Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 4.3e-124 448.0 220 100.0
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 1.1e-71 273.9 254 61.4
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 7.4e-68 261.2 252 59.1
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 8.5e-56 221.1 253 53.4
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 1.7e-51 206.8 246 45.9
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 3.1e-50 202.6 247 45.7
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 3.5e-49 199.1 253 45.5
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 3.5e-49 199.1 253 45.5
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 7.7e-49 198.0 253 44.3
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 5.0e-48 195.3 256 45.3
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 5.5e-47 191.8 254 44.5
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 9.4e-47 191.0 246 45.5
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.0e-45 187.6 245 44.5
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.4e-45 187.2 257 42.4
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 1.4e-45 187.2 254 43.3
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 2.3e-45 186.4 257 42.0
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 2.3e-45 186.4 252 43.7
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 5.2e-45 185.3 254 45.3
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 8.8e-45 184.5 244 44.7
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 3.3e-44 182.6 244 43.4
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 2.2e-43 179.9 252 44.4
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 3.7e-43 179.1 252 44.4
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.1e-42 177.6 254 41.3
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 1.4e-42 177.2 262 40.5
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 1.8e-42 176.8 254 43.7
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 4.1e-42 175.6 251 41.8
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 1.2e-41 174.1 245 43.3
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 3.5e-41 172.6 249 41.8
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.3e-40 170.6 252 40.9
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 2.2e-40 169.9 255 40.8
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 2.2e-40 169.9 254 39.4
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 3.8e-40 169.1 251 40.6
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 6.5e-40 168.3 244 42.6
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.1e-39 167.5 252 40.5
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 3.2e-39 166.0 247 38.9
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 2.1e-38 163.3 252 38.1
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 4.7e-38 162.2 267 39.7
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 1.0e-37 161.0 264 37.1
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 1.4e-37 160.6 252 38.1
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 1.8e-37 160.2 228 43.0
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 1.2e-36 157.5 244 39.8
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 1.5e-36 157.1 249 35.3
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 1.5e-36 157.1 245 38.8
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 1.3e-35 154.1 258 37.2
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 2.8e-35 152.9 241 37.8
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 3.7e-35 152.5 253 37.5
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 1.4e-34 150.6 244 37.7
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 1.8e-34 150.2 237 35.9
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 2.4e-34 149.8 247 38.1
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 7.0e-34 148.3 237 37.6
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 1.2e-33 147.5 215 43.7
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 1.2e-33 147.5 243 37.0
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 2.0e-33 146.7 283 35.3
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 2.0e-33 146.7 181 45.3
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 2.0e-33 146.7 227 40.5
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 4.5e-33 145.6 260 35.8
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 1.3e-32 144.1 215 39.5
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 6.5e-32 141.7 245 36.7
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 1.5e-31 140.6 228 39.0
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 1.9e-31 140.2 217 39.6
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 3.2e-31 139.4 243 36.2
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 3.2e-31 139.4 264 35.6
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 4.2e-31 139.0 229 35.8
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 1.6e-30 137.1 219 36.5
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 2.8e-30 136.3 228 36.4
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 6.1e-30 135.2 260 34.2
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 8.0e-30 134.8 241 34.4
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 5.2e-29 132.1 241 35.3
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 5.2e-29 132.1 216 36.6
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 6.8e-29 131.7 226 35.0
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 8.8e-29 131.3 240 35.0
Sabra17G0080400 Salix brachista HOM05D005427 ORTHO05D006461 1.5e-28 130.6 201 39.3
