Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16781 Corylus avellana HOM05D003470 ORTHO05D004157 0.0e+00 1980.7 1084 100.0
Haze_16780 Corylus avellana HOM05D003470 ORTHO05D004157 0.0e+00 1271.5 733 94.4
Duzib114G1051 Durio zibethinus HOM05D003470 ORTHO05D004157 1.1e-124 452.2 965 38.3
Thecc.10G090100 Theobroma cacao HOM05D003470 ORTHO05D004157 5.7e-121 439.9 634 46.2
Aqoxy1G01047 Aquilegia oxysepala HOM05D003470 ORTHO05D004157 3.5e-118 430.6 556 48.7
Gohir.A10G200100 Gossypium hirsutum HOM05D003470 ORTHO05D004157 5.9e-118 429.9 1094 35.4
Ciclev10033678m.g Citrus clementina HOM05D003470 ORTHO05D004157 6.6e-117 426.4 640 46.1
TAR633G0390 Trochodendron aralioides HOM05D003470 ORTHO05D004157 1.1e-116 425.6 1139 34.2
TAR623G0591 Trochodendron aralioides HOM05D003470 ORTHO05D004157 8.0e-115 419.5 700 43.6
Haze_16782 Corylus avellana HOM05D003470 ORTHO05D004157 5.2e-114 416.8 604 50.3
Duzib106G0260 Durio zibethinus HOM05D003470 ORTHO05D004157 2.6e-113 414.5 891 38.6
COL.COLO4_32876 Corchorus olitorius HOM05D003470 ORTHO05D004157 4.1e-111 407.1 983 35.2
PSO339G3515 Papaver somniferum HOM05D003470 ORTHO05D004157 1.7e-109 401.7 667 41.5
TWI38G0957 Tripterygium wilfordii HOM05D003470 ORTHO05D004157 3.3e-108 397.5 640 43.0
Sabra08G0020000 Salix brachista HOM05D003470 ORTHO05D004157 4.0e-106 390.6 1065 34.6
MD14G1098000 Malus domestica HOM05D003470 ORTHO05D004157 1.4e-103 382.1 1012 32.8
Manes.10G053000 Manihot esculenta HOM05D003470 ORTHO05D004157 1.4e-103 382.1 569 46.6
PSO063G0006 Papaver somniferum HOM05D003470 ORTHO05D004157 7.0e-103 379.8 1124 32.9
Gorai.011G233700 Gossypium raimondii HOM05D003470 ORTHO05D004157 3.9e-101 374.0 1174 32.8
DCAR_006389 Daucus carota HOM05D003470 ORTHO05D004157 9.5e-100 369.4 1039 33.2
Potri.008G029800 Populus trichocarpa HOM05D003470 ORTHO05D004157 8.1e-99 366.3 1077 33.4
TAR369G0117 Trochodendron aralioides HOM05D003470 ORTHO05D004157 1.8e-98 365.2 544 47.2
Nn6g35185 Nelumbo nucifera HOM05D003470 ORTHO05D004157 4.4e-97 360.5 639 40.8
Gohir.D10G208000 Gossypium hirsutum HOM05D003470 ORTHO05D004157 2.9e-96 357.8 1094 32.6
CSS0002390 Camellia sinensis var. sinensis HOM05D003470 ORTHO05D004157 1.2e-94 352.4 1108 32.5
Nn2g13883 Nelumbo nucifera HOM05D003470 ORTHO05D004157 4.6e-94 350.5 619 41.2
AUR62035493 Chenopodium quinoa HOM05D003470 ORTHO05D004157 8.9e-90 336.3 546 40.3
CSS0012208 Camellia sinensis var. sinensis HOM05D003470 ORTHO05D004157 6.4e-88 330.1 617 39.2
CSS0007947 Camellia sinensis var. sinensis HOM05D003470 ORTHO05D004157 1.1e-87 329.3 621 39.3
Eucgr.G02735 Eucalyptus grandis HOM05D003470 ORTHO05D004157 5.4e-87 327.0 1002 32.5
MD12G1103600 Malus domestica HOM05D003470 ORTHO05D004157 3.5e-86 324.3 1045 30.0
