Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 9.6e-292 1006.1 517 100.0
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 1.1e-244 849.7 476 93.9
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 2.4e-133 479.9 481 61.1
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 7.4e-127 458.4 480 58.8
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 3.3e-90 336.7 486 46.7
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 7.0e-85 318.9 479 43.6
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 1.1e-77 295.0 485 43.7
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 2.1e-76 290.8 485 43.5
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 8.6e-75 285.4 485 43.3
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 4.3e-74 283.1 521 41.5
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 5.6e-74 282.7 488 42.2
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.6e-73 281.2 488 42.0
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 2.1e-73 280.8 485 42.5
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 5.8e-71 272.7 486 42.0
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 2.9e-70 270.4 448 43.8
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 5.4e-69 266.2 525 38.9
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 3.5e-68 263.5 488 40.2
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 8.6e-67 258.8 486 40.1
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 2.8e-65 253.8 502 39.8
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 3.6e-65 253.4 489 38.2
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 1.8e-64 251.1 526 40.3
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 2.4e-64 250.8 486 38.5
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 5.2e-64 249.6 489 38.7
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 6.4e-62 242.7 489 39.3
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 8.4e-62 242.3 483 39.8
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 9.2e-61 238.8 500 38.6
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 1.6e-60 238.0 500 39.0
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 1.1e-58 231.9 491 38.7
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 2.8e-57 227.3 493 37.9
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 3.6e-57 226.9 503 37.2
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 6.2e-57 226.1 542 35.1
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 3.1e-56 223.8 491 37.5
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 3.8e-54 216.9 483 37.1
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 4.9e-54 216.5 485 36.7
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 1.1e-53 215.3 484 35.5
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 5.4e-53 213.0 479 36.7
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 7.1e-53 212.6 441 37.6
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 1.2e-52 211.8 479 38.6
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 2.1e-52 211.1 499 35.7
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 3.5e-52 210.3 483 37.3
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 6.0e-52 209.5 209 57.4
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 1.0e-51 208.8 483 36.6
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 3.9e-51 206.8 483 36.9
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 6.6e-51 206.1 492 36.2
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 8.7e-51 205.7 511 34.6
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 1.9e-50 204.5 511 34.8
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 7.3e-50 202.6 165 67.9
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 1.3e-49 201.8 487 37.0
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 1.3e-49 201.8 210 57.1
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 1.6e-49 201.4 515 34.4
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 1.4e-48 198.4 354 42.7
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 6.9e-48 196.1 479 36.1
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 1.2e-47 195.3 465 37.6
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 7.6e-47 192.6 538 32.7
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 1.7e-46 191.4 430 36.3
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 1.1e-45 188.7 498 34.9
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 1.6e-44 184.9 482 36.1
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 4.6e-44 183.3 581 32.4
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 3.0e-43 180.6 517 32.3
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 5.1e-43 179.9 496 34.9
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 6.7e-43 179.5 496 35.1
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 6.7e-43 179.5 491 33.6
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 7.4e-42 176.0 506 33.4
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 2.8e-41 174.1 491 33.6
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 8.1e-41 172.6 525 33.5
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 1.4e-40 171.8 514 34.2
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 4.0e-40 170.2 437 37.5
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 4.0e-40 170.2 206 50.0
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 5.3e-40 169.9 481 33.3
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 9.0e-40 169.1 521 32.2
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 9.0e-40 169.1 351 38.5
MD02G1237300 Malus domestica HOM05D006793 ORTHO05D003476 4.5e-39 166.8 480 31.0
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 5.8e-39 166.4 361 38.0
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 7.6e-39 166.0 504 32.1
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 1.3e-38 165.2 408 35.8
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 7.1e-37 159.5 383 37.6
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 1.6e-36 158.3 522 31.8
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 1.6e-36 158.3 169 55.0
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 3.5e-36 157.1 375 36.8
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 1.8e-35 154.8 499 32.5
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 2.3e-35 154.5 466 32.0
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 2.3e-35 154.5 499 31.3
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 5.1e-35 153.3 501 30.5
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 6.7e-35 152.9 106 69.8
