Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17279 Corylus avellana HOM05D000661 ORTHO05D000502 5.2e-204 714.1 355 100.0
Haze_17288 Corylus avellana HOM05D000661 ORTHO05D000502 8.2e-93 344.7 291 68.0
QL08p063903 Quercus lobata HOM05D000661 ORTHO05D000502 1.8e-39 167.5 213 47.9
Dinv21786 Davidia involucrata HOM05D000661 ORTHO05D000502 2.2e-37 160.6 357 37.0
vmacro09998 Vaccinium macrocarpon HOM05D000661 ORTHO05D000502 1.1e-31 141.7 288 35.1
Dinv10581 Davidia involucrata HOM05D000661 ORTHO05D000502 1.2e-30 138.3 345 34.5
Actinidia00657 Actinidia chinensis HOM05D000661 ORTHO05D000502 1.2e-27 128.3 342 32.7
Lj8C62T4 Lonicera japonica HOM05D000661 ORTHO05D000502 1.0e-26 125.2 342 33.0
Prupe.2G256900 Prunus persica HOM05D000661 ORTHO05D000502 1.3e-26 124.8 372 32.8
Cpa.g.sc19.121 Carica papaya HOM05D000661 ORTHO05D000502 5.1e-26 122.9 367 32.2
Manes.07G135300 Manihot esculenta HOM05D000661 ORTHO05D000502 1.1e-25 121.7 379 29.8
Rhsim09G0180500 Rhododendron simsii HOM05D000661 ORTHO05D000502 1.1e-25 121.7 298 35.2
GSVIVG01032746001 Vitis vinifera HOM05D000725 ORTHO05D004053 1.9e-25 120.9 297 33.0
Glyma.02G261700 Glycine max HOM05D000661 ORTHO05D000502 9.6e-25 118.6 375 31.2
TAR623G0672 Trochodendron aralioides HOM05D000661 ORTHO05D000502 2.1e-24 117.5 294 32.7
MD01G1158600 Malus domestica HOM05D000661 ORTHO05D000502 1.1e-23 115.2 378 31.0
Cc02_g05970 Coffea canephora HOM05D000661 ORTHO05D000502 2.4e-23 114.0 363 29.2
TAR633G0244 Trochodendron aralioides HOM05D000661 ORTHO05D000502 2.4e-23 114.0 331 29.9
Phvul.008G220400 Phaseolus vulgaris HOM05D000661 ORTHO05D000502 9.0e-23 112.1 363 33.3
Lalb_Chr04g0250401 Lupinus albus HOM05D000661 ORTHO05D000502 2.0e-22 110.9 363 30.9
Nitab4.5_0008890g0010 Nicotiana tabacum HOM05D000661 ORTHO05D000502 3.8e-21 106.7 345 29.9
Nitab4.5_0000058g0020 Nicotiana tabacum HOM05D000661 ORTHO05D000502 4.9e-21 106.3 346 30.6
arahy.Tifrunner.gnm1.ann1.5KI8FH Arachis hypogaea HOM05D000661 ORTHO05D000502 6.4e-21 105.9 382 30.1
Nn2g11006 Nelumbo nucifera HOM05D000661 ORTHO05D000502 1.4e-20 104.8 347 30.3
arahy.Tifrunner.gnm1.ann1.73DHZN Arachis hypogaea HOM05D000661 ORTHO05D000502 2.4e-20 104.0 382 28.5
TAR369G0269 Trochodendron aralioides HOM05D000661 ORTHO05D000502 2.4e-20 104.0 277 33.6
Glyma.14G056200 Glycine max HOM05D000661 ORTHO05D000502 4.2e-20 103.2 374 30.7
CSS0010594 Camellia sinensis var. sinensis HOM05D000661 ORTHO05D000502 5.4e-20 102.8 364 29.1