Dinv37350 Davidia involucrata HOM05D003470 ORTHO05D004157 4.6e-86 323.9 1121 31.9
Haze_19469 Corylus avellana HOM05D003470 ORTHO05D004157 6.6e-85 320.1 1120 29.6
Sed0009504 Sechium edule HOM05D003470 ORTHO05D004157 1.1e-84 319.3 579 38.9
ClCG08G007930 Citrullus lanatus HOM05D003470 ORTHO05D004157 1.8e-82 312.0 911 32.7
ECA238G1102 Erigeron canadensis HOM05D003470 ORTHO05D004157 1.8e-82 312.0 645 36.7
GSVIVG01016161001 Vitis vinifera HOM05D003470 ORTHO05D004157 5.2e-82 310.5 1074 30.0
Glyma.10G198700 Glycine max HOM05D003470 ORTHO05D004157 2.6e-81 308.1 556 41.2
QL07p041535 Quercus lobata HOM05D003470 ORTHO05D004157 2.9e-80 304.7 1091 29.6
Prupe.7G123700 Prunus persica HOM05D003470 ORTHO05D004157 4.9e-80 303.9 1050 30.6
CiPaw.09G004500 Carya illinoinensis HOM05D003470 ORTHO05D004157 4.2e-79 300.8 1121 30.0
Sc20g0001480 Simmondsia chinensis HOM05D003470 ORTHO05D004157 1.2e-78 299.3 1119 30.5
Actinidia18557 Actinidia chinensis HOM05D003470 ORTHO05D004157 1.6e-78 298.9 771 34.5
Atru.chr8.1716 Acer truncatum HOM05D003470 ORTHO05D004157 2.7e-78 298.1 1044 28.8
CiPaw.10G002200 Carya illinoinensis HOM05D003470 ORTHO05D004157 2.3e-77 295.0 717 34.2
VMungo0720G1037 Vigna mungo HOM05D003470 ORTHO05D004157 3.0e-77 294.7 677 36.0
RcHm_v2.0_Chr3g0471201 Rosa chinensis HOM05D003470 ORTHO05D004157 6.6e-77 293.5 1030 30.8
Medtr1g090807 Medicago truncatula HOM05D003470 ORTHO05D004157 1.5e-76 292.4 516 41.1
Psat6g173600 Pisum sativum HOM05D003470 ORTHO05D004157 2.5e-76 291.6 545 39.8
Ca_10457_v3 Cicer arietinum L. HOM05D003470 ORTHO05D004157 5.6e-76 290.4 527 41.0
TWI74G0295 Tripterygium wilfordii HOM05D003470 ORTHO05D004157 5.6e-76 290.4 931 30.7
TPR.G37812 Trifolium pratense HOM05D003470 ORTHO05D004157 2.0e-73 282.0 475 42.5
Sc06g0002130 Simmondsia chinensis HOM05D003470 ORTHO05D004157 2.4e-71 275.0 686 32.7
Phvul.007G145600 Phaseolus vulgaris HOM05D003470 ORTHO05D004157 6.0e-70 270.4 522 38.9
Thecc.05G074600 Theobroma cacao HOM05D003470 ORTHO05D004157 8.7e-69 266.5 995 28.8
Sopen11g003760 Solanum pennellii HOM05D003470 ORTHO05D004157 1.5e-65 255.8 1102 28.1
GSVIVG01033709001 Vitis vinifera HOM05D003470 ORTHO05D004157 6.4e-64 250.4 1078 28.9
Lalb_Chr02g0151131 Lupinus albus HOM05D003470 ORTHO05D004157 2.4e-63 248.4 1030 30.2
FAN05G3818 Fragaria x ananassa HOM05D003470 ORTHO05D004157 3.2e-63 248.1 840 30.4
Lsat_1_v5_gn_2_103301 Lactuca sativa HOM05D003470 ORTHO05D004157 3.2e-63 248.1 1091 28.6
Zm00001eb404310 Zea mays HOM05D003470 ORTHO05D004157 2.1e-62 245.4 962 28.2
Nitab4.5_0000593g0330 Nicotiana tabacum HOM05D003470 ORTHO05D004157 1.8e-61 242.3 559 34.9
Solyc11g007900.3 Solanum lycopersicum HOM05D003470 ORTHO05D004157 2.3e-61 241.9 1098 27.6
