Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16887 Corylus avellana HOM05D002510 ORTHO05D006928 6.2e-174 614.0 303 100.0
CiPaw.01G272400 Carya illinoinensis HOM05D002510 ORTHO05D006928 2.8e-134 482.3 287 85.0
QL08p055746 Quercus lobata HOM05D002510 ORTHO05D006928 1.0e-128 463.8 306 80.7
Glyma.20G179800 Glycine max HOM05D002510 ORTHO05D006928 1.8e-117 426.4 290 74.8
Psat6g183480 Pisum sativum HOM05D002510 ORTHO05D006928 1.8e-117 426.4 290 75.5
GSVIVG01016268001 Vitis vinifera HOM05D002510 ORTHO05D006928 2.4e-117 426.0 290 74.1
Medtr1g095000 Medicago truncatula HOM05D002510 ORTHO05D006928 3.1e-117 425.6 290 75.2
Potri.008G039300 Populus trichocarpa HOM05D002510 ORTHO05D006928 7.0e-117 424.5 296 74.0
Prupe.2G213200 Prunus persica HOM05D002510 ORTHO05D006928 1.2e-116 423.7 300 73.0
Dinv31320 Davidia involucrata HOM05D002510 ORTHO05D006928 1.6e-116 423.3 286 76.2
Glyma.10G210800 Glycine max HOM05D002510 ORTHO05D006928 3.5e-116 422.2 290 73.8
Lj5g0027397 Lotus japonicus HOM05D002510 ORTHO05D006928 1.0e-115 420.6 290 73.8
arahy.Tifrunner.gnm1.ann1.D0MVTX Arachis hypogaea HOM05D002510 ORTHO05D006928 2.9e-115 419.1 292 72.9
arahy.Tifrunner.gnm1.ann1.B5KM0B Arachis hypogaea HOM05D002510 ORTHO05D006928 8.5e-115 417.5 292 72.9
Thecc.10G074800 Theobroma cacao HOM05D002510 ORTHO05D006928 1.1e-114 417.2 291 73.2
RcHm_v2.0_Chr1g0363321 Rosa chinensis HOM05D002510 ORTHO05D006928 3.2e-114 415.6 295 72.5
Lalb_Chr02g0142201 Lupinus albus HOM05D002510 ORTHO05D006928 5.5e-114 414.8 291 72.5
MD01G1108300 Malus domestica HOM05D002510 ORTHO05D006928 5.5e-114 414.8 293 73.0
Phvul.007G094800 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 9.4e-114 414.1 285 73.7
MD07G1174400 Malus domestica HOM05D002510 ORTHO05D006928 1.2e-113 413.7 300 71.3
Manes.07G100200 Manihot esculenta HOM05D002510 ORTHO05D006928 8.0e-113 411.0 297 71.7
FAN03G1741 Fragaria x ananassa HOM05D002510 ORTHO05D006928 1.0e-112 410.6 297 71.4
FvH4_7g19440 Fragaria vesca HOM05D002510 ORTHO05D006928 1.4e-112 410.2 299 71.2
Lj1C913T4 Lonicera japonica HOM05D002510 ORTHO05D006928 3.0e-112 409.1 296 70.3
Duzib114G0372 Durio zibethinus HOM05D002510 ORTHO05D006928 4.0e-112 408.7 290 72.8
FAN06G0282 Fragaria x ananassa HOM05D002510 ORTHO05D006928 6.7e-112 407.9 299 70.6
FAN01G2940 Fragaria x ananassa HOM05D002510 ORTHO05D007210 8.8e-112 407.5 296 70.9
FAN10G3768 Fragaria x ananassa HOM05D002510 ORTHO05D007210 8.8e-112 407.5 299 71.2
FAN10G0968 Fragaria x ananassa HOM05D002510 ORTHO05D007210 4.4e-111 405.2 301 70.1
Gohir.A10G205600 Gossypium hirsutum HOM05D002510 ORTHO05D006928 2.8e-110 402.5 236 80.9
Duzib128G0305 Durio zibethinus HOM05D002510 ORTHO05D006928 6.3e-110 401.4 290 71.7
TAR369G0428 Trochodendron aralioides HOM05D002510 ORTHO05D006928 8.2e-110 401.0 293 70.6
Sabra08G0027000 Salix brachista HOM05D002510 ORTHO05D006928 2.4e-109 399.4 226 82.7
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 3.1e-109 399.1 228 83.3
DCAR_019102 Daucus carota HOM05D002510 ORTHO05D006928 3.1e-109 399.1 286 68.9