Nitab4.5_0001817g0020 Nicotiana tabacum HOM05D000661 ORTHO05D000502 3.5e-19 100.1 346 30.3
Nitab4.5_0000375g0030 Nicotiana tabacum HOM05D000661 ORTHO05D000502 1.3e-18 98.2 345 28.1
Sc11g0005390 Simmondsia chinensis HOM05D000661 ORTHO05D000502 2.3e-18 97.4 347 30.8
LjContig00357g0009568 Lotus japonicus HOM05D000661 ORTHO05D000502 5.1e-18 96.3 369 29.3
Cfa021533 Carpinus fangiana HOM05D053330 ORTHO05D123092 6.6e-18 95.9 194 37.6
Cfa021538 Carpinus fangiana HOM05D053330 ORTHO05D122131 6.6e-18 95.9 194 37.6
Oeu059719.1 Olea europaea HOM05D000661 ORTHO05D000502 6.6e-18 95.9 353 30.9
VMungo0647G1842 Vigna mungo HOM05D000661 ORTHO05D000502 3.3e-17 93.6 356 30.3
Sed0005384 Sechium edule HOM05D000661 ORTHO05D000502 7.3e-17 92.4 409 27.1
Ca_05998_v3 Cicer arietinum L. HOM05D000661 ORTHO05D000502 2.8e-16 90.5 375 28.3
Ca_06000_v3 Cicer arietinum L. HOM05D000661 ORTHO05D000502 2.8e-16 90.5 375 28.3
Oeu011116.1 Olea europaea HOM05D000661 ORTHO05D000502 2.8e-16 90.5 353 28.9
CDE06G0030 Ceratophyllum demersum HOM05D000661 ORTHO05D000502 1.1e-15 88.6 314 27.4
ClCG11G005990 Citrullus lanatus HOM05D000661 ORTHO05D000502 1.1e-15 88.6 399 27.1
Sc10g0002680 Simmondsia chinensis HOM05D000661 ORTHO05D000502 3.1e-15 87.0 341 28.4
CDE07G0832 Ceratophyllum demersum HOM05D000661 ORTHO05D000502 5.3e-15 86.3 259 28.6
Peaxi162Scf00284g00033 Petunia axillaris HOM05D000661 ORTHO05D000502 2.0e-14 84.3 345 27.2
Psat2g030560 Pisum sativum HOM05D000661 ORTHO05D000502 2.6e-14 84.0 375 27.7
CiPaw.05G028300 Carya illinoinensis HOM05D000661 ORTHO05D000502 9.9e-14 82.0 336 29.2
AUR62022952 Chenopodium quinoa HOM05D000661 ORTHO05D000502 9.9e-14 82.0 383 26.6
PGSC0003DMG401023951 Solanum tuberosum HOM05D000661 ORTHO05D000502 1.7e-13 81.3 325 27.7
PSO349G0181 Papaver somniferum HOM05D000661 ORTHO05D000502 2.2e-13 80.9 99 46.5
AUR62012312 Chenopodium quinoa HOM05D000661 ORTHO05D000502 2.9e-13 80.5 386 26.4
Oeu043171.1 Olea europaea HOM05D000661 ORTHO05D000502 3.8e-13 80.1 350 27.1
CSS0020944 Camellia sinensis var. sinensis HOM05D000661 ORTHO05D000502 6.4e-13 79.3 68 61.8
HPP92_012013 Vanilla planifolia HOM05D000661 ORTHO05D000502 6.4e-13 79.3 197 31.5
EL10Ac2g04902 Beta vulgaris HOM05D000661 ORTHO05D000502 8.4e-13 79.0 175 36.6
PSO765G0039 Papaver somniferum HOM05D000661 ORTHO05D000502 8.4e-13 79.0 99 47.5
Ciclev10032029m.g Citrus clementina HOM05D000661 ORTHO05D000502 1.4e-12 78.2 330 28.5
