 856.3 678 63.3
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.9e-246 855.5 678 63.4
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 2.5e-245 852.4 704 59.1
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 3.2e-245 852.0 705 60.3
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 5.5e-245 851.3 674 63.1
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 9.4e-245 850.5 705 60.0
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 1.6e-244 849.7 726 59.0
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 4.7e-244 848.2 683 61.1
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 2.3e-243 845.9 720 59.2
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.2e-242 843.6 699 60.2
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 2.0e-242 842.8 683 61.2
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 7.5e-242 840.9 668 63.0
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 2.2e-241 839.3 678 62.2
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 4.5e-239 831.6 670 62.1
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 3.8e-238 828.6 723 57.5
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 5.0e-238 828.2 684 59.4
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 5.0e-238 828.2 684 59.2
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 2.5e-237 825.9 731 58.0
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 1.2e-236 823.5 694 59.8
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 2.1e-236 822.8 718 57.5
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 5.2e-235 818.1 607 65.6
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 5.7e-234 814.7 735 56.6
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.4e-232 810.1 625 63.8
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.6e-231 806.6 692 57.4
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 2.7e-231 805.8 725 56.6
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 6.6e-230 801.2 893 50.2
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 3.3e-229 798.9 686 58.2
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 7.3e-229 797.7 736 56.8
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 9.5e-229 797.3 674 58.8
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.3e-227 792.7 772 54.5
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 4.0e-227 792.0 689 57.0
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 6.8e-227 791.2 721 55.1
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.2e-226 790.4 650 60.2
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 2.6e-226 789.3 614 63.4
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 3.7e-225 785.4 671 59.5
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 1.1e-224 783.9 692 56.4
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 1.1e-224 783.9 706 57.1
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 3.2e-224 782.3 680 57.6
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 4.1e-224 781.9 678 58.0
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 5.4e-224 781.6 682 57.3
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 1.6e-223 780.0 655 60.3
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 5.6e-221 771.5 592 64.7
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 1.4e-219 766.9 714 53.2
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 8.9e-219 764.2 665 58.9
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 5.4e-216 755.0 674 54.6
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 7.0e-216 754.6 734 54.2
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 1.6e-215 753.4 688 53.9
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 3.5e-215 752.3 683 54.0
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 7.8e-215 751.1 687 55.5
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.0e-214 750.7 674 54.6
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 6.6e-214 748.0 671 54.7
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.1e-213 747.3 690 55.5
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.5e-213 746.9 742 52.3
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 1.9e-213 746.5 671 54.1
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 1.9e-213 746.5 669 55.2
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 2.1e-212 743.0 671 54.4
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 2.1e-212 743.0 671 54.4
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 1.1e-211 740.7 671 54.1
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 4.0e-211 738.8 670 53.4
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 2.2e-209 733.0 589 62.0
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 2.2e-209 733.0 672 53.7
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 2.9e-209 732.6 722 52.4
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 6.0e-207 724.9 713 51.8
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 1.9e-205 719.9 649 58.2
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 2.8e-204 716.1 669 55.2
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 3.6e-204 715.7 674 52.8
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 6.2e-204 714.9 677 52.3
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.4e-203 713.8 714 50.8
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 9.9e-202 707.6 733 49.1
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.3e-201 707.2 677 51.7
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 1.7e-201 706.8 649 57.6
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 2.4e-200 703.0 675 51.1
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 9.2e-200 701.0 716 51.3
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 5.6e-197 691.8 678 54.7
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 5.6e-197 691.8 676 51.2
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.1e-195 687.6 679 52.6
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 1.4e-195 687.2 731 49.7
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 2.4e-195 686.4 531 64.0
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 6.6e-190 668.3 672 51.9
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.5e-189 667.2 679 50.1
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 1.1e-187 661.0 775 45.5
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 9.9e-186 654.4 638 52.2
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 6.7e-182 641.7 691 51.8
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 1.1e-181 641.0 711 48.2
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 1.1e-181 641.0 652 50.3
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 1.8e-174 617.1 556 57.4
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.1e-171 607.8 677 46.8
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 7.1e-168 595.1 679 48.9
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 3.7e-164 582.8 525 55.8
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 2.5e-136 490.3 543 48.3
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 8.8e-134 481.9 332 66.3
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 6.1e-119 432.6 431 50.1
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 1.4e-110 404.8 388 52.3
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 1.9e-107 394.4 231 78.8
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 8.6e-105 385.6 297 59.9
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 7.8e-98 362.5 391 51.2
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 1.2e-93 348.6 298 53.7
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 1.3e-89 335.1 395 46.3
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 1.5e-85 321.6 549 33.3
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 2.9e-84 317.4 452 40.5
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 1.0e-81 308.9 287 50.5
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 3.2e-75 287.3 537 33.5
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 6.0e-74 283.1 312 49.0
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 9.6e-72 275.8 578 32.2
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 1.0e-65 255.8 149 79.9
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 3.0e-57 227.6 219 53.0
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 5.7e-56 223.4 241 49.4
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 4.8e-55 220.3 199 56.3
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 1.2e-53 215.7 149 67.8
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 3.1e-46 191.0 226 44.7
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 5.3e-46 190.3 180 56.7
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.1e-43 182.6 127 64.6
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 2.5e-43 181.4 123 65.9
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 9.4e-43 179.5 211 47.4
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.1e-38 166.0 376 30.1
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 2.0e-37 161.8 99 72.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 2.0e-37 161.8 99 72.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 2.0e-37 161.8 99 72.7
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 2.0e-32 145.2 270 37.8
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 4.5e-29 134.0 244 36.1
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 4.0e-25 120.9 248 32.7
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 2.6e-24 118.2 230 37.8
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 3.8e-20 104.4 135 42.2
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 6.5e-20 103.6 203 36.9
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 8.5e-20 103.2 145 40.7
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 6.1e-18 97.1 76 65.8
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 6.8e-17 93.6 153 39.2
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 3.7e-15 87.8 59 64.4
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 7.2e-11 73.6 48 62.5
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 7.2e-11 73.6 48 62.5
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 9.4e-11 73.2 54 61.1


User provided reference genes

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