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 4.4e-28 129.0 229 37.1
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 5.7e-28 128.6 229 37.1
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 7.5e-28 128.3 222 36.5
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 1.3e-27 127.5 251 33.5
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 1.7e-27 127.1 207 37.7
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 3.7e-27 125.9 247 34.0
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 4.9e-27 125.6 219 38.4
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 6.3e-27 125.2 224 36.6
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 1.4e-26 124.0 216 35.6
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 1.8e-26 123.6 224 36.2
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 3.1e-26 122.9 243 34.6
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 3.1e-26 122.9 243 34.6
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 3.1e-26 122.9 243 34.6
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 4.1e-26 122.5 243 34.6
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 4.1e-26 122.5 243 34.6
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 5.4e-26 122.1 239 33.5
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 5.4e-26 122.1 215 36.3
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 9.2e-26 121.3 237 34.2
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 9.2e-26 121.3 224 37.5
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 1.2e-25 120.9 224 36.6
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 1.6e-25 120.6 214 36.0
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 2.0e-25 120.2 224 35.7
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 5.9e-25 118.6 216 35.2
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 1.0e-24 117.9 248 33.1
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 1.7e-24 117.1 240 34.2
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 2.9e-24 116.3 220 33.2
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 6.6e-24 115.2 261 32.2
Hma1.2p1_0561F.1_g178960 Hydrangea macrophylla HOM05D005427 ORTHO05D006461 8.6e-24 114.8 144 46.5
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 1.5e-23 114.0 226 35.4
Cc09_g02990 Coffea canephora HOM05D005427 ORTHO05D006461 3.3e-23 112.8 95 57.9
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 5.6e-23 112.1 244 33.6
Nitab4.5_0006709g0040 Nicotiana tabacum HOM05D005427 ORTHO05D006461 1.2e-22 110.9 87 54.0
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 2.8e-22 109.8 226 34.5
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 6.1e-22 108.6 221 35.3
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 4.0e-21 105.9 245 31.0
TWI77G0140 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 5.2e-21 105.5 138 47.1
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 6.8e-21 105.1 264 30.3
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 1.2e-20 104.4 228 32.5
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 2.0e-20 103.6 195 35.4
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 2.6e-20 103.2 248 28.6
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 2.6e-20 103.2 248 28.6
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 4.4e-20 102.4 209 34.9
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 7.5e-20 101.7 262 32.1
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 7.5e-20 101.7 225 29.3
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 3.7e-19 99.4 243 30.0
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 4.9e-19 99.0 252 27.4
SalBow7G4264 Salvia bowleyana HOM05D005427 ORTHO05D006461 8.3e-19 98.2 110 46.4
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 1.1e-18 97.8 251 27.1
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 1.8e-18 97.1 205 32.7
MSTRG.375 Avicennia marina HOM05D005427 ORTHO05D006461 7.0e-18 95.1 93 51.6
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 4.6e-17 92.4 267 27.3
MBI16_g14676_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 7.8e-17 91.7 146 38.4
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 2.3e-16 90.1 207 33.8
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 2.3e-16 90.1 207 33.8
EL10Ac6g13479 Beta vulgaris HOM05D005427 ORTHO05D006461 8.6e-16 88.2 89 48.3
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 2.1e-14 83.6 106 46.2
Ah.16g109230 Amaranthus hybridus HOM05D005427 ORTHO05D006461 7.5e-12 75.1 74 47.3
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 1.7e-11 73.9 44 72.7
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 1.7e-11 73.9 44 72.7
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.1e-10 71.2 44 65.9
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 1.4e-10 70.9 218 27.5
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 1.4e-10 70.9 124 33.1
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 4.1e-10 69.3 42 66.7
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 5.4e-10 68.9 186 26.9
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 4.6e-09 65.9 232 22.8
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 7.8e-09 65.1 44 56.8
Lsat_1_v5_gn_7_80981 Lactuca sativa HOM05D005427 ORTHO05D006461 3.0e-08 63.2 65 49.2
Actinidia11934 Actinidia chinensis HOM05D005427 ORTHO05D006461 5.0e-08 62.4 120 34.2
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 2.5e-07 60.1 42 61.9
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 5.6e-07 58.9 182 23.1


User provided reference genes

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