Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 4.8e-67 257.7 128 100.0
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 3.9e-45 184.9 131 76.3
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 5.1e-37 157.9 128 63.3
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.1e-36 156.8 130 68.5
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 1.9e-31 139.4 132 59.8
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 5.5e-31 137.9 132 59.8
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 2.6e-25 119.0 153 50.3
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 6.1e-22 107.8 124 49.2
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 4.4e-20 101.7 125 48.8
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 4.8e-19 98.2 125 43.2
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 6.3e-19 97.8 125 45.6
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 1.1e-18 97.1 130 44.6
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 1.4e-18 96.7 122 45.1
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.4e-18 96.7 126 46.0
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 7.0e-18 94.4 125 44.8
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 1.2e-17 93.6 126 43.7
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 1.6e-17 93.2 126 43.7
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 1.6e-17 93.2 125 48.0
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.5e-17 92.0 123 43.1
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.5e-17 92.0 123 43.1
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 4.5e-17 91.7 128 44.5
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 5.9e-17 91.3 137 43.8
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.0e-16 90.5 128 44.5
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.7e-16 89.7 123 42.3
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 2.9e-16 89.0 111 45.9
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 5.0e-16 88.2 125 44.8
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 5.0e-16 88.2 127 44.9
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 6.5e-16 87.8 129 43.4
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 6.5e-16 87.8 122 42.6
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 8.5e-16 87.4 127 43.3
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 8.5e-16 87.4 72 58.3
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 8.5e-16 87.4 112 49.1
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 1.9e-15 86.3 110 48.2
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 2.5e-15 85.9 113 41.6
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 4.2e-15 85.1 123 44.7
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 4.2e-15 85.1 126 44.4
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 5.5e-15 84.7 90 53.3
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 1.2e-14 83.6 118 44.1
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.2e-14 83.6 128 41.4
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 1.2e-14 83.6 124 43.5
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 1.6e-14 83.2 135 41.5
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.6e-14 83.2 73 54.8
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 1.6e-14 83.2 140 37.9
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 2.1e-14 82.8 77 51.9
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 2.7e-14 82.4 131 37.4
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 2.7e-14 82.4 128 40.6
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 2.7e-14 82.4 109 46.8
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 3.6e-14 82.0 133 39.8
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.6e-14 82.0 116 42.2
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 3.6e-14 82.0 128 42.2
Nitab4.5_0000593g0370 Nicotiana tabacum HOM05D005304 ORTHO05D004438 8.0e-14 80.9 108 44.4
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.4e-13 80.1 116 42.2
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 1.4e-13 80.1 125 38.4
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 1.8e-13 79.7 121 41.3
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 1.8e-13 79.7 94 47.9
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 2.3e-13 79.3 137 36.5
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 2.3e-13 79.3 145 37.2
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.0e-13 79.0 77 50.6
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 4.0e-13 78.6 106 46.2
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 5.2e-13 78.2 125 39.2