Hund13527 Selenicereus undatus HOM05D000661 ORTHO05D000502 2.4e-12 77.4 385 27.3
PGSC0003DMG400027117 Solanum tuberosum HOM05D000661 ORTHO05D000502 3.2e-12 77.0 402 24.9
CsaV3_6G002010 Cucumis sativus L. HOM05D000661 ORTHO05D000502 5.5e-12 76.3 415 26.3
CiPaw.06G159000 Carya illinoinensis HOM05D000661 ORTHO05D000502 9.3e-12 75.5 305 29.2
Actinidia00973 Actinidia chinensis HOM05D000661 ORTHO05D000502 1.2e-11 75.1 71 56.3
AL4G38170 Arabidopsis lyrata HOM05D000661 ORTHO05D000502 1.2e-11 75.1 344 25.3
Sed0001777 Sechium edule HOM05D000661 ORTHO05D000502 1.2e-11 75.1 102 43.1
MSTRG.27301 Avicennia marina HOM05D000661 ORTHO05D000502 1.6e-11 74.7 68 57.4
MELO3C008318.2 Cucumis melo HOM05D000661 ORTHO05D000502 2.1e-11 74.3 103 45.6
THA.LOC104810124 Tarenaya hassleriana HOM05D000661 ORTHO05D000502 2.7e-11 73.9 334 27.5
CAN.G203.8 Capsicum annuum HOM05D000661 ORTHO05D000502 6.0e-11 72.8 369 26.3
Solyc06g050520.3 Solanum lycopersicum HOM05D000661 ORTHO05D000502 1.0e-10 72.0 330 27.3
BcaC02g07375 Brassica carinata HOM05D000661 ORTHO05D000502 1.3e-10 71.6 303 27.1
Atru.chr12.109 Acer truncatum HOM05D000661 ORTHO05D000502 1.8e-10 71.2 373 25.5
TAR636G2631 Trochodendron aralioides HOM05D000661 ORTHO05D000502 1.8e-10 71.2 269 28.6
HanXRQChr09g0252771 Helianthus annuus HOM05D000661 ORTHO05D000502 3.0e-10 70.5 68 54.4
Phvul.005G111200 Phaseolus vulgaris HOM05D000661 ORTHO05D000502 3.9e-10 70.1 47 68.1
Haze_10255 Corylus avellana HOM05D000661 ORTHO05D000502 6.7e-10 69.3 49 65.3
Sopen06g016040 Solanum pennellii HOM05D000661 ORTHO05D000502 6.7e-10 69.3 70 57.1
Cfa004627 Carpinus fangiana HOM05D000661 ORTHO05D000502 8.7e-10 68.9 50 62.0
VMungo1080G0566 Vigna mungo HOM05D000661 ORTHO05D000502 8.7e-10 68.9 47 66.0
Haze_12991 Corylus avellana HOM05D000661 ORTHO05D000502 1.1e-09 68.6 99 44.4
TPR.G8351 Trifolium pratense HOM05D000661 ORTHO05D000502 1.9e-09 67.8 70 55.7
Migut.F00629 Erythranthe guttata HOM05D000661 ORTHO05D000502 2.5e-09 67.4 68 51.5
Peaxi162Scf01149g00023 Petunia axillaris HOM05D000661 ORTHO05D000502 2.5e-09 67.4 376 27.1
Cfa014478 Carpinus fangiana HOM05D000661 ORTHO05D000502 3.3e-09 67.0 47 63.8
Glyma.13G304300 Glycine max HOM05D000661 ORTHO05D000502 3.3e-09 67.0 47 68.1
Haze_10258 Corylus avellana HOM05D000661 ORTHO05D000502 4.3e-09 66.6 50 58.0
Glyma.12G197700 Glycine max HOM05D000661 ORTHO05D000502 4.3e-09 66.6 47 66.0
Medtr5g083340 Medicago truncatula HOM05D000661 ORTHO05D000502 4.3e-09 66.6 70 54.3
