Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 7.3e-93 344.0 186 100.0
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 5.8e-90 334.3 186 97.3
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 2.4e-80 302.4 185 83.2
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 3.5e-79 298.5 186 86.6
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 6.0e-79 297.7 178 88.8
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 8.2e-76 287.3 187 79.1
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 1.1e-75 287.0 186 77.4
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 4.0e-75 285.0 186 76.9
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 1.2e-74 283.5 192 76.6
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 2.6e-74 282.3 186 77.4
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 4.5e-74 281.6 186 76.9
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 5.8e-74 281.2 186 78.0
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 7.6e-74 280.8 186 76.3
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 1.7e-73 279.6 186 74.7
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 6.5e-73 277.7 186 75.3
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 1.2e-71 273.5 186 73.7
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 3.5e-71 271.9 186 73.1
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 3.5e-71 271.9 186 73.1
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 3.5e-71 271.9 186 73.1
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 6.0e-71 271.2 186 75.3
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 6.0e-71 271.2 186 73.1
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 1.3e-70 270.0 186 72.6
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 3.9e-70 268.5 187 72.2
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 5.1e-70 268.1 186 74.2
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 5.1e-70 268.1 183 73.2
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 1.5e-69 266.5 186 72.0
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 1.9e-69 266.2 187 72.7
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 2.5e-69 265.8 186 71.0
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 4.3e-69 265.0 186 72.6
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 7.4e-69 264.2 184 70.7
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 1.6e-68 263.1 185 68.6
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 1.1e-67 260.4 182 71.4
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 1.1e-67 260.4 186 69.9
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 1.4e-67 260.0 186 71.0
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.4e-67 260.0 186 69.9
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 3.1e-67 258.8 186 69.4
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 3.1e-67 258.8 186 69.4
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 4.1e-67 258.5 184 70.1
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 1.2e-66 256.9 207 67.1
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 2.6e-66 255.8 186 71.0
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 3.4e-66 255.4 184 69.6
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 3.4e-66 255.4 186 67.7
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 3.4e-66 255.4 186 70.4
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 4.5e-66 255.0 186 69.9
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 5.9e-66 254.6 186 67.7
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 7.7e-66 254.2 186 70.4
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 1.0e-65 253.8 181 70.2
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 1.0e-65 253.8 186 69.4
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 1.3e-65 253.4 184 69.6
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 2.2e-65 252.7 186 67.2
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 2.2e-65 252.7 186 67.7
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 2.2e-65 252.7 186 67.7
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 3.8e-65 251.9 186 70.4
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 8.5e-65 250.8 186 68.8
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 8.5e-65 250.8 187 66.8
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 1.4e-64 250.0 185 69.2
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 4.2e-64 248.4 186 65.1
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 1.2e-63 246.9 185 65.9
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 2.1e-63 246.1 185 68.6
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 2.1e-63 246.1 184 66.3
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 2.1e-63 246.1 184 65.8
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 2.7e-63 245.7 184 66.3
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 3.6e-63 245.4 183 67.8
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 3.6e-63 245.4 183 65.6
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 4.6e-63 245.0 187 65.2
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 1.0e-62 243.8 186 64.5
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 1.8e-62 243.0 182 65.4
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 3.9e-62 241.9 182 64.8
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 8.8e-62 240.7 187 66.3
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 1.5e-61 240.0 187 64.2
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 2.0e-61 239.6 187 64.2
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 3.3e-61 238.8 183 65.6
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 4.3e-61 238.4 181 65.7
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 5.7e-61 238.0 166 70.5
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 9.7e-61 237.3 187 63.6
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 1.1e-59 233.8 183 64.5
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 2.4e-59 232.6 187 63.1
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 4.1e-59 231.9 187 64.2
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 6.9e-59 231.1 186 66.1
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 1.7e-57 226.5 169 68.6
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 1.7e-57 226.5 165 69.7
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 5.0e-57 224.9 187 62.0
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 5.0e-57 224.9 185 61.6
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 9.4e-56 220.7 182 62.1
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 1.6e-55 219.9 182 61.5
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 1.6e-55 219.9 185 62.2
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 4.7e-55 218.4 182 61.0
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 6.1e-55 218.0 185 61.1
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 7.9e-55 217.6 185 60.0
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.8e-54 216.5 182 60.4
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 3.9e-54 215.3 185 60.0
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 3.9e-54 215.3 187 59.4
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 5.1e-54 214.9 143 74.8
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 5.1e-54 214.9 187 58.8
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 2.6e-53 212.6 189 59.8
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 4.4e-53 211.8 189 58.2
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 4.4e-53 211.8 185 58.4
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 7.4e-53 211.1 182 58.2
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 7.4e-53 211.1 185 57.8
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 1.3e-52 210.3 189 58.2
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 1.7e-52 209.9 189 58.7
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 2.2e-52 209.5 189 58.2
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 2.2e-52 209.5 189 58.2
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 2.8e-52 209.1 142 71.1
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 6.3e-52 208.0 183 56.8
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 6.3e-52 208.0 185 58.9
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 8.2e-52 207.6 182 58.2
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 2.4e-51 206.1 185 57.3
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 6.5e-49 198.0 183 58.5
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 1.2e-47 193.7 200 55.5
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 2.3e-46 189.5 203 52.7
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 6.7e-46 188.0 183 50.3
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 8.8e-46 187.6 185 48.6
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 1.3e-44 183.7 143 62.2
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 2.8e-44 182.6 189 55.0
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 6.3e-44 181.4 183 47.5
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 2.4e-43 179.5 182 48.9
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 7.0e-43 177.9 166 56.0
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 2.0e-42 176.4 186 55.4
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 2.6e-42 176.0 150 61.3
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 1.3e-41 173.7 164 62.2
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 5.0e-41 171.8 168 56.0
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.5e-40 170.2 185 47.0
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.9e-40 169.9 113 70.8
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 5.5e-40 168.3 183 46.4
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.2e-39 167.2 142 61.3
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 6.7e-38 161.4 103 72.8
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 1.5e-37 160.2 187 48.7
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 1.3e-33 147.1 185 39.5
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 3.0e-30 136.0 161 51.6
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.9e-25 119.4 104 55.8
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 2.3e-22 109.8 71 70.4
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 6.3e-20 101.7 97 57.7
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 1.4e-19 100.5 117 46.2
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 1.0e-17 94.4 138 42.8
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 6.6e-17 91.7 167 29.9
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 1.6e-15 87.0 129 31.0
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 1.4e-14 84.0 62 67.7
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 6.8e-14 81.6 72 51.4
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 1.9e-11 73.6 83 54.2
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 3.2e-11 72.8 126 31.0
PRCOL_00002083 Prasinoderma coloniale HOM05D005619 ORTHO05D006696 2.0e-10 70.1 161 29.8
QL03p009034 Quercus lobata HOM05D000946 ORTHO05D006696 5.0e-09 65.5 37 81.1


User provided reference genes

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