Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 5.0e-207 724.2 359 100.0
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 3.0e-199 698.4 359 96.4
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 2.5e-174 615.5 364 83.8
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 5.6e-166 587.8 359 83.6
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 5.5e-161 571.2 363 78.0
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 2.3e-159 565.8 364 79.7
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 9.6e-158 560.5 363 77.7
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 2.4e-156 555.8 365 78.1
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 8.4e-154 547.4 365 78.1
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 1.1e-153 547.0 359 74.4
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 2.5e-153 545.8 363 74.9
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 5.5e-153 544.7 363 77.7
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 1.6e-152 543.1 361 74.0
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 2.1e-152 542.7 361 77.0
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 2.1e-152 542.7 361 74.2
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 7.9e-152 540.8 360 73.3
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 1.3e-151 540.0 363 76.9
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 6.7e-151 537.7 380 71.3
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 8.7e-151 537.3 348 76.4
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 1.9e-150 536.2 362 73.5
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 4.3e-150 535.0 363 76.3
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 9.7e-150 533.9 359 74.1
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 2.2e-149 532.7 362 73.2
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 2.2e-149 532.7 360 73.9
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 2.8e-149 532.3 359 74.4
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 2.8e-149 532.3 362 73.8
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 3.7e-149 531.9 381 71.1
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 4.8e-149 531.6 355 73.8
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 6.3e-149 531.2 365 72.6
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.1e-148 530.4 381 70.6
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.4e-148 530.0 362 73.2
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 1.8e-148 529.6 363 71.6
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 3.1e-148 528.9 362 73.2
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 4.1e-148 528.5 360 73.9
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 4.1e-148 528.5 362 72.9
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 5.3e-148 528.1 355 73.2
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 6.9e-148 527.7 362 73.2
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 6.9e-148 527.7 362 72.7
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 9.0e-148 527.3 359 73.5
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 2.0e-147 526.2 381 70.3
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 2.0e-147 526.2 363 71.9
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 1.0e-146 523.9 363 71.9
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 2.2e-146 522.7 384 69.0
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 2.9e-146 522.3 365 71.8
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 3.8e-146 521.9 362 71.8
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 5.0e-146 521.5 361 73.1
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 6.5e-146 521.2 365 71.5
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 1.9e-145 519.6 361 70.9
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 2.5e-145 519.2 365 71.8
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 2.5e-145 519.2 363 71.1
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 1.6e-144 516.5 364 72.3
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 1.6e-144 516.5 370 72.4
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 3.0e-143 512.3 378 68.8
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 5.1e-143 511.5 365 70.4
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 1.1e-142 510.4 361 72.0
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 2.5e-142 509.2 365 70.4
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 7.4e-142 507.7 371 69.3
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 1.3e-141 506.9 361 68.7
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 4.8e-141 505.0 374 68.4
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 4.8e-141 505.0 364 70.9
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 8.2e-141 504.2 364 70.3
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 6.9e-140 501.1 359 69.9
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 6.9e-140 501.1 365 69.9
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 1.2e-139 500.4 364 69.2
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 1.5e-139 500.0 362 67.7
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 5.9e-139 498.0 364 69.2
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 7.7e-139 497.7 359 69.9
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 7.7e-139 497.7 345 71.6
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 7.7e-139 497.7 387 66.1
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 2.9e-138 495.7 362 69.1
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 5.0e-138 495.0 357 68.3
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 8.5e-138 494.2 345 70.7
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 7.2e-137 491.1 349 68.8
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 7.2e-137 491.1 365 68.2
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 2.7e-136 489.2 362 67.1
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 5.1e-135 485.0 344 68.3
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 5.1e-135 485.0 350 69.7
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 4.4e-134 481.9 356 69.9
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 5.7e-134 481.5 349 67.0
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 7.4e-134 481.1 345 68.1
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 3.5e-131 472.2 349 65.6
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 5.9e-131 471.5 361 65.1
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 3.8e-130 468.8 347 66.3
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 1.9e-129 466.5 367 62.9
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 1.9e-129 466.5 347 66.0
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 2.7e-128 462.6 365 66.6
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 3.6e-128 462.2 346 64.7
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 6.1e-128 461.5 344 64.8
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 6.1e-128 461.5 344 64.8
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 2.0e-126 456.4 397 62.5
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 5.7e-126 454.9 321 70.7
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 1.7e-125 453.4 379 62.5
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 5.3e-124 448.4 325 70.5
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 4.7e-120 435.3 320 68.4
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 5.2e-119 431.8 309 70.2
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 3.8e-114 415.6 349 59.9
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 1.5e-113 413.7 263 75.3
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 4.4e-110 402.1 251 75.3
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 2.7e-107 392.9 323 61.6
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 5.7e-102 375.2 322 61.8
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 7.5e-102 374.8 320 60.0
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 1.3e-93 347.4 358 52.8
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 2.7e-91 339.7 265 67.2
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 3.6e-88 329.3 262 61.8
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 3.1e-87 326.2 201 76.6
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 3.7e-85 319.3 193 76.7
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 1.4e-76 290.8 163 83.4
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 7.3e-73 278.5 226 64.2
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 8.9e-71 271.6 282 47.2
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 2.6e-70 270.0 215 69.3
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 6.9e-63 245.4 178 65.7
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 4.4e-62 242.7 179 63.7
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 2.1e-59 233.8 130 83.1
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 3.8e-53 213.0 236 47.0
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 3.0e-50 203.4 364 34.6
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 3.1e-47 193.4 113 76.1
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 4.0e-47 193.0 124 75.8
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 3.1e-39 166.8 131 62.6
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 1.0e-37 161.8 133 57.9
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 2.2e-37 160.6 141 56.7
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 1.1e-36 158.3 133 57.1
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 6.7e-34 149.1 232 39.2
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 8.7e-34 148.7 200 42.5
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 5.7e-33 146.0 73 97.3
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 2.9e-29 133.7 142 57.0
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 2.9e-29 133.7 142 57.0
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 8.5e-29 132.1 143 51.7
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 2.5e-28 130.6 84 72.6
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 4.3e-25 119.8 75 73.3
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 9.7e-25 118.6 63 87.3
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 1.3e-24 118.2 113 58.4
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 9.4e-20 102.1 109 47.7
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 1.5e-17 94.7 92 59.8
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 2.5e-12 77.4 45 80.0
Medtr8g102042 Medicago truncatula HOM05D005612 ORTHO05D007014 5.5e-12 76.3 62 62.9
Lalb_Chr08g0243441 Lupinus albus HOM05D005612 ORTHO05D007014 1.8e-10 71.2 45 73.3
Dinv39084 Davidia involucrata HOM05D005612 ORTHO05D007014 4.1e-07 60.1 105 36.2


User provided reference genes

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