Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16760 Corylus avellana HOM05D002307 ORTHO05D002378 4.1e-52 208.0 120 100.0
Cfa001785 Carpinus fangiana HOM05D002307 ORTHO05D002378 3.7e-37 158.3 215 52.6
QL08p053335 Quercus lobata HOM05D002307 ORTHO05D002378 9.7e-30 133.7 228 38.6
CiPaw.02G170800 Carya illinoinensis HOM05D002307 ORTHO05D002378 2.8e-29 132.1 200 47.5
CiPaw.01G266500 Carya illinoinensis HOM05D002307 ORTHO05D002378 2.4e-28 129.0 202 45.5
Thecc.10G087300 Theobroma cacao HOM05D002307 ORTHO05D002378 1.1e-25 120.2 220 36.8
Lj5g0022127 Lotus japonicus HOM05D002307 ORTHO05D002378 3.0e-23 112.1 198 42.9
Cpa.g.sc53.154 Carica papaya HOM05D002307 ORTHO05D002378 5.2e-23 111.3 217 41.0
Dinv31246 Davidia involucrata HOM05D002307 ORTHO05D002378 5.2e-23 111.3 204 40.7
Rhsim03G0112500 Rhododendron simsii HOM05D002307 ORTHO05D002378 6.7e-23 110.9 200 37.0
RhsimUnG0033000 Rhododendron simsii HOM05D002307 ORTHO05D002378 8.8e-23 110.5 200 37.0
Duzib114G0495 Durio zibethinus HOM05D002307 ORTHO05D002378 1.2e-22 110.2 228 33.8
Psat6g172320 Pisum sativum HOM05D002307 ORTHO05D002378 1.2e-22 110.2 178 37.6
RcHm_v2.0_Chr1g0362191 Rosa chinensis HOM05D002307 ORTHO05D002378 1.5e-22 109.8 211 41.2
Duzib106G1267 Durio zibethinus HOM05D002307 ORTHO05D002378 2.0e-22 109.4 221 34.8
Medtr1g090663 Medicago truncatula HOM05D002307 ORTHO05D002378 2.0e-22 109.4 177 46.3
MD01G1100200 Malus domestica HOM05D002307 ORTHO05D002378 4.4e-22 108.2 198 43.4
TPR.G37772 Trifolium pratense HOM05D002307 ORTHO05D002378 5.7e-22 107.8 179 45.3
FvH4_7g18380 Fragaria vesca HOM05D002307 ORTHO05D002378 9.7e-22 107.1 205 42.4
FAN06G2797 Fragaria x ananassa HOM05D002307 ORTHO05D002378 9.7e-22 107.1 205 42.4
FAN06G4622 Fragaria x ananassa HOM05D002307 ORTHO05D002378 9.7e-22 107.1 205 42.4
FAN10G3682 Fragaria x ananassa HOM05D002307 ORTHO05D002378 1.7e-21 106.3 206 41.7
Gohir.D10G208601 Gossypium hirsutum HOM05D002307 ORTHO05D002378 2.8e-21 105.5 201 33.8
Gorai.011G234500 Gossypium raimondii HOM05D002307 ORTHO05D002378 2.8e-21 105.5 201 33.8
Atru.chr12.882 Acer truncatum HOM05D002307 ORTHO05D002378 1.1e-20 103.6 218 40.4
Gohir.A10G200900 Gossypium hirsutum HOM05D002307 ORTHO05D002378 1.4e-20 103.2 201 33.3
Prupe.2G205900 Prunus persica HOM05D002307 ORTHO05D002378 1.4e-20 103.2 209 41.6
Actinidia06731 Actinidia chinensis HOM05D002307 ORTHO05D002378 2.4e-20 102.4 188 41.0
FAN03G3366 Fragaria x ananassa HOM05D002307 ORTHO05D002378 3.1e-20 102.1 206 40.8
Lalb_Chr02g0151011 Lupinus albus HOM05D002307 ORTHO05D002378 3.1e-20 102.1 206 40.3
FAN10G1030 Fragaria x ananassa HOM05D002307 ORTHO05D002378 4.1e-20 101.7 206 40.8
MD07G1167100 Malus domestica HOM05D002307 ORTHO05D002378 4.1e-20 101.7 204 41.2
FAN01G3055 Fragaria x ananassa HOM05D002307 ORTHO05D002378 5.3e-20 101.3 206 41.3
Glyma.10G196500 Glycine max HOM05D002307 ORTHO05D002378 5.3e-20 101.3 212 39.2