Duzib128G1576 Durio zibethinus HOM05D003470 ORTHO05D004157 1.3e-59 236.1 1073 28.0
Duzib093G1940 Durio zibethinus HOM05D003470 ORTHO05D004157 4.8e-59 234.2 910 28.6
Lj5g0018822 Lotus japonicus HOM05D003470 ORTHO05D004157 1.1e-58 233.0 824 30.2
Nitab4.5_0000255g0010 Nicotiana tabacum HOM05D003470 ORTHO05D004157 1.1e-58 233.0 1064 27.6
Actinidia26639 Actinidia chinensis HOM05D003470 ORTHO05D004157 1.4e-58 232.6 616 33.6
CDE06G1109 Ceratophyllum demersum HOM05D003470 ORTHO05D004157 1.2e-57 229.6 507 34.9
FAN05G4328 Fragaria x ananassa HOM05D003470 ORTHO05D004157 1.2e-57 229.6 801 29.8
Nitab4.5_0004731g0020 Nicotiana tabacum HOM05D003470 ORTHO05D004157 1.3e-56 226.1 968 27.8
Manes.08G016800 Manihot esculenta HOM05D003470 ORTHO05D004157 1.4e-55 222.6 502 34.3
FvH4_6g17113 Fragaria vesca HOM05D003470 ORTHO05D004157 2.5e-55 221.9 926 28.1
CAN.G135.27 Capsicum annuum HOM05D003470 ORTHO05D004157 4.2e-55 221.1 1115 27.4
PGR142G1299 Punica granatum HOM05D003470 ORTHO05D004157 4.2e-55 221.1 995 27.7
Sabra06G0094700 Salix brachista HOM05D003470 ORTHO05D004157 4.2e-55 221.1 1026 26.6
Cpa.g.sc5.136 Carica papaya HOM05D003470 ORTHO05D004157 2.7e-54 218.4 570 31.1
Peaxi162Scf00543g00019 Petunia axillaris HOM05D003470 ORTHO05D004157 3.5e-54 218.0 491 35.4
ECA233G4972 Erigeron canadensis HOM05D003470 ORTHO05D004157 4.6e-54 217.6 702 30.8
HanXRQChr08g0218281 Helianthus annuus HOM05D003470 ORTHO05D004157 1.0e-53 216.5 693 30.9
FAN14G5641 Fragaria x ananassa HOM05D003470 ORTHO05D004157 1.3e-53 216.1 926 27.9
MELO3C009401.2 Cucumis melo HOM05D003470 ORTHO05D004157 6.7e-53 213.8 1010 27.0
Rhsim03G0111500 Rhododendron simsii HOM05D003470 ORTHO05D004157 8.7e-53 213.4 1098 29.0
Rhsim03G0087000 Rhododendron simsii HOM05D003470 ORTHO05D004157 1.1e-52 213.0 517 36.2
ATR0043G047 Amborella trichopoda HOM05D003470 ORTHO05D004157 5.7e-52 210.7 642 29.4
FAN09G0366 Fragaria x ananassa HOM05D003470 ORTHO05D004157 5.7e-52 210.7 991 27.2
HanXRQChr14g0456131 Helianthus annuus HOM05D003470 ORTHO05D004157 9.6e-52 209.9 1028 26.9
CANSAT78G0551 Cannabis sativa HOM05D003470 ORTHO05D004157 1.3e-51 209.5 864 28.6
CDE03G0074 Ceratophyllum demersum HOM05D003470 ORTHO05D004157 1.3e-51 209.5 644 30.4
Hund06764 Selenicereus undatus HOM05D003470 ORTHO05D004157 1.3e-51 209.5 897 28.2
Cpa.g.sc53.171 Carica papaya HOM05D003470 ORTHO05D004157 2.1e-51 208.8 981 28.2
PSO478G4813 Papaver somniferum HOM05D003470 ORTHO05D004157 3.7e-51 208.0 373 41.3
CsaV3_3G036530 Cucumis sativus L. HOM05D003470 ORTHO05D004157 4.8e-51 207.6 1110 26.2
Potri.006G120400 Populus trichocarpa HOM05D003470 ORTHO05D004157 1.4e-50 206.1 986 27.3
Atru.chr12.915 Acer truncatum HOM05D003470 ORTHO05D004157 1.5e-49 202.6 269 50.9
