Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 0.0e+00 2320.0 1196 100.0
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 0.0e+00 2048.1 1199 90.7
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 0.0e+00 1600.9 1239 70.5
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 0.0e+00 1600.5 1200 73.6
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1584.3 1254 70.2
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 0.0e+00 1580.8 1271 68.4
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 0.0e+00 1573.9 1236 70.1
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 0.0e+00 1548.1 1234 69.0
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1535.8 1240 68.8
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1535.8 1232 68.2
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1531.2 1239 68.1
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1528.1 1232 67.9
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1526.1 1239 67.9
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1521.9 1234 68.3
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1521.9 1231 68.9
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1519.2 1229 68.8
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 0.0e+00 1515.0 1239 67.6
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1514.6 1242 66.7
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1513.8 1239 67.1
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 0.0e+00 1506.9 1228 68.4
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1504.6 1229 68.0
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1501.1 1235 68.7
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 0.0e+00 1500.0 1226 66.7
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1498.0 1240 67.3
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 0.0e+00 1498.0 1214 66.5
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1496.9 1234 66.4
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 0.0e+00 1496.9 1227 67.3
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1495.3 1234 66.3
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1495.3 1226 68.2
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1492.6 1234 66.2
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 0.0e+00 1489.2 1219 66.5
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1488.4 1236 66.3
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1487.2 1234 67.5
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 0.0e+00 1486.5 1216 67.6
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 0.0e+00 1486.1 1234 66.8
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 0.0e+00 1475.3 1230 65.8
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 0.0e+00 1475.3 1213 67.4
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1469.9 1226 66.8
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1468.4 1206 66.9
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 0.0e+00 1467.6 1408 59.7
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1459.5 1228 66.3
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1459.5 1228 66.3
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1458.0 1237 65.6
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 0.0e+00 1451.8 1234 65.2
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 0.0e+00 1451.0 1228 66.3
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 0.0e+00 1449.9 1232 64.8
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1444.5 1152 67.4
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1439.9 1202 66.1
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1437.2 1217 65.6
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 0.0e+00 1427.2 1215 65.8
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 0.0e+00 1420.6 1237 64.4
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 0.0e+00 1415.6 1227 64.1
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1399.4 1239 62.8
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 0.0e+00 1397.5 1236 62.5
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 0.0e+00 1396.7 1237 64.0
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 0.0e+00 1395.2 1217 63.8
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 0.0e+00 1390.9 1217 64.4
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1388.6 1199 62.4
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 0.0e+00 1386.3 1218 64.3
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 0.0e+00 1385.5 1218 64.0
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 0.0e+00 1384.8 1212 64.5
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1380.5 1238 62.3
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1375.1 1219 64.1
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 0.0e+00 1374.0 1217 63.8
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1373.2 1222 62.7
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 0.0e+00 1368.2 1218 64.5
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 0.0e+00 1364.7 1177 65.3
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 1361.7 1247 62.6
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 0.0e+00 1361.7 1218 61.9
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 0.0e+00 1361.3 1230 62.4
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1360.5 1261 61.9
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1360.5 1261 61.9
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1359.4 1261 61.8
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 0.0e+00 1359.0 1198 64.0
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 0.0e+00 1357.4 1218 61.7
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1357.4 1185 64.0
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 0.0e+00 1355.1 1231 62.0
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 0.0e+00 1347.0 1221 61.4
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1346.6 1205 63.4
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 0.0e+00 1346.3 1235 61.6
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 0.0e+00 1339.7 1354 58.4
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 0.0e+00 1339.3 1217 63.2
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 0.0e+00 1334.3 1151 64.2
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1330.5 1220 62.4
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 0.0e+00 1323.1 1240 60.9
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1322.8 1206 63.0
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 0.0e+00 1296.6 1254 58.5
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 0.0e+00 1288.5 1241 60.4
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1282.3 1217 61.6