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 6.8e-13 77.8 71 56.3
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 6.8e-13 77.8 105 41.9
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 8.8e-13 77.4 85 50.6
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 1.2e-12 77.0 78 55.1
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 1.2e-12 77.0 148 35.1
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 1.2e-12 77.0 122 41.0
Lalb_Chr03g0036331 Lupinus albus HOM05D005304 ORTHO05D004438 1.5e-12 76.6 127 40.9
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 2.0e-12 76.3 99 40.4
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 2.6e-12 75.9 108 42.6
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 2.6e-12 75.9 77 49.4
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 3.4e-12 75.5 76 50.0
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 3.4e-12 75.5 115 46.1
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 4.4e-12 75.1 106 44.3
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 5.7e-12 74.7 81 46.9
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 1.3e-11 73.6 98 36.7
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 1.3e-11 73.6 94 48.9
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.7e-11 73.2 76 50.0
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 2.2e-11 72.8 82 51.2
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.2e-11 72.8 82 51.2
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.2e-11 72.8 82 51.2
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.2e-11 72.8 82 51.2
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 2.8e-11 72.4 59 62.7
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 3.7e-11 72.0 123 36.6
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 4.8e-11 71.6 107 40.2
Solyc03g071710.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 6.3e-11 71.2 123 39.0
Sopen03g019970 Solanum pennellii HOM05D005304 ORTHO05D004438 6.3e-11 71.2 123 39.0
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 8.3e-11 70.9 71 50.7
PGSC0003DMG400016914 Solanum tuberosum HOM05D005304 ORTHO05D004438 8.3e-11 70.9 123 35.0
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 8.3e-11 70.9 81 50.6
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 1.4e-10 70.1 118 39.8
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 1.4e-10 70.1 71 53.5
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 1.8e-10 69.7 126 42.9
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.4e-10 69.3 59 59.3
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 2.4e-10 69.3 74 44.6
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 3.1e-10 68.9 82 50.0
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 3.1e-10 68.9 76 44.7
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 4.1e-10 68.6 84 48.8
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 5.4e-10 68.2 107 44.9
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 9.1e-10 67.4 60 60.0
Sed0006013 Sechium edule HOM05D005304 ORTHO05D004438 9.1e-10 67.4 89 40.4
Migut.F01597 Erythranthe guttata HOM05D005304 ORTHO05D004438 1.2e-09 67.0 107 45.8
Eucgr.J01032 Eucalyptus grandis HOM05D005304 ORTHO05D004438 1.2e-09 67.0 82 46.3
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 1.2e-09 67.0 75 48.0
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.6e-09 66.6 61 57.4
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.0e-09 66.2 61 57.4
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 2.7e-09 65.9 78 50.0
SHI54636 Sapria himalayana HOM05D005304 ORTHO05D004438 2.7e-09 65.9 73 52.1
PGSC0003DMG400023483 Solanum tuberosum HOM05D005304 ORTHO05D004438 2.7e-09 65.9 73 50.7
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 3.5e-09 65.5 83 49.4
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.5e-09 65.5 78 50.0
Lalb_Chr19g0129331 Lupinus albus HOM05D005304 ORTHO05D004438 4.5e-09 65.1 55 56.4
BcaC05g29454 Brassica carinata HOM05D008699 ORTHO05D012283 5.9e-09 64.7 132 37.9
A05p38650 Brassica napus HOM05D008699 ORTHO05D012283 5.9e-09 64.7 132 37.9
BraA05t22656Z Brassica rapa HOM05D008699 ORTHO05D012283 5.9e-09 64.7 132 37.9
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 5.9e-09 64.7 76 47.4
PGSC0003DMG400027330 Solanum tuberosum HOM05D005304 ORTHO05D004438 7.7e-09 64.3 71 50.7
BcaB04g18593 Brassica carinata HOM05D008699 ORTHO05D012283 1.7e-08 63.2 134 35.8
BcaNung04931 Brassica carinata HOM05D008699 ORTHO05D012283 1.7e-08 63.2 132 35.6
Migut.F01894 Erythranthe guttata HOM05D005304 ORTHO05D004438 1.7e-08 63.2 122 36.9