Ciclev10032527m.g Citrus clementina HOM05D002307 ORTHO05D002378 7.0e-20 100.9 214 39.3
Glyma.20G193700 Glycine max HOM05D002307 ORTHO05D002378 3.5e-19 98.6 213 39.0
Ca_10436_v3 Cicer arietinum L. HOM05D002307 ORTHO05D002378 7.7e-19 97.4 202 40.6
vmacro07190 Vaccinium macrocarpon HOM05D002307 ORTHO05D002378 1.7e-18 96.3 199 34.7
Phvul.007G139200 Phaseolus vulgaris HOM05D002307 ORTHO05D002378 2.2e-18 95.9 214 38.3
Potri.008G032500 Populus trichocarpa HOM05D002307 ORTHO05D002378 2.2e-18 95.9 221 37.6
Oeu051654.1 Olea europaea HOM05D002307 ORTHO05D002378 2.9e-18 95.5 199 34.2
Potri.010G229200 Populus trichocarpa HOM05D002307 ORTHO05D002378 3.8e-18 95.1 218 39.0
CSS0003217 Camellia sinensis var. sinensis HOM05D002307 ORTHO05D002378 5.0e-18 94.7 193 38.9
CAN.G459.29 Capsicum annuum HOM05D002307 ORTHO05D002378 2.5e-17 92.4 226 34.5
Sopen11g003930 Solanum pennellii HOM05D002307 ORTHO05D002378 2.5e-17 92.4 230 36.1
Peaxi162Scf00982g00017 Petunia axillaris HOM05D002307 ORTHO05D002378 4.2e-17 91.7 180 35.6
Solyc11g008080.3 Solanum lycopersicum HOM05D002307 ORTHO05D002378 5.5e-17 91.3 233 35.6
Cc02_g10710 Coffea canephora HOM05D002307 ORTHO05D002378 7.2e-17 90.9 221 29.9
Lj2C22T11 Lonicera japonica HOM05D002307 ORTHO05D002378 7.2e-17 90.9 201 32.8
PGSC0003DMG400031075 Solanum tuberosum HOM05D002307 ORTHO05D002378 7.2e-17 90.9 229 35.8
arahy.Tifrunner.gnm1.ann1.RI8FGC Arachis hypogaea HOM05D002307 ORTHO05D002378 9.4e-17 90.5 185 41.1
Migut.F01942 Erythranthe guttata HOM05D002307 ORTHO05D002378 9.4e-17 90.5 192 37.5
VMungo0720G2779 Vigna mungo HOM05D002307 ORTHO05D002378 9.4e-17 90.5 217 35.9
Dinv36374 Davidia involucrata HOM05D002307 ORTHO05D002378 1.6e-16 89.7 205 39.0
Manes.10G051600 Manihot esculenta HOM05D002307 ORTHO05D002378 1.6e-16 89.7 215 32.6
COL.COLO4_09862 Corchorus olitorius HOM05D002307 ORTHO05D002378 2.1e-16 89.4 188 34.0
Nitab4.5_0002285g0030 Nicotiana tabacum HOM05D002307 ORTHO05D002378 2.1e-16 89.4 228 35.5
Nitab4.5_0004987g0040 Nicotiana tabacum HOM05D002307 ORTHO05D002378 2.7e-16 89.0 229 35.4
arahy.Tifrunner.gnm1.ann1.130PY3 Arachis hypogaea HOM05D002307 ORTHO05D002378 8.0e-16 87.4 184 41.8
CSS0033229 Camellia sinensis var. sinensis HOM05D002307 ORTHO05D002378 1.8e-15 86.3 222 36.0
Hma1.2p1_0117F.1_g056380 Hydrangea macrophylla HOM05D002307 ORTHO05D002378 4.0e-15 85.1 204 36.8
Hma1.2p1_2599F.1_g325170 Hydrangea macrophylla HOM05D002307 ORTHO05D002378 4.0e-15 85.1 204 36.8
HanXRQChr09g0253931 Helianthus annuus HOM05D002307 ORTHO05D002378 6.8e-15 84.3 187 41.2
CSS0018989 Camellia sinensis var. sinensis HOM05D002307 ORTHO05D002378 8.8e-15 84.0 173 35.3
TWI38G0139 Tripterygium wilfordii HOM05D002307 ORTHO05D002378 1.2e-14 83.6 203 38.4
Manes.07G094900 Manihot esculenta HOM05D002307 ORTHO05D002378 2.6e-14 82.4 229 36.2
Sabra08G0021400 Salix brachista HOM05D002307 ORTHO05D002378 2.6e-14 82.4 221 36.2
