Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 2.4e-101 372.1 178 100.0
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 1.3e-62 243.4 175 69.7
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 1.3e-57 226.9 175 65.7
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 1.6e-57 226.5 171 68.4
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 9.0e-56 220.7 172 65.7
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 2.0e-55 219.5 163 66.9
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 2.6e-55 219.2 172 65.1
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 3.4e-55 218.8 163 66.3
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 7.6e-55 217.6 173 63.6
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 1.1e-53 213.8 167 67.7
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 1.1e-53 213.8 174 62.1
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 1.1e-53 213.8 163 66.3
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 1.9e-53 213.0 164 63.4
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 9.3e-53 210.7 162 63.0
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 3.5e-52 208.8 194 58.2
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 6.0e-52 208.0 172 61.0
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 7.9e-52 207.6 192 57.8
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 1.0e-51 207.2 164 62.8
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 1.3e-51 206.8 163 63.8
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 1.3e-51 206.8 165 62.4
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 1.8e-51 206.5 164 61.6
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 1.8e-51 206.5 163 64.4
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 1.8e-51 206.5 164 63.4
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 2.3e-51 206.1 206 58.3
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 3.0e-51 205.7 163 63.2
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 3.9e-51 205.3 176 59.7
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 5.1e-51 204.9 175 58.9
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 5.1e-51 204.9 175 60.0
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 6.7e-51 204.5 169 60.4
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 1.1e-50 203.8 174 59.8
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.1e-50 203.8 163 63.2
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 1.1e-50 203.8 164 61.6
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.5e-50 203.4 164 62.8
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 1.9e-50 203.0 168 61.9
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 1.9e-50 203.0 166 62.7
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 5.6e-50 201.4 164 61.6
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 5.6e-50 201.4 164 61.6
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 5.6e-50 201.4 164 62.8
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 7.4e-50 201.1 166 61.4
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 7.4e-50 201.1 177 61.0
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.3e-49 200.3 164 62.2
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 1.6e-49 199.9 165 62.4
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 2.1e-49 199.5 166 62.7
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 8.1e-49 197.6 175 57.1
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 1.1e-48 197.2 164 59.8
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 1.1e-48 197.2 175 57.7
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 1.4e-48 196.8 163 62.0
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 1.8e-48 196.4 168 60.7
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.8e-48 196.4 164 59.8
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 1.8e-48 196.4 166 60.2
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 1.8e-48 196.4 165 60.6
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 1.8e-48 196.4 175 60.6
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 3.1e-48 195.7 162 61.1
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 5.3e-48 194.9 173 57.8
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 5.3e-48 194.9 164 61.0
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 9.0e-48 194.1 164 59.8
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 9.0e-48 194.1 165 57.6
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 1.5e-47 193.4 165 58.2
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 1.5e-47 193.4 174 58.6
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 1.5e-47 193.4 173 58.4
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 2.0e-47 193.0 175 58.3
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 7.6e-47 191.0 164 58.5
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 9.9e-47 190.7 181 54.1
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 1.3e-46 190.3 162 60.5
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 6.4e-46 188.0 178 54.5
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 8.4e-46 187.6 164 59.1
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.4e-45 186.8 182 55.5
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 4.2e-45 185.3 163 58.9
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 4.2e-45 185.3 169 52.7
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 7.1e-45 184.5 168 55.4
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 9.3e-45 184.1 168 56.5
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 1.6e-44 183.3 165 57.0
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 2.1e-44 183.0 166 55.4
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 2.1e-44 183.0 166 56.6
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 2.1e-44 183.0 163 55.8
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 2.7e-44 182.6 165 55.2
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 6.0e-44 181.4 190 52.6
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 6.0e-44 181.4 170 52.4
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 6.0e-44 181.4 163 56.4
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 1.3e-43 180.3 165 55.8
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 1.3e-43 180.3 175 55.4
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 1.3e-43 180.3 165 56.4
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 1.8e-43 179.9 173 53.8
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 1.8e-43 179.9 165 55.8
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 1.8e-43 179.9 165 55.8
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 2.3e-43 179.5 172 52.9
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 3.0e-43 179.1 164 57.3
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 6.7e-43 177.9 169 54.4
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 1.1e-42 177.2 154 59.1
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.5e-42 176.8 164 56.7
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 3.3e-42 175.6 165 55.8
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 3.3e-42 175.6 165 55.8
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 4.3e-42 175.3 169 52.7
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 4.3e-42 175.3 193 50.8
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 4.3e-42 175.3 184 51.1
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 1.6e-41 173.3 184 48.4
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 2.8e-41 172.6 163 55.2
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.1e-40 170.6 173 52.6
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 4.0e-40 168.7 163 52.8
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 4.0e-40 168.7 162 51.9
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 1.2e-39 167.2 162 52.5
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 2.6e-39 166.0 162 51.9
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 5.8e-39 164.9 163 52.1
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 5.8e-39 164.9 162 51.9
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 2.5e-37 159.5 165 52.1
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 2.5e-37 159.5 162 48.8
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 7.1e-37 157.9 171 49.7
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 9.3e-37 157.5 145 55.2
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 9.3e-37 157.5 168 49.4
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 3.0e-35 152.5 100 69.0
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 1.1e-34 150.6 98 73.5
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 1.9e-34 149.8 169 45.6
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 2.5e-34 149.4 98 71.4
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 2.5e-34 149.4 96 72.9
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 9.7e-34 147.5 97 70.1
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 1.3e-30 137.1 182 42.3
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.9e-29 133.3 163 42.3
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.2e-29 132.5 161 42.9
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 9.3e-29 131.0 162 42.0
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.2e-28 130.6 163 42.3
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 3.6e-28 129.0 133 49.6
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 4.6e-28 128.6 94 64.9
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 4.6e-28 128.6 162 43.8
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.1e-26 124.0 147 45.6
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 6.9e-24 114.8 116 53.4
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.4e-23 112.5 98 54.1
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.4e-23 112.5 98 55.1
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.1e-21 107.5 67 70.1
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 1.4e-19 100.5 176 36.9
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 8.8e-19 97.8 97 51.5
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 8.2e-17 91.3 163 34.4
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 4.5e-15 85.5 165 33.9
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.1e-13 80.9 97 46.4
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 1.4e-11 73.9 56 66.1
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 1.8e-11 73.6 45 73.3
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 5.2e-11 72.0 192 30.7
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 8.8e-11 71.2 45 68.9
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 2.2e-09 66.6 50 62.0
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.1e-08 64.3 91 37.4
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 5.3e-08 62.0 44 65.9
SEGI_21412 Sequoiadendron giganteum HOM05D005240 ORTHO05D006471 8.5e-06 54.7 56 51.8


User provided reference genes

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