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 1.7e-08 63.2 98 40.8
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 1.7e-08 63.2 58 51.7
Solyc11g007860.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 1.7e-08 63.2 69 52.2
C05p57520 Brassica napus HOM05D008699 ORTHO05D012283 2.2e-08 62.8 132 37.1
BolC5t34409H Brassica oleracea HOM05D008699 ORTHO05D012283 2.2e-08 62.8 132 37.1
Hma1.2p1_0454F.1_g156290 Hydrangea macrophylla HOM05D005304 ORTHO05D004438 2.2e-08 62.8 124 35.5
Ciclev10033003m.g Citrus clementina HOM05D005304 ORTHO05D004438 2.9e-08 62.4 84 45.2
PGR142G4012 Punica granatum HOM05D005304 ORTHO05D016259 2.9e-08 62.4 77 45.5
RcHm_v2.0_Chr5g0056381 Rosa chinensis HOM05D025255 ORTHO05D004438 3.8e-08 62.0 75 48.0
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 8.5e-08 60.8 77 46.8
Sopen11g003720 Solanum pennellii HOM05D005304 ORTHO05D004438 8.5e-08 60.8 71 47.9
BcaB04g21232 Brassica carinata HOM05D008699 ORTHO05D012283 1.5e-07 60.1 132 36.4
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 1.5e-07 60.1 96 39.6
DCAR_019059 Daucus carota HOM05D005304 ORTHO05D004438 1.5e-07 60.1 60 53.3
Eucgr.B03916 Eucalyptus grandis HOM05D005304 ORTHO05D004438 1.5e-07 60.1 74 50.0
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.5e-07 60.1 74 43.2
FAN11G2118 Fragaria x ananassa HOM05D025255 ORTHO05D004438 1.9e-07 59.7 71 50.7
Lj3g0006440 Lotus japonicus HOM05D014522 ORTHO05D004438 1.9e-07 59.7 79 46.8
Medtr4g056580 Medicago truncatula HOM05D014522 ORTHO05D004438 1.9e-07 59.7 76 43.4
TPR.G31694 Trifolium pratense HOM05D014522 ORTHO05D004438 1.9e-07 59.7 80 45.0
BcaNung04932 Brassica carinata HOM05D008699 ORTHO05D012283 2.5e-07 59.3 136 36.0
Eucgr.G02732 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.5e-07 59.3 79 49.4
Eucgr.J00398 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.5e-07 59.3 75 42.7
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.5e-07 59.3 80 45.0
BolC1t05388H Brassica oleracea HOM05D008699 ORTHO05D012283 3.2e-07 58.9 136 36.8
BraA01t04245Z Brassica rapa HOM05D008699 ORTHO05D012283 3.2e-07 58.9 136 36.0
Nitab4.5_0001163g0010 Nicotiana tabacum HOM05D005304 ORTHO05D004438 3.2e-07 58.9 59 52.5
SEGI_05316 Sequoiadendron giganteum HOM05D018057 ORTHO05D004438 5.5e-07 58.2 105 35.2
Sc25g0001350 Simmondsia chinensis HOM05D005304 ORTHO05D004438 5.5e-07 58.2 84 44.0
AL3G21910 Arabidopsis lyrata HOM05D008699 ORTHO05D012283 7.2e-07 57.8 136 34.6
A01p41700 Brassica napus HOM05D008699 ORTHO05D012283 7.2e-07 57.8 136 36.0
SEGI_13512 Sequoiadendron giganteum HOM05D018057 ORTHO05D012767 7.2e-07 57.8 53 58.5
SEGI_20981 Sequoiadendron giganteum HOM05D018057 ORTHO05D012767 7.2e-07 57.8 53 58.5
Sopen05g033870 Solanum pennellii HOM05D005304 ORTHO05D004438 9.4e-07 57.4 74 44.6
Actinidia06715 Actinidia chinensis HOM05D005304 ORTHO05D004438 1.2e-06 57.0 97 44.3
Carub.0003s0976 Capsella rubella HOM05D008699 ORTHO05D012283 1.6e-06 56.6 137 34.3
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.6e-06 56.6 82 39.0
CAN.G135.30 Capsicum annuum HOM05D021137 ORTHO05D004438 2.1e-06 56.2 57 54.4
FAN16G1536 Fragaria x ananassa HOM05D025255 ORTHO05D004438 2.1e-06 56.2 71 47.9
FvH4_3g30440 Fragaria vesca HOM05D025255 ORTHO05D004438 2.7e-06 55.8 60 55.0
Thhalv10009156m.g Eutrema salsugineum HOM05D010843 ORTHO05D012975 3.6e-06 55.5 55 56.4
PGR102G2181 Punica granatum HOM05D005304 ORTHO05D004438 3.6e-06 55.5 71 43.7
Sc20g0001450 Simmondsia chinensis HOM05D005304 ORTHO05D004438 3.6e-06 55.5 90 37.8
vmacro20146 Vaccinium macrocarpon HOM05D005967 ORTHO05D005174 3.6e-06 55.5 67 44.8
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 4.7e-06 55.1 53 49.1
FAN21G1648 Fragaria x ananassa HOM05D025255 ORTHO05D004438 4.7e-06 55.1 73 47.9
Sopen11g003740 Solanum pennellii HOM05D021137 ORTHO05D004438 4.7e-06 55.1 62 48.4
ATR0998G003 Amborella trichopoda HOM05D018057 ORTHO05D004438 6.1e-06 54.7 56 51.8
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 6.1e-06 54.7 88 38.6
Lj3g0014047 Lotus japonicus HOM05D005967 ORTHO05D005174 6.1e-06 54.7 84 39.3
Solyc11g007880.1 Solanum lycopersicum HOM05D021137 ORTHO05D004438 6.1e-06 54.7 59 45.8
BcaC01g04175 Brassica carinata HOM05D008699 ORTHO05D012283 8.0e-06 54.3 131 35.1
C03p44240 Brassica napus HOM05D008699 ORTHO05D012283 8.0e-06 54.3 131 35.1
BolC3t16694H Brassica oleracea HOM05D008699 ORTHO05D012283 8.0e-06 54.3 131 35.1
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 8.0e-06 54.3 53 49.1
MBI05_g30241_MAGBIO Magnolia biondii HOM05D005967 ORTHO05D005174 8.0e-06 54.3 114 33.3


User provided reference genes

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