MSTRG.27494 Avicennia marina HOM05D002307 ORTHO05D002378 7.5e-14 80.9 215 33.5
Lsat_1_v5_gn_9_71481 Lactuca sativa HOM05D002307 ORTHO05D002378 9.8e-14 80.5 214 37.4
Eucgr.G02747 Eucalyptus grandis HOM05D002307 ORTHO05D002378 1.3e-13 80.1 67 56.7
HanXRQChr10g0304431 Helianthus annuus HOM05D002307 ORTHO05D002378 1.4e-12 76.6 214 36.9
PGR142G1473 Punica granatum HOM05D002307 ORTHO05D002378 1.4e-12 76.6 174 40.2
CANSAT56G3556 Cannabis sativa HOM05D002307 ORTHO05D002378 2.4e-12 75.9 226 34.5
HanXRQChr09g0248621 Helianthus annuus HOM05D002307 ORTHO05D002378 2.4e-12 75.9 209 36.8
Ah.11g044750 Amaranthus hybridus HOM05D002307 ORTHO05D002378 3.1e-12 75.5 173 41.0
Sed0014202 Sechium edule HOM05D002307 ORTHO05D002378 5.4e-12 74.7 158 32.3
MELO3C019842.2 Cucumis melo HOM05D002307 ORTHO05D002378 7.0e-12 74.3 219 34.2
Oeu010019.1 Olea europaea HOM05D002307 ORTHO05D002378 9.1e-12 73.9 57 82.5
TAR369G0156 Trochodendron aralioides HOM05D002307 ORTHO05D002378 9.1e-12 73.9 169 40.8
GSVIVG01016212001 Vitis vinifera HOM05D002307 ORTHO05D002378 1.2e-11 73.6 163 34.4
Glyma.03G064100 Glycine max HOM05D002307 ORTHO05D002378 2.0e-11 72.8 69 55.1
THA.LOC104826385 Tarenaya hassleriana HOM05D002307 ORTHO05D002378 4.5e-11 71.6 201 33.8
ClCG08G007870 Citrullus lanatus HOM05D002307 ORTHO05D002378 5.9e-11 71.2 244 31.1
THA.LOC104800578 Tarenaya hassleriana HOM05D002307 ORTHO05D002378 7.7e-11 70.9 70 70.0
Hund19459 Selenicereus undatus HOM05D002307 ORTHO05D002378 1.0e-10 70.5 202 35.6
Aqoxy2G01674 Aquilegia oxysepala HOM05D002307 ORTHO05D002378 1.7e-10 69.7 205 33.7
Lalb_Chr24g0394911 Lupinus albus HOM05D002307 ORTHO05D002378 5.0e-10 68.2 189 33.3
Aqoxy1G01109 Aquilegia oxysepala HOM05D002307 ORTHO05D002378 6.6e-10 67.8 199 35.7
SalBow4G0176 Salvia bowleyana HOM05D002307 ORTHO05D002378 6.6e-10 67.8 212 32.1
TPR.G5656 Trifolium pratense HOM05D002307 ORTHO05D002378 6.6e-10 67.8 82 62.2
AUR62029177 Chenopodium quinoa HOM05D002307 ORTHO05D002378 8.6e-10 67.4 168 37.5
ECA232G4966 Erigeron canadensis HOM05D002307 ORTHO05D002378 1.1e-09 67.0 65 75.4
Gohir.D03G139200 Gossypium hirsutum HOM05D002307 ORTHO05D002378 1.5e-09 66.6 185 34.1
Gorai.003G145900 Gossypium raimondii HOM05D002307 ORTHO05D002378 1.5e-09 66.6 185 34.1
Glyma.12G178200 Glycine max HOM05D002307 ORTHO05D002378 1.9e-09 66.2 199 33.7
Sed0007477 Sechium edule HOM05D002307 ORTHO05D002378 1.9e-09 66.2 220 27.7
DCAR_006398 Daucus carota HOM05D002307 ORTHO05D002378 2.5e-09 65.9 67 73.1
TAR633G1307 Trochodendron aralioides HOM05D002307 ORTHO05D002378 2.5e-09 65.9 181 38.1
PGR119G1574 Punica granatum HOM05D002307 ORTHO05D002378 4.2e-09 65.1 208 32.2
Carub.0005s1068 Capsella rubella HOM05D002307 ORTHO05D002378 9.5e-09 63.9 56 78.6
PSO063G4804 Papaver somniferum HOM05D002307 ORTHO05D002378 9.5e-09 63.9 195 33.8
