Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 4.1e-292 1007.3 493 100.0
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 5.4e-228 794.3 461 84.2
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 1.1e-220 770.0 461 79.6
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 4.2e-220 768.1 460 81.3
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 6.0e-211 737.6 453 76.2
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 6.7e-210 734.2 462 76.4
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 1.1e-209 733.4 463 76.2
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 5.7e-209 731.1 439 79.5
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 1.6e-208 729.6 461 76.6
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 3.1e-207 725.3 461 76.1
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.5e-206 723.0 461 75.7
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 2.0e-206 722.6 461 74.4
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 2.6e-206 722.2 455 75.8
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 5.9e-206 721.1 462 76.4
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.0e-205 720.3 435 78.6
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 2.9e-205 718.8 457 75.3
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 1.4e-204 716.5 451 73.8
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.9e-204 716.1 460 74.8
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 3.2e-204 715.3 462 74.7
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 4.2e-204 714.9 446 74.7
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 4.2e-204 714.9 446 74.7
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 5.5e-204 714.5 446 74.9
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 9.3e-204 713.8 462 74.5
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 9.3e-204 713.8 439 77.0
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.6e-203 713.0 462 72.1
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.0e-202 710.3 446 74.2
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.8e-202 709.5 462 71.9
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 3.0e-202 708.8 462 71.9
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 3.9e-202 708.4 446 74.2
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 3.9e-202 708.4 455 73.8
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 1.1e-201 706.8 461 71.8
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 1.9e-201 706.1 448 75.0
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 2.5e-201 705.7 460 73.7
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 2.5e-201 705.7 436 75.5
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 7.4e-201 704.1 461 72.9
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 7.4e-201 704.1 448 75.9
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 9.7e-201 703.7 457 73.7
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.7e-200 703.0 446 74.7
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 3.7e-200 701.8 432 76.6
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 8.2e-200 700.7 440 75.0
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 2.4e-199 699.1 461 72.2
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 3.1e-199 698.7 462 72.1
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 5.3e-199 698.0 460 71.7
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 5.3e-199 698.0 454 73.3
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 9.1e-199 697.2 461 71.4
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.5e-198 696.4 436 76.8
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 1.5e-198 696.4 432 76.4
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.5e-198 696.4 441 75.1
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 2.0e-198 696.0 461 72.7
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 2.6e-198 695.7 465 72.3
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 1.7e-197 693.0 437 74.6
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 2.2e-197 692.6 465 71.0
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 8.5e-197 690.6 495 68.1
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 5.5e-196 688.0 465 70.3
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 7.2e-196 687.6 461 70.9
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 4.7e-195 684.9 461 71.4
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 4.7e-195 684.9 448 73.9
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 6.1e-195 684.5 461 70.9
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.4e-194 683.3 431 75.4
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 1.8e-194 682.9 461 69.4
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 7.4e-193 677.6 432 73.6
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 1.7e-192 676.4 456 70.0
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 1.7e-192 676.4 430 74.7
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 4.8e-192 674.9 457 70.5
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 8.2e-192 674.1 439 72.7
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.2e-190 670.2 411 77.1
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 1.5e-190 669.8 461 69.8
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 2.6e-190 669.1 450 70.0
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 3.4e-190 668.7 461 68.5
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 5.9e-190 667.9 433 72.5
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.0e-189 667.2 483 67.7
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 1.3e-189 666.8 390 80.3
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.3e-189 666.8 483 67.3
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 1.7e-189 666.4 433 72.5
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 2.2e-189 666.0 464 67.5
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 1.1e-188 663.7 421 74.1
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 1.9e-188 662.9 451 69.0
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 7.2e-188 661.0 455 69.7
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 7.2e-188 661.0 553 59.3
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 1.6e-187 659.8 461 67.9
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 2.7e-187 659.1 461 68.3
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 4.7e-187 658.3 453 69.1
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 3.0e-186 655.6 433 70.4
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 3.0e-186 655.6 494 65.4
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 1.1e-185 653.7 451 68.5
