Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 0.0e+00 1142.5 599 100.0
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 2.7e-290 1001.5 652 84.5
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 3.5e-237 825.1 593 76.2
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 3.4e-216 755.4 657 64.4
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 2.1e-205 719.5 653 58.5
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 2.1e-197 693.0 650 58.3
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.0e-196 690.6 648 58.0
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 4.0e-193 678.7 665 60.3
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 6.9e-193 677.9 650 57.1
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 4.5e-192 675.2 659 57.2
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 3.2e-190 669.1 657 57.4
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 9.3e-190 667.5 650 56.5
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 2.1e-189 666.4 655 56.2
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 6.1e-189 664.8 653 57.0
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 6.7e-188 661.4 672 54.5
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 1.3e-186 657.1 658 55.6
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 1.6e-186 656.8 650 55.8
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 5.3e-185 651.7 622 56.9
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 3.4e-184 649.0 641 55.1
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 3.8e-183 645.6 649 54.9
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 5.0e-183 645.2 656 55.0
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 3.2e-182 642.5 654 55.0
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 7.2e-182 641.3 591 59.9
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 1.6e-181 640.2 660 54.2
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 4.6e-181 638.6 650 58.5
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 2.2e-178 629.8 658 52.7
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 3.4e-176 622.5 636 53.8
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 8.5e-175 617.8 640 53.8
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 3.2e-174 615.9 620 54.8
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 9.4e-174 614.4 658 53.2
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 2.6e-171 606.3 515 62.3
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 3.3e-171 605.9 646 53.4
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 3.7e-170 602.4 640 52.2
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 1.8e-169 600.1 646 53.9
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 3.1e-169 599.4 662 52.7
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 2.6e-168 596.3 653 52.1
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 2.6e-168 596.3 649 51.6
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 5.0e-167 592.0 651 52.7
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 5.0e-167 592.0 647 52.1
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 1.9e-166 590.1 656 52.7
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 3.2e-166 589.3 714 49.4
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 9.4e-166 587.8 642 51.6
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 2.7e-165 586.3 513 63.4
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 4.7e-165 585.5 650 52.9
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 5.2e-164 582.0 644 50.6
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 6.7e-164 581.6 641 51.6
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 2.2e-162 576.6 652 51.2
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 4.8e-162 575.5 657 50.8
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 3.1e-161 572.8 645 51.5
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 3.8e-159 565.8 635 50.2
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 5.0e-159 565.5 656 49.2
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 8.5e-159 564.7 566 55.5
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 1.5e-158 563.9 652 49.5
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 2.5e-158 563.1 531 56.5
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 2.5e-158 563.1 669 49.2
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 5.5e-158 562.0 669 49.6
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 6.1e-157 558.5 607 53.2
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.8e-156 557.0 619 52.0
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.3e-154 550.8 531 55.7
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 8.3e-154 548.1 607 52.2
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 5.4e-153 545.4 635 49.3
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 1.6e-152 543.9 637 48.5
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 2.7e-152 543.1 532 56.6
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 1.0e-151 541.2 637 49.3
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.7e-151 540.4 646 48.8
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 1.7e-151 540.4 650 48.5
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 2.9e-151 539.7 638 48.3
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 6.5e-151 538.5 635 48.2
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.9e-150 537.0 643 49.0
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 2.5e-150 536.6 656 46.5
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 3.2e-150 536.2 650 48.0
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 4.2e-150 535.8 536 54.5
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 1.4e-148 530.8 656 47.0
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 3.0e-148 529.6 651 46.5
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 5.2e-148 528.9 529 54.3
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 8.8e-148 528.1 633 48.3
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 2.2e-146 523.5 526 54.2
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 2.8e-146 523.1 653 47.9
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 6.3e-146 521.9 624 48.9
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 1.1e-145 521.2 644 49.7
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 1.1e-145 521.2 642 46.3
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 5.9e-144 515.4 645 47.3
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 1.7e-143 513.8 633 47.4
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 2.3e-143 513.5 530 54.9
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 1.1e-142 511.1 639 47.1
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 2.1e-141 506.9 620 46.9
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 8.0e-141 505.0 654 46.2
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 1.4e-140 504.2 655 45.8
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 3.0e-140 503.1 733 44.2
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 5.2e-140 502.3 613 48.0
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 8.9e-140 501.5 597 50.1
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 5.7e-139 498.8 618 48.5
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 2.9e-138 496.5 636 45.8
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 3.7e-138 496.1 636 45.3
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 3.7e-138 496.1 562 51.1
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 8.3e-138 495.0 488 56.1
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 1.8e-137 493.8 636 45.8
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 3.2e-137 493.0 511 53.8
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 1.6e-136 490.7 628 46.2
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 4.6e-136 489.2 626 47.0
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.7e-135 487.3 646 46.7
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 1.7e-135 487.3 649 45.0
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 1.7e-135 487.3 649 45.0
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 5.0e-135 485.7 637 44.6
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 5.0e-135 485.7 649 44.8
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 8.6e-135 485.0 537 51.6
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 1.9e-134 483.8 634 45.0
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 3.6e-133 479.6 534 50.6
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 6.2e-133 478.8 618 45.3
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 1.8e-132 477.2 633 44.9
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 2.3e-132 476.9 652 48.9
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 7.5e-131 471.9 650 43.8
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 7.5e-131 471.9 650 43.8
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 1.7e-130 470.7 672 42.7
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 5.4e-129 465.7 583 47.3
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 1.2e-128 464.5 651 43.5
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 3.9e-127 459.5 660 42.7
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 7.3e-126 455.3 472 52.1
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 1.8e-124 450.7 635 43.0
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 3.1e-124 449.9 391 59.8
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 8.9e-124 448.4 595 44.4
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 1.5e-123 447.6 492 50.8
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 2.7e-120 436.8 677 42.2
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 4.7e-117 426.0 443 53.3
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 1.8e-116 424.1 551 44.5
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.7e-114 417.5 695 39.7
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 3.5e-112 409.8 544 45.8
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 7.8e-112 408.7 554 46.0
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 8.9e-108 395.2 383 56.7
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 4.6e-104 382.9 448 49.8
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 4.6e-104 382.9 448 49.8
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 5.8e-99 365.9 474 46.0
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 9.0e-92 342.0 470 42.6
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 6.4e-90 335.9 577 37.8
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 2.1e-88 330.9 591 38.7
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 8.7e-79 298.9 557 35.9
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 4.8e-77 293.1 512 39.6
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 4.1e-68 263.5 354 46.0
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 1.8e-55 221.5 187 57.8
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 1.2e-51 208.8 193 53.9
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 1.6e-48 198.4 195 48.2
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 5.7e-46 189.9 378 36.0
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 2.7e-27 127.9 293 36.9
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 5.6e-25 120.2 158 36.1
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 5.4e-20 103.6 162 40.7
Oeu025172.2 Olea europaea HOM05D004604 ORTHO05D005744 1.9e-09 68.6 124 35.5
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 4.3e-09 67.4 77 49.4
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-07 62.4 39 64.1
SHI03466 Sapria himalayana HOM05D004604 ORTHO05D005744 1.2e-06 59.3 46 60.9


User provided reference genes

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