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 0.0e+00 1275.8 1028 66.2
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1269.2 1229 60.1
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 0.0e+00 1261.1 787 84.1
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1254.6 1243 58.5
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 0.0e+00 1213.7 1081 61.3
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1207.2 1198 57.3
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1148.7 1088 59.7
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 0.0e+00 1145.2 1152 57.8
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1127.9 1211 56.1
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 0.0e+00 1126.7 1149 55.5
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1092.0 1008 60.6
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1085.1 1236 53.9
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 0.0e+00 1079.3 700 80.1
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 5.8e-300 1034.6 1228 51.9
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 2.3e-280 969.5 1151 49.3
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 1.2e-276 957.2 1159 50.2
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 1.5e-276 956.8 803 66.5
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 3.9e-264 915.6 725 66.6
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 4.7e-257 892.1 1261 46.4
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.3e-238 830.9 659 67.4
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 2.7e-236 823.2 947 50.7
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 2.0e-223 780.4 661 62.9
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 5.2e-216 755.7 619 65.3
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 6.6e-211 738.8 738 60.2
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 3.3e-210 736.5 1274 39.4
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 2.8e-209 733.4 607 64.6
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 6.2e-209 732.3 672 61.8
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 1.3e-195 688.0 569 65.0
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 4.7e-193 679.5 569 66.8
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 8.9e-192 675.2 1296 37.7
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.1e-181 641.7 1129 39.5
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 6.9e-176 622.5 511 64.6
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 1.7e-166 591.3 1158 36.9
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 7.9e-164 582.4 466 66.5
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.6e-161 574.7 462 66.7
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 1.0e-158 565.5 448 67.4
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 6.7e-147 526.2 415 71.8
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 8.0e-124 449.5 404 64.1
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 1.6e-108 398.7 1552 26.9
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 3.0e-94 351.3 421 49.6
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.8e-90 337.0 401 51.4
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 2.4e-88 331.6 386 52.8
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 1.7e-86 325.5 314 58.6
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 3.1e-83 314.7 493 45.0
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 6.4e-81 307.0 211 78.2
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 4.1e-80 304.3 310 53.2
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.9e-78 297.7 285 58.6
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 9.6e-77 293.1 264 59.5
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 1.4e-75 289.3 236 65.7
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 4.4e-66 257.7 203 67.5
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.1e-55 222.2 210 57.6
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.8e-54 219.2 208 57.7
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.0e-54 218.4 224 54.5
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.1e-53 216.5 204 57.8
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 9.6e-53 213.4 181 61.9
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 1.2e-47 196.4 160 64.4
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.2e-44 183.7 134 65.7
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 2.4e-43 182.2 165 63.6
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.9e-43 180.6 130 66.9
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 1.0e-41 176.8 130 66.2
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.3e-41 176.4 133 73.7
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 2.2e-41 175.6 127 66.1
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.9e-40 172.6 164 60.4
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 3.1e-35 155.2 110 75.5
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.4e-32 146.4 111 62.2
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 1.0e-30 140.2 106 63.2
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.3e-28 133.3 112 61.6
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 5.3e-27 127.9 106 72.6
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 5.3e-27 127.9 106 72.6
Cfa005276 Carpinus fangiana HOM05D004065 ORTHO05D020362 4.7e-23 114.8 79 81.0
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 6.3e-20 104.4 243 34.2
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 9.1e-19 100.5 69 71.0
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 1.3e-17 96.7 131 45.8
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 2.2e-17 95.9 164 42.7
Peaxi162Scf00658g00733 Petunia axillaris HOM05D004065 ORTHO05D004806 1.8e-14 86.3 107 56.1
Solyc06g042980.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 4.0e-14 85.1 116 50.0
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.5e-13 83.2 248 29.4
SHI22580 Sapria himalayana HOM05D004065 ORTHO05D004806 4.1e-11 75.1 133 47.4
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 5.9e-10 71.2 69 58.0
SHI22582 Sapria himalayana HOM05D004065 ORTHO05D004806 1.7e-09 69.7 85 44.7
Gohir.D13G142400 Gossypium hirsutum HOM05D000260 ORTHO05D020362 5.0e-09 68.2 63 61.9
Gorai.002G055300 Gossypium raimondii HOM05D000671 ORTHO05D000797 1.5e-08 66.6 63 60.3
Gohir.D02G008125 Gossypium hirsutum HOM05D004065 ORTHO05D000318 1.9e-08 66.2 63 60.3
Gohir.D05G040350 Gossypium hirsutum HOM05D004065 ORTHO05D020362 1.9e-08 66.2 63 60.3
Gorai.005G009800 Gossypium raimondii HOM05D004065 ORTHO05D020362 1.9e-08 66.2 63 60.3


User provided reference genes

Program Settings