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 3.3e-185 652.1 461 66.8
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 4.4e-185 651.7 451 68.5
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 9.7e-185 650.6 438 69.9
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.3e-184 650.2 432 71.8
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 1.3e-184 650.2 453 68.0
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 8.2e-184 647.5 444 67.8
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 3.1e-183 645.6 428 71.3
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 7.0e-183 644.4 379 79.2
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 7.0e-183 644.4 461 67.0
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 9.1e-183 644.0 462 67.5
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 9.1e-183 644.0 461 67.0
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.6e-182 643.3 466 66.7
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 2.6e-182 642.5 461 65.9
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 1.7e-181 639.8 436 69.0
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 4.2e-180 635.2 446 68.4
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 5.5e-180 634.8 453 66.4
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 9.4e-180 634.0 480 65.4
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 6.1e-179 631.3 500 60.8
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.4e-178 630.2 436 68.6
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 2.3e-178 629.4 453 66.4
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 3.0e-178 629.0 430 68.8
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 3.0e-178 629.0 430 68.8
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 3.0e-178 629.0 430 68.8
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 5.2e-178 628.2 432 68.8
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 6.7e-178 627.9 430 68.6
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 1.2e-177 627.1 455 68.1
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 2.6e-177 625.9 453 65.8
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 5.7e-177 624.8 430 68.4
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 7.5e-177 624.4 480 64.6
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 9.7e-177 624.0 442 66.3
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 1.7e-176 623.2 433 68.1
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 2.2e-176 622.9 453 65.8
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 3.7e-176 622.1 541 58.2
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 2.4e-175 619.4 435 67.4
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 3.1e-175 619.0 450 64.9
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 1.0e-173 614.0 391 74.4
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 1.7e-173 613.2 496 61.7
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 3.6e-171 605.5 470 63.4
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 3.0e-170 602.4 417 67.9
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 1.5e-169 600.1 457 63.7
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 4.4e-169 598.6 456 64.5
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 5.7e-169 598.2 433 65.6
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 2.0e-166 589.7 619 51.2
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 1.1e-164 583.9 434 67.1
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 1.9e-164 583.2 455 63.3
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 4.1e-159 565.5 405 68.1
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 4.1e-159 565.5 435 64.4
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 1.3e-157 560.5 405 64.4
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.4e-143 513.1 435 58.9
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.7e-141 506.9 390 64.1
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 5.1e-141 505.4 482 52.7
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 8.6e-141 504.6 475 55.6
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 7.3e-132 474.9 445 50.6
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.2e-131 474.2 302 75.2
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 4.7e-131 472.2 436 51.1
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 1.2e-126 457.6 416 52.6
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 4.7e-123 445.7 406 53.9
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 2.1e-115 420.2 311 65.9
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 2.4e-114 416.8 467 46.9
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 6.9e-98 362.1 246 69.9
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 1.7e-88 330.9 320 52.8
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.0e-77 295.0 215 67.0
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 8.2e-75 285.4 221 66.1
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 1.1e-50 205.3 180 54.4
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 1.4e-50 204.9 159 60.4
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 8.6e-40 169.1 100 78.0
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 4.7e-38 163.3 106 67.9
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 1.4e-37 161.8 577 26.9
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 1.8e-37 161.4 264 34.8
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 3.4e-36 157.1 149 57.0
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 1.1e-31 142.1 109 61.5
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 1.5e-31 141.7 111 65.8
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 1.9e-31 141.4 119 63.0
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 7.5e-28 129.4 86 66.3
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 1.9e-26 124.8 81 71.6
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 8.6e-24 115.9 84 66.7
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.5e-23 115.2 63 81.0
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 1.6e-22 111.7 99 54.5
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.1e-21 109.0 62 79.0
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 8.3e-19 99.4 110 53.6
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 1.7e-16 91.7 67 70.1
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 3.1e-13 80.9 47 78.7
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 2.5e-07 61.2 42 64.3
SEGI_18884 Sequoiadendron giganteum HOM05D003877 ORTHO05D038325 2.5e-07 61.2 69 39.1
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 1.6e-06 58.5 39 66.7


User provided reference genes

Program Settings