CiPaw.04G120000 Carya illinoinensis HOM05D000661 ORTHO05D000502 5.6e-09 66.2 47 61.7
Eucgr.G03094 Eucalyptus grandis HOM05D000661 ORTHO05D000502 5.6e-09 66.2 54 61.1
CiPaw.03G165300 Carya illinoinensis HOM05D000661 ORTHO05D000502 9.6e-09 65.5 47 63.8
Carub.0004s2259 Capsella rubella HOM05D000661 ORTHO05D000502 1.3e-08 65.1 195 28.7
TPR.G19058 Trifolium pratense HOM05D000661 ORTHO05D000502 1.3e-08 65.1 47 63.8
arahy.Tifrunner.gnm1.ann1.L5HMHT Arachis hypogaea HOM05D000661 ORTHO05D000502 1.6e-08 64.7 48 70.8
Lsat_1_v5_gn_9_60760 Lactuca sativa HOM05D000661 ORTHO05D000502 2.1e-08 64.3 62 51.6
Lj3g0017213 Lotus japonicus HOM05D000661 ORTHO05D000502 2.1e-08 64.3 48 62.5
Solyc05g052410.3 Solanum lycopersicum HOM05D000661 ORTHO05D000502 2.1e-08 64.3 385 23.9
SGA_v2.0_scaffold60G20959 Striga asiatica HOM05D000661 ORTHO05D000502 2.1e-08 64.3 49 61.2
A04p30730 Brassica napus HOM05D000661 ORTHO05D000502 3.7e-08 63.5 310 26.1
BraA04t18532Z Brassica rapa HOM05D000661 ORTHO05D000502 3.7e-08 63.5 310 26.1
Haze_04434 Corylus avellana HOM05D000661 ORTHO05D000502 3.7e-08 63.5 230 30.4
Lsat_1_v5_gn_5_22521 Lactuca sativa HOM05D000661 ORTHO05D000502 3.7e-08 63.5 49 61.2
Aa31LG5G19220 Aethionema arabicum HOM05D000661 ORTHO05D000502 8.1e-08 62.4 340 29.4
MSTRG.8921 Avicennia marina HOM05D000661 ORTHO05D000502 1.1e-07 62.0 84 45.2
Thhalv10016913m.g Eutrema salsugineum HOM05D000661 ORTHO05D000502 1.1e-07 62.0 201 31.8
QL08p034483 Quercus lobata HOM05D000661 ORTHO05D000502 1.1e-07 62.0 47 61.7
Sp4g22680 Schrenkiella parvula HOM05D000661 ORTHO05D000502 1.1e-07 62.0 351 23.6
Ca_01560_v3 Cicer arietinum L. HOM05D000661 ORTHO05D000502 1.4e-07 61.6 41 65.9
HanXRQChr15g0495971 Helianthus annuus HOM05D000661 ORTHO05D000502 1.4e-07 61.6 49 59.2
Oeu015353.1 Olea europaea HOM05D000661 ORTHO05D000502 1.8e-07 61.2 180 30.6
Prupe.3G223300 Prunus persica HOM05D000661 ORTHO05D000502 1.8e-07 61.2 47 63.8
HPP92_012006 Vanilla planifolia HOM05D000661 ORTHO05D000502 1.8e-07 61.2 309 25.6
FAN10G2578 Fragaria x ananassa HOM05D000661 ORTHO05D000502 3.1e-07 60.5 195 30.8
Glyma.12G103100 Glycine max HOM05D000661 ORTHO05D000502 3.1e-07 60.5 47 61.7
Lalb_Chr24g0393591 Lupinus albus HOM05D000661 ORTHO05D000502 3.1e-07 60.5 41 70.7
Cfa006348 Carpinus fangiana HOM05D000661 ORTHO05D000502 4.0e-07 60.1 54 53.7
Sopen05g030960 Solanum pennellii HOM05D000661 ORTHO05D000502 4.0e-07 60.1 69 50.7
SGA_v2.0_scaffold44G16658 Striga asiatica HOM05D000661 ORTHO05D000502 5.3e-07 59.7 74 48.6