Gohir.A09G143900 Gossypium hirsutum HOM05D003470 ORTHO05D004157 1.5e-49 202.6 742 29.6
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 2.6e-49 201.8 1033 26.5
Zm00001eb000590 Zea mays HOM05D003470 ORTHO05D004157 4.5e-49 201.1 434 34.8
Glyma.10G062800 Glycine max HOM05D003470 ORTHO05D004157 1.0e-48 199.9 997 26.8
Actinidia28929 Actinidia chinensis HOM05D003470 ORTHO05D004157 3.8e-48 198.0 352 39.5
SalBow3G0781 Salvia bowleyana HOM05D003470 ORTHO05D004157 4.2e-47 194.5 439 34.6
Nitab4.5_0003906g0030 Nicotiana tabacum HOM05D003470 ORTHO05D004157 1.6e-46 192.6 552 30.8
Zm00001eb391920 Zea mays HOM05D003470 ORTHO05D004157 2.7e-46 191.8 835 27.2
Phvul.007G226600 Phaseolus vulgaris HOM05D003470 ORTHO05D004157 5.1e-45 187.6 1010 25.5
Oeu026700.1 Olea europaea HOM05D003470 ORTHO05D004157 8.7e-45 186.8 1058 26.5
MSTRG.19203 Avicennia marina HOM05D003470 ORTHO05D004157 3.3e-44 184.9 610 29.2
vmacro07200 Vaccinium macrocarpon HOM05D003470 ORTHO05D004157 3.3e-44 184.9 1096 28.4
Lsat_1_v5_gn_6_28040 Lactuca sativa HOM05D003470 ORTHO05D004157 4.3e-44 184.5 526 30.4
Dinv31268 Davidia involucrata HOM05D003470 ORTHO05D004157 4.8e-43 181.0 884 28.6
Peaxi162Scf00138g00213 Petunia axillaris HOM05D003470 ORTHO05D004157 2.6e-41 175.3 839 28.5
HPP92_008497 Vanilla planifolia HOM05D003470 ORTHO05D004157 3.8e-40 171.4 774 26.5
ECA233G0686 Erigeron canadensis HOM05D003470 ORTHO05D004157 1.9e-39 169.1 539 30.1
Lj3C994T12 Lonicera japonica HOM05D003470 ORTHO05D004157 2.3e-37 162.2 635 28.3
Solyc09g008530.3 Solanum lycopersicum HOM05D003470 ORTHO05D004157 5.1e-37 161.0 1036 25.0
Gorai.006G160300 Gossypium raimondii HOM05D003470 ORTHO05D004157 8.8e-37 160.2 807 27.1
Sopen09g003360 Solanum pennellii HOM05D003470 ORTHO05D004157 8.8e-37 160.2 1055 24.6
Medtr1g062200 Medicago truncatula HOM05D003470 ORTHO05D004157 6.3e-35 154.1 719 28.5
Glyma.13G147300 Glycine max HOM05D003470 ORTHO05D004157 3.1e-34 151.8 1039 24.5
Lj5g0020068 Lotus japonicus HOM05D003470 ORTHO05D004157 6.9e-34 150.6 1040 24.5
Ca_11537_v3 Cicer arietinum L. HOM05D003470 ORTHO05D004157 9.1e-34 150.2 1020 23.5
PGSC0003DMG400003903 Solanum tuberosum HOM05D003470 ORTHO05D004157 8.5e-32 143.7 1047 24.3
TPR.G22446 Trifolium pratense HOM05D003470 ORTHO05D004157 1.1e-31 143.3 951 23.8
Cc06_g04710 Coffea canephora HOM05D003470 ORTHO05D004157 1.6e-30 139.4 1036 26.0
Gohir.D09G139850 Gossypium hirsutum HOM05D003470 ORTHO05D004157 1.6e-30 139.4 291 35.4
Duzib128G1410 Durio zibethinus HOM05D003470 ORTHO05D022439 2.6e-28 132.1 362 33.7
AUR62019445 Chenopodium quinoa HOM05D002464 ORTHO05D002530 4.4e-28 131.3 195 42.6
Migut.J00469 Erythranthe guttata HOM05D003470 ORTHO05D004157 3.7e-27 128.3 421 30.2