TWI15G0405 Tripterygium wilfordii HOM05D002510 ORTHO05D006928 4.1e-109 398.7 286 70.3
Eucgr.G02836 Eucalyptus grandis HOM05D002510 ORTHO05D006928 3.5e-108 395.6 284 71.5
Gorai.011G239300 Gossypium raimondii HOM05D002510 ORTHO05D006928 3.5e-108 395.6 286 72.7
CsaV3_6G036450 Cucumis sativus L. HOM05D002510 ORTHO05D006928 1.0e-107 394.0 292 68.8
Potri.010G222900 Populus trichocarpa HOM05D002510 ORTHO05D006928 1.0e-107 394.0 289 70.9
Actinidia06769 Actinidia chinensis HOM05D002510 ORTHO05D006928 1.3e-107 393.7 294 71.4
ClCG08G007520 Citrullus lanatus HOM05D002510 ORTHO05D006928 5.0e-107 391.7 287 70.7
Atru.chr12.758 Acer truncatum HOM05D002510 ORTHO05D006928 8.5e-107 391.0 292 69.9
MELO3C019798.2 Cucumis melo HOM05D002510 ORTHO05D006928 1.9e-106 389.8 293 67.9
HanXRQChr14g0456861 Helianthus annuus HOM05D002510 ORTHO05D006928 1.9e-106 389.8 285 69.1
Lalb_Chr06g0162351 Lupinus albus HOM05D002510 ORTHO05D006928 3.2e-106 389.0 245 77.6
Oeu031347.1 Olea europaea HOM05D002510 ORTHO05D006928 3.2e-106 389.0 286 69.6
Ciclev10032329m.g Citrus clementina HOM05D002510 ORTHO05D006928 5.5e-106 388.3 290 68.3
Lsat_1_v5_gn_2_112320 Lactuca sativa HOM05D002510 ORTHO05D006928 9.4e-106 387.5 285 68.8
Hund12054 Selenicereus undatus HOM05D002510 ORTHO05D006928 2.1e-105 386.3 290 67.6
Gohir.D10G213800 Gossypium hirsutum HOM05D002510 ORTHO05D006928 1.8e-104 383.3 224 82.1
CSS0017911 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 2.3e-104 382.9 229 79.9
PGR142G1169 Punica granatum HOM05D002510 ORTHO05D006928 2.3e-104 382.9 284 69.7
CARHR133780 Cardamine hirsuta HOM05D002510 ORTHO05D006928 5.2e-104 381.7 298 67.4
Sp4g21360 Schrenkiella parvula HOM05D002510 ORTHO05D006928 6.8e-104 381.3 296 67.9
Nitab4.5_0002524g0010 Nicotiana tabacum HOM05D002510 ORTHO05D006928 1.2e-103 380.6 263 70.3
THA.LOC104827063 Tarenaya hassleriana HOM05D002510 ORTHO05D006928 1.5e-103 380.2 254 73.2
Glyma.02G074000 Glycine max HOM05D002510 ORTHO05D006928 2.0e-103 379.8 289 70.6
Cc02_g11320 Coffea canephora HOM05D002510 ORTHO05D006928 4.4e-103 378.6 280 68.9
Nn2g10810 Nelumbo nucifera HOM05D002510 ORTHO05D006928 5.7e-103 378.3 226 78.8
Sc20g0001820 Simmondsia chinensis HOM05D002510 ORTHO05D006928 5.7e-103 378.3 290 67.6
MSTRG.9172 Avicennia marina HOM05D002510 ORTHO05D006928 7.5e-103 377.9 236 76.7
Sed0007153 Sechium edule HOM05D002510 ORTHO05D006928 9.8e-103 377.5 233 78.5
EL10Ac3g05855 Beta vulgaris HOM05D002510 ORTHO05D006928 1.3e-102 377.1 290 64.5
PGSC0003DMG400033889 Solanum tuberosum HOM05D002510 ORTHO05D006928 1.3e-102 377.1 262 72.1
Carub.0004s2104 Capsella rubella HOM05D002510 ORTHO05D006928 1.7e-102 376.7 293 66.6
AL4G36300 Arabidopsis lyrata HOM05D002510 ORTHO05D006928 3.7e-102 375.6 284 68.7
Nitab4.5_0001053g0060 Nicotiana tabacum HOM05D002510 ORTHO05D006928 4.8e-102 375.2 286 67.5
CAN.G131.8 Capsicum annuum HOM05D002510 ORTHO05D006928 6.3e-102 374.8 264 70.1
Actinidia38854 Actinidia chinensis HOM05D002510 ORTHO05D006928 8.3e-102 374.4 291 67.0