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 2.5e-34 151.0 490 31.8
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 1.0e-30 139.0 503 31.2
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 3.2e-29 134.0 362 35.4
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 3.2e-29 134.0 504 28.6
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 3.2e-29 134.0 498 29.9
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 1.6e-28 131.7 288 37.2
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 2.1e-28 131.3 487 29.6
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 2.3e-27 127.9 154 50.0
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 1.5e-26 125.2 503 31.0
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 3.3e-26 124.0 108 63.9
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 7.4e-26 122.9 320 33.8
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 4.1e-24 117.1 494 28.7
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 9.0e-24 115.9 141 48.2
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 9.0e-24 115.9 141 48.2
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 9.0e-24 115.9 169 45.0
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 4.5e-23 113.6 104 57.7
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 5.0e-22 110.2 115 49.6
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 5.0e-22 110.2 123 52.8
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 2.5e-21 107.8 67 83.6
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 3.2e-21 107.5 392 30.4
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 3.2e-21 107.5 268 36.9
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 3.6e-20 104.0 183 40.4
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 3.6e-20 104.0 85 63.5
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 4.6e-20 103.6 170 40.6
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 7.9e-20 102.8 69 72.5
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 3.9e-19 100.5 346 30.9
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 3.9e-19 100.5 346 30.9
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 2.8e-17 94.4 333 29.7
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 2.8e-17 94.4 324 30.9
CSS0050149 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 4.8e-17 93.6 281 32.7
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 4.8e-17 93.6 52 84.6
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 1.4e-16 92.0 350 29.7
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 2.5e-13 81.3 165 35.8
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 2.6e-10 71.2 103 36.9
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 3.3e-10 70.9 72 45.8
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 9.7e-10 69.3 61 50.8
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 1.3e-09 68.9 93 37.6
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 2.2e-09 68.2 84 41.7
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 2.2e-09 68.2 82 43.9
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 2.8e-09 67.8 80 38.8
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 3.7e-09 67.4 78 39.7
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 8.2e-09 66.2 78 42.3
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 8.2e-09 66.2 84 41.7
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 1.8e-08 65.1 53 60.4
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 1.8e-08 65.1 98 39.8
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 2.4e-08 64.7 71 39.4
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 4.1e-08 63.9 133 30.1
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 4.1e-08 63.9 250 26.0
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 4.1e-08 63.9 74 39.2
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 7.0e-08 63.2 86 34.9
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 9.1e-08 62.8 103 37.9
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 9.1e-08 62.8 216 27.8
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 9.1e-08 62.8 87 33.3
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 1.2e-07 62.4 54 51.9
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 1.5e-07 62.0 103 37.9
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 2.0e-07 61.6 324 28.1
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 2.6e-07 61.2 107 35.5
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 2.6e-07 61.2 56 46.4
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 2.6e-07 61.2 87 32.2
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 2.6e-07 61.2 207 28.5
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 3.5e-07 60.8 184 27.2
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 3.5e-07 60.8 61 45.9
BcaB01g04480 Brassica carinata HOM05D012436 ORTHO05D003476 4.5e-07 60.5 116 32.8
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 5.9e-07 60.1 76 36.8
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 5.9e-07 60.1 74 37.8
Os02g0638000 Oryza sativa ssp. japonica HOM05D008057 ORTHO05D003476 5.9e-07 60.1 78 37.2
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 5.9e-07 60.1 73 41.1
RcHm_v2.0_Chr7g0218101 Rosa chinensis HOM05D015681 ORTHO05D003476 1.0e-06 59.3 66 47.0
BcaB01g04549 Brassica carinata HOM05D012436 ORTHO05D003476 1.3e-06 58.9 63 46.0
A03p12360 Brassica napus HOM05D012436 ORTHO05D003476 1.3e-06 58.9 63 46.0
BolC3t13894H Brassica oleracea HOM05D012436 ORTHO05D003476 1.3e-06 58.9 63 46.0
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 1.7e-06 58.5 146 28.1
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 2.2e-06 58.2 78 38.5
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 2.2e-06 58.2 161 30.4
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 2.9e-06 57.8 90 34.4
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 3.8e-06 57.4 161 29.8
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 3.8e-06 57.4 61 41.0
arahy.Tifrunner.gnm1.ann1.RQNS35 Arachis hypogaea HOM05D008057 ORTHO05D003476 5.0e-06 57.0 85 38.8
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 5.0e-06 57.0 161 30.4
VMungo0464G0225 Vigna mungo HOM05D008057 ORTHO05D003476 5.0e-06 57.0 70 35.7
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 6.5e-06 56.6 274 24.5
C03p14510 Brassica napus HOM05D012436 ORTHO05D003476 8.5e-06 56.2 113 32.7
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 8.5e-06 56.2 218 26.6


User provided reference genes

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