Aa31LG1G12800 Aethionema arabicum HOM05D002307 ORTHO05D002378 1.2e-08 63.5 59 76.3
Duzib168G1056 Durio zibethinus HOM05D002307 ORTHO05D002378 1.2e-08 63.5 63 73.0
Thhalv10017900m.g Eutrema salsugineum HOM05D002307 ORTHO05D002378 1.2e-08 63.5 158 38.6
Phvul.005G130700 Phaseolus vulgaris HOM05D002307 ORTHO05D002378 1.2e-08 63.5 209 32.5
Sed0027582 Sechium edule HOM05D002307 ORTHO05D002378 1.2e-08 63.5 213 27.7
Ah.10g034430 Amaranthus hybridus HOM05D002307 ORTHO05D002378 1.6e-08 63.2 55 81.8
Ciclev10029012m.g Citrus clementina HOM05D002307 ORTHO05D002378 1.6e-08 63.2 61 75.4
EL10Ac2g03893 Beta vulgaris HOM05D002307 ORTHO05D002378 2.1e-08 62.8 56 80.4
PSO339G6240 Papaver somniferum HOM05D002307 ORTHO05D002378 2.8e-08 62.4 198 33.3
Ca_01709_v3 Cicer arietinum L. HOM05D002307 ORTHO05D002378 3.6e-08 62.0 180 36.7
QL01p015252 Quercus lobata HOM05D002307 ORTHO05D002378 3.6e-08 62.0 62 72.6
VMungo1127G0698 Vigna mungo HOM05D002307 ORTHO05D002378 3.6e-08 62.0 73 63.0
Aa31LG5G8000 Aethionema arabicum HOM05D002307 ORTHO05D002378 4.7e-08 61.6 161 36.6
Sc09g0005930 Simmondsia chinensis HOM05D002307 ORTHO05D002378 4.7e-08 61.6 194 34.0
CsaV3_2G021050 Cucumis sativus L. HOM05D002307 ORTHO05D002378 6.1e-08 61.2 201 34.3
FAN16G1458 Fragaria x ananassa HOM05D002307 ORTHO05D002378 6.1e-08 61.2 218 32.1
Phvul.011G085800 Phaseolus vulgaris HOM05D002307 ORTHO05D002378 6.1e-08 61.2 70 64.3
Aa31LG4G14170 Aethionema arabicum HOM05D002307 ORTHO05D002378 8.0e-08 60.8 63 66.7
AT2G28140 Arabidopsis thaliana HOM05D002307 ORTHO05D002378 8.0e-08 60.8 159 30.8
CARHR120990 Cardamine hirsuta HOM05D002307 ORTHO05D002378 8.0e-08 60.8 172 32.0
Eucgr.B03932 Eucalyptus grandis HOM05D002307 ORTHO05D002378 8.0e-08 60.8 225 31.1
SGA_v2.0_scaffold62G21376 Striga asiatica HOM05D002307 ORTHO05D002378 8.0e-08 60.8 56 50.0
CANSAT54G0062 Cannabis sativa HOM05D002307 ORTHO05D002378 1.0e-07 60.5 61 73.8
Carub.0004s0894 Capsella rubella HOM05D002307 ORTHO05D002378 1.0e-07 60.5 159 31.4
Dinv16216 Davidia involucrata HOM05D002307 ORTHO05D002378 1.0e-07 60.5 188 35.1
Manes.04G013500 Manihot esculenta HOM05D002307 ORTHO05D002378 1.0e-07 60.5 55 76.4
VMungo1080G1897 Vigna mungo HOM05D002307 ORTHO05D002378 1.0e-07 60.5 118 43.2
Lj3P937T88 Lonicera japonica HOM05D002307 ORTHO05D002378 1.4e-07 60.1 71 63.4
Nn6g35238 Nelumbo nucifera HOM05D002307 ORTHO05D002378 1.4e-07 60.1 62 69.4
EL10Ac9g22612 Beta vulgaris HOM05D002307 ORTHO05D002378 1.8e-07 59.7 224 33.0
AL5G23410 Arabidopsis lyrata HOM05D002307 ORTHO05D002378 2.3e-07 59.3 53 79.2
AT3G44940 Arabidopsis thaliana HOM05D002307 ORTHO05D002378 2.3e-07 59.3 56 75.0
BcaC09g49668 Brassica carinata HOM05D002307 ORTHO05D002378 2.3e-07 59.3 67 64.2
C01p34050 Brassica napus HOM05D002307 ORTHO05D002378 2.3e-07 59.3 67 64.2
BolC1t03375H Brassica oleracea HOM05D002307 ORTHO05D002378 2.3e-07 59.3 67 64.2
COL.COLO4_11105 Corchorus olitorius HOM05