AT2G39000 Arabidopsis thaliana HOM05D002510 ORTHO05D006928 8.3e-102 374.4 287 67.2
Thhalv10017009m.g Eutrema salsugineum HOM05D002510 ORTHO05D006928 1.4e-101 373.6 294 66.7
Migut.F01984 Erythranthe guttata HOM05D002510 ORTHO05D006928 5.4e-101 371.7 259 71.8
AUR62018249 Chenopodium quinoa HOM05D002510 ORTHO05D006928 7.0e-101 371.3 289 66.4
Sabra10G0172300 Salix brachista HOM05D002510 ORTHO05D006928 7.0e-101 371.3 227 78.0
CSS0041581 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 1.2e-100 370.5 290 67.2
AUR62037755 Chenopodium quinoa HOM05D002510 ORTHO05D006928 1.2e-100 370.5 244 73.0
Ah.10g032650 Amaranthus hybridus HOM05D002510 ORTHO05D006928 2.0e-100 369.8 224 77.2
BcaC02g12914 Brassica carinata HOM05D002510 ORTHO05D006928 2.0e-100 369.8 290 66.6
CSS0006577 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 2.0e-100 369.8 290 66.9
TAR623G0044 Trochodendron aralioides HOM05D002510 ORTHO05D006928 2.7e-100 369.4 293 66.2
C04p67010 Brassica napus HOM05D002510 ORTHO05D006928 2.3e-99 366.3 290 66.2
PSO063G7611 Papaver somniferum HOM05D002510 ORTHO05D006928 2.3e-99 366.3 287 64.1
Phvul.004G083200 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 2.9e-99 365.9 292 67.8
BolC4t28203H Brassica oleracea HOM05D002510 ORTHO05D006928 3.8e-99 365.5 292 66.4
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 3.8e-99 365.5 254 74.8
PSO339G5277 Papaver somniferum HOM05D002510 ORTHO05D006928 4.2e-98 362.1 287 63.8
VMungo1197G0001 Vigna mungo HOM05D002510 ORTHO05D006928 1.6e-97 360.1 292 64.4
Aqoxy1G01228 Aquilegia oxysepala HOM05D002510 ORTHO05D006928 2.8e-97 359.4 257 67.7
Lalb_Chr03g0035921 Lupinus albus HOM05D002510 ORTHO05D006928 4.7e-97 358.6 292 66.4
BraA04t18437Z Brassica rapa HOM05D002510 ORTHO05D006928 2.3e-96 356.3 302 62.9
Lj3g0006441 Lotus japonicus HOM05D002510 ORTHO05D006928 1.2e-95 354.0 229 74.2
vmacro04869 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 1.5e-95 353.6 289 63.3
A04p29730 Brassica napus HOM05D002510 ORTHO05D006928 9.2e-93 344.4 325 58.8
Rhsim03G0120400 Rhododendron simsii HOM05D002510 ORTHO05D006928 2.0e-92 343.2 227 74.9
VMungo0464G1224 Vigna mungo HOM05D002510 ORTHO05D006928 5.6e-90 335.1 293 62.1
SGA_v2.0_scaffold62G21410 Striga asiatica HOM05D002510 ORTHO05D006928 1.4e-88 330.5 243 67.9
arahy.Tifrunner.gnm1.ann1.DB5KD4 Arachis hypogaea HOM05D002510 ORTHO05D006928 3.0e-88 329.3 290 62.1
arahy.Tifrunner.gnm1.ann1.L5PTYD Arachis hypogaea HOM05D002510 ORTHO05D006928 4.4e-87 325.5 290 61.4
Migut.F01753 Erythranthe guttata HOM05D002510 ORTHO05D006928 4.9e-86 322.0 226 69.5
HPP92_014717 Vanilla planifolia HOM05D002510 ORTHO05D006928 1.6e-84 317.0 227 66.1
Lj3g0019343 Lotus japonicus HOM05D002510 ORTHO05D006928 7.8e-84 314.7 241 65.6
ECA238G3090 Erigeron canadensis HOM05D002510 ORTHO05D006928 1.3e-83 313.9 268 60.8
SalBow4G2249 Salvia bowleyana HOM05D002510 ORTHO05D006928 1.3e-83 313.9 238 66.4
ATR0048G011 Amborella trichopoda HOM05D002510 ORTHO05D006928 3.0e-83 312.8 254 60.2
CDE04G1444 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 1.9e-82 310.1 230 64.3
