Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 2.8e-157 558.5 276 100.0
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 3.0e-119 432.2 276 75.4
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 6.8e-119 431.0 276 75.7
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 2.6e-118 429.1 277 76.2
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 3.7e-117 425.2 245 83.3
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.0e-115 419.5 278 76.3
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 3.5e-115 418.7 276 73.6
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 3.5e-115 418.7 277 75.1
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 1.0e-114 417.2 276 74.3
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 6.6e-114 414.5 278 75.9
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 6.6e-114 414.5 278 75.5
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 8.6e-114 414.1 278 76.6
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.1e-113 413.7 275 76.0
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.1e-113 413.7 277 73.6
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 1.2e-112 410.2 207 98.1
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.2e-112 410.2 275 76.7
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 3.6e-112 408.7 277 74.4
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 4.7e-112 408.3 273 73.3
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 4.7e-112 408.3 276 72.1
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 6.1e-112 407.9 278 73.0
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 3.4e-110 402.1 277 72.6
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 3.4e-110 402.1 272 72.1
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 7.5e-110 401.0 276 71.7
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 7.5e-110 401.0 276 70.3
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 1.3e-109 400.2 276 71.4
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 1.7e-109 399.8 276 71.0
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 1.7e-109 399.8 277 70.8
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 1.4e-108 396.7 277 70.4
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 1.8e-108 396.4 250 77.2
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 5.4e-108 394.8 273 70.7
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 9.2e-108 394.0 305 68.2
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 9.2e-108 394.0 278 71.9
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 1.2e-107 393.7 277 72.2
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 3.5e-107 392.1 276 70.3
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 6.0e-107 391.3 276 69.9
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 3.0e-106 389.0 276 69.9
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 3.9e-106 388.7 265 74.0
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 1.2e-104 383.6 276 68.8
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 2.1e-104 382.9 273 69.2
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 1.4e-103 380.2 273 70.3
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 2.3e-103 379.4 276 68.1
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 3.1e-103 379.0 268 70.5
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 4.0e-103 378.6 267 70.4
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 1.5e-102 376.7 277 66.4
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 2.0e-102 376.3 276 67.4
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 3.4e-102 375.6 275 68.7
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 3.4e-102 375.6 269 69.9
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 5.8e-102 374.8 267 69.7
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 9.8e-102 374.0 276 68.1
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 9.8e-102 374.0 276 66.7
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 1.3e-101 373.6 276 67.8
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.3e-101 373.6 271 71.2
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 2.2e-101 372.9 277 66.4
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 2.2e-101 372.9 276 68.1
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 2.9e-101 372.5 241 75.5
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 3.7e-101 372.1 269 69.1
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 4.9e-101 371.7 276 66.7
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 6.4e-101 371.3 248 73.8
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 1.4e-100 370.2 265 68.7
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 1.4e-100 370.2 232 78.0
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 5.4e-100 368.2 245 72.7
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 1.6e-99 366.7 278 67.3
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 3.5e-99 365.5 278 66.5
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 6.0e-99 364.8 232 76.3
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 1.0e-98 364.0 275 68.0
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 1.0e-98 364.0 269 68.8
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.0e-98 364.0 252 70.6
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 2.3e-98 362.8 276 64.1
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 2.3e-98 362.8 276 64.1
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 2.3e-98 362.8 254 69.7
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 2.3e-98 362.8 276 65.2
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 6.6e-98 361.3 276 64.1
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 8.6e-98 360.9 276 65.6
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.9e-97 359.8 207 82.1
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 1.9e-97 359.8 274 64.6
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 4.3e-97 358.6 277 67.5
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 1.2e-96 357.1 257 68.5
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 1.6e-96 356.7 277 66.1
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 2.1e-96 356.3 242 73.1
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 4.7e-96 355.1 205 82.9
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 4.7e-96 355.1 277 66.8
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 1.1e-95 354.0 203 83.7
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 1.1e-95 354.0 235 73.6
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.8e-95 353.2 277 63.9
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 2.3e-95 352.8 274 63.5
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 8.9e-95 350.9 252 69.0
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 8.9e-95 350.9 234 72.2
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 1.5e-94 350.1 277 63.5
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 2.0e-94 349.7 224 75.4
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 4.4e-94 348.6 226 74.8
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 5.8e-94 348.2 207 80.2
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 7.5e-94 347.8 234 71.4
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 7.5e-94 347.8 205 83.4
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 2.2e-93 346.3 277 63.2
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 1.9e-92 343.2 275 63.3
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 3.2e-92 342.4 267 64.4
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 4.1e-92 342.0 252 67.5
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 2.1e-91 339.7 254 67.3
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 2.7e-91 339.3 226 71.7
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 3.5e-91 339.0 275 62.2
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 4.6e-91 338.6 223 74.4
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 6.6e-90 334.7 219 72.6
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 7.3e-89 331.3 241 68.5
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.5e-86 323.6 203 77.8
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 5.4e-84 315.1 196 77.6
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 1.3e-82 310.5 210 69.0
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 4.7e-80 302.0 257 59.9
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 7.6e-78 294.7 228 64.0
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 6.4e-77 291.6 196 71.4
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 1.1e-76 290.8 250 61.6
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 7.1e-76 288.1 213 67.1
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 3.0e-74 282.7 241 60.2
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 1.4e-71 273.9 209 64.6
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 9.0e-71 271.2 233 57.5
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 3.4e-70 269.2 208 63.0
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.0e-66 257.7 182 72.5
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 2.8e-64 249.6 197 67.0
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 6.4e-61 238.4 212 57.1
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 1.4e-60 237.3 214 57.9
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 1.2e-59 234.2 212 53.8
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 3.0e-58 229.6 207 54.1
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 9.6e-57 224.6 209 51.2
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 5.3e-55 218.8 199 56.8
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 2.0e-54 216.9 130 79.2
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 1.4e-52 210.7 254 43.3
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 1.4e-52 210.7 211 51.7
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 8.2e-48 194.9 238 37.8
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 1.4e-47 194.1 109 87.2
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 1.4e-44 184.1 139 70.5
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 3.1e-39 166.4 213 39.4
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 3.0e-34 149.8 130 60.8
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 1.3e-32 144.4 111 69.4
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 1.9e-28 130.6 91 68.1
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 1.5e-25 120.9 88 70.5
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 1.1e-23 114.8 110 55.5
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 1.0e-21 108.2 133 39.8
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 1.9e-20 104.0 141 45.4
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 1.9e-12 77.4 58 69.0
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 1.6e-11 74.3 247 29.6
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 1.6e-06 57.8 59 52.5


User provided reference genes

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