ECA232G2546 Erigeron canadensis HOM05D000661 ORTHO05D000502 6.9e-07 59.3 49 53.1
Psat5g267040 Pisum sativum HOM05D000661 ORTHO05D000502 6.9e-07 59.3 43 62.8
ClCG02G011160 Citrullus lanatus HOM05D000661 ORTHO05D000502 9.0e-07 58.9 48 58.3
FAN03G0214 Fragaria x ananassa HOM05D000661 ORTHO05D000502 9.0e-07 58.9 195 30.3
Glyma.06G301300 Glycine max HOM05D000661 ORTHO05D000502 9.0e-07 58.9 47 61.7
Medtr0939s0010 Medicago truncatula HOM05D000661 ORTHO05D000502 9.0e-07 58.9 47 59.6
CARHR135430 Cardamine hirsuta HOM05D000661 ORTHO05D000502 1.2e-06 58.5 189 28.0
FvH4_6g43870 Fragaria vesca HOM05D000661 ORTHO05D000502 1.2e-06 58.5 48 60.4
FAN05G3722 Fragaria x ananassa HOM05D000661 ORTHO05D000502 1.2e-06 58.5 48 60.4
FAN06G3632 Fragaria x ananassa HOM05D000661 ORTHO05D000502 1.2e-06 58.5 195 31.3
FAN09G1404 Fragaria x ananassa HOM05D000661 ORTHO05D000502 1.2e-06 58.5 48 60.4
FAN14G1496 Fragaria x ananassa HOM05D000661 ORTHO05D000502 1.2e-06 58.5 48 60.4
PGR142G3193 Punica granatum HOM05D000661 ORTHO05D000502 1.2e-06 58.5 51 56.9
THA.LOC104811798 Tarenaya hassleriana HOM05D000661 ORTHO05D000502 1.2e-06 58.5 366 25.1
CsaV3_6G012590 Cucumis sativus L. HOM05D000661 ORTHO05D000502 1.5e-06 58.2 48 58.3
MELO3C019763.2 Cucumis melo HOM05D000661 ORTHO05D000502 2.0e-06 57.8 47 59.6
Ca_26199_v3 Cicer arietinum L. HOM05D000661 ORTHO05D000502 2.6e-06 57.4 47 59.6
MD17G1089700 Malus domestica HOM05D000661 ORTHO05D000502 2.6e-06 57.4 47 59.6
Potri.008G073600 Populus trichocarpa HOM05D000661 ORTHO05D000502 2.6e-06 57.4 68 47.1
SHI28807 Sapria himalayana HOM05D000661 ORTHO05D000502 2.6e-06 57.4 67 47.8
FvH4_7g25200 Fragaria vesca HOM05D000661 ORTHO05D000502 3.4e-06 57.0 195 30.8
FAN02G1009 Fragaria x ananassa HOM05D000661 ORTHO05D000502 3.4e-06 57.0 48 58.3
Phvul.011G107800 Phaseolus vulgaris HOM05D000661 ORTHO05D000502 3.4e-06 57.0 47 57.4
Potri.010G183700 Populus trichocarpa HOM05D000661 ORTHO05D000502 3.4e-06 57.0 68 48.5
Medtr2g089170 Medicago truncatula HOM05D000661 ORTHO05D000502 5.8e-06 56.2 43 58.1
HPP92_013841 Vanilla planifolia HOM05D000661 ORTHO05D000502 7.6e-06 55.8 81 40.7
Sabra10G0140900 Salix brachista HOM05D000661 ORTHO05D000502 1.0e-05 55.5 73 46.6
THA.LOC104826838 Tarenaya hassleriana HOM05D000661 ORTHO05D000502 1.0e-05 55.5 68 48.5
TPR.G18079 Trifolium pratense HOM05D000661 ORTHO05D000502 1.0e-05 55.5 44 59.1


User provided reference genes

Program Settings