Dinv36437 Davidia involucrata HOM05D002510 ORTHO05D006928 9.5e-82 307.8 241 70.1
Cpa.g.sc53.85 Carica papaya HOM05D002510 ORTHO05D006928 8.0e-81 304.7 176 83.5
Peaxi162Scf01719g00013 Petunia axillaris HOM05D002510 ORTHO05D006928 2.9e-78 296.2 265 58.1
Os02g0806000 Oryza sativa ssp. japonica HOM05D002510 ORTHO05D006928 1.4e-77 293.9 252 56.3
Atru.chr12.782 Acer truncatum HOM05D002510 ORTHO05D006928 4.1e-77 292.4 180 78.3
Gohir.D10G213900 Gossypium hirsutum HOM05D002510 ORTHO05D006928 9.2e-77 291.2 167 82.6
Gohir.A10G205500 Gossypium hirsutum HOM05D002510 ORTHO05D006928 1.8e-72 276.9 169 79.9
SEGI_15474 Sequoiadendron giganteum HOM05D002510 ORTHO05D006928 8.9e-72 274.6 212 62.7
unitig_88.g27817 Utricularia gibba HOM05D002510 ORTHO05D006928 4.9e-70 268.9 231 60.2
SalBow3G0053 Salvia bowleyana HOM05D002510 ORTHO05D006928 1.7e-67 260.4 167 72.5
Oeu014386.1 Olea europaea HOM05D002510 ORTHO05D006928 5.6e-66 255.4 166 74.1
vmacro07070 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 4.7e-57 225.7 199 63.3
CDE06G2540 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 4.4e-55 219.2 188 59.6
CAN.G790.5 Capsicum annuum HOM05D002510 ORTHO05D006928 9.9e-55 218.0 138 72.5
Aa31LG5G20680 Aethionema arabicum HOM05D002510 ORTHO05D006928 7.1e-53 211.8 196 59.2
Sopen04g011630 Solanum pennellii HOM05D002510 ORTHO05D006928 2.5e-50 203.4 142 69.7
Lj2g0015916 Lotus japonicus HOM05D002510 ORTHO05D006928 2.0e-47 193.7 201 59.7
Solyc04g025240.2 Solanum lycopersicum HOM05D002510 ORTHO05D006928 2.6e-47 193.4 148 64.9
Glyma.16G155400 Glycine max HOM05D002510 ORTHO05D006928 1.3e-46 191.0 251 50.6
Mapoly0033s0159 Marchantia polymorpha HOM05D002510 ORTHO05D006928 1.3e-46 191.0 304 39.8
Haze_18780 Corylus avellana HOM05D000278 ORTHO05D005754 1.0e-43 181.4 131 73.3
SMO134G0014 Selaginella moellendorffii HOM05D002510 ORTHO05D006928 1.1e-42 177.9 221 43.9
Zm00001eb172140 Zea mays HOM05D002510 ORTHO05D006928 3.3e-42 176.4 135 62.2
Solyc04g025230.1 Solanum lycopersicum HOM05D002510 ORTHO05D006928 1.4e-32 144.4 91 74.7
Ciclev10024578m.g Citrus clementina HOM05D002510 ORTHO05D006928 2.0e-23 114.0 92 60.9
AagrBONN_evm.TU.Sc2ySwM_117.96 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.2e-21 105.5 129 46.5
Nn3g20716 Nelumbo nucifera HOM05D002510 ORTHO05D006928 7.2e-21 105.5 134 47.0
Actinidia32448 Actinidia chinensis HOM05D002510 ORTHO05D006928 6.1e-20 102.4 86 59.3
Cre16.g662650 Chlamydomonas reinhardtii HOM05D002510 ORTHO05D006928 3.8e-14 83.2 246 27.2
PRCOL_00005349 Prasinoderma coloniale HOM05D002510 ORTHO05D006928 6.1e-12 75.9 87 49.4
A03p21800 Brassica napus HOM05D002510 ORTHO05D006928 1.8e-11 74.3 42 71.4
MCO13G231 Micromonas commoda HOM05D005733 ORTHO05D006928 8.2e-09 65.5 87 36.8
Actinidia37356 Actinidia chinensis HOM05D002510 ORTHO05D006928 1.8e-08 64.3 51 62.7
PRCOL_00000981 Prasinoderma coloniale HOM05D006270 ORTHO05D007755 8.5e-06 55.5 101 33.7


User provided reference genes

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