Thecc.10G089600 Theobroma cacao HOM05D003470 ORTHO05D022439 3.7e-27 128.3 372 34.9
arahy.Tifrunner.gnm1.ann1.8W3QW7 Arachis hypogaea HOM05D003470 ORTHO05D004157 7.0e-26 124.0 867 23.4
arahy.Tifrunner.gnm1.ann1.FKX1H2 Arachis hypogaea HOM05D003470 ORTHO05D004157 7.0e-26 124.0 867 23.4
HanXRQChr13g0400491 Helianthus annuus HOM05D003470 ORTHO05D004157 1.2e-25 123.2 915 23.6
CAN.G1038.4 Capsicum annuum HOM05D003470 ORTHO05D004157 1.6e-25 122.9 858 25.1
COL.COLO4_32886 Corchorus olitorius HOM05D003470 ORTHO05D022439 1.6e-25 122.9 192 41.7
Gohir.D10G208200 Gossypium hirsutum HOM05D003470 ORTHO05D022439 1.6e-25 122.9 406 31.3
COL.COLO4_22242 Corchorus olitorius HOM05D003470 ORTHO05D004157 4.5e-25 121.3 267 34.1
Gorai.011G233900 Gossypium raimondii HOM05D003470 ORTHO05D022439 1.0e-24 120.2 406 31.0
Gohir.A10G200300 Gossypium hirsutum HOM05D003470 ORTHO05D022439 2.9e-24 118.6 408 30.9
SEGI_27097 Sequoiadendron giganteum HOM05D003470 ORTHO05D004157 1.9e-23 115.9 1031 22.8
SalBow6G0046 Salvia bowleyana HOM05D003470 ORTHO05D004157 4.2e-23 114.8 789 23.6
Os10g0547000 Oryza sativa ssp. japonica HOM05D003470 ORTHO05D004157 7.2e-23 114.0 437 27.9
ClCG10G019700 Citrullus lanatus HOM05D003470 ORTHO05D004157 2.1e-22 112.5 1079 23.2
Ca_11528_v3 Cicer arietinum L. HOM05D003470 ORTHO05D004157 8.0e-22 110.5 808 25.2
Atru.chr12.916 Acer truncatum HOM05D003470 ORTHO05D004157 1.4e-21 109.8 259 33.6
CDE02G3590 Ceratophyllum demersum HOM05D003470 ORTHO05D004157 1.8e-21 109.4 332 31.0
Eucgr.A01602 Eucalyptus grandis HOM05D003470 ORTHO05D004157 1.8e-21 109.4 971 22.3
arahy.Tifrunner.gnm1.ann1.08YI9Q Arachis hypogaea HOM05D003470 ORTHO05D004157 8.8e-21 107.1 440 26.4
vmacro07330 Vaccinium macrocarpon HOM05D003470 ORTHO05D004157 2.8e-19 102.1 699 26.3
VMungo0720G2647 Vigna mungo HOM05D003470 ORTHO05D000001 1.8e-18 99.4 853 23.6
Sed0013053 Sechium edule HOM05D003470 ORTHO05D004157 2.0e-17 95.9 902 23.5
Actinidia28930 Actinidia chinensis HOM05D003470 ORTHO05D004157 2.7e-17 95.5 663 25.3
CDE02G1862 Ceratophyllum demersum HOM05D003470 ORTHO05D004157 3.5e-17 95.1 191 35.1
AagrBONN_evm.TU.Sc2ySwM_344.3028 Anthoceros agrestis HOM05D003470 ORTHO05D004157 1.0e-16 93.6 979 24.1
unitig_27.g25387 Utricularia gibba HOM05D003470 ORTHO05D004157 3.2e-15 88.6 346 26.9
Sed0006633 Sechium edule HOM05D003470 ORTHO05D004157 1.2e-14 86.7 896 22.5
Psat6g076760 Pisum sativum HOM05D003470 ORTHO05D004157 4.0e-13 81.6 807 23.0
Lj3A935T49 Lonicera japonica HOM05D003470 ORTHO05D004157 1.6e-09 69.7 218 31.7
HanXRQChr07g0186251 Helianthus annuus HOM05D003470 ORTHO05D004157 3.2e-07 62.0 278 25.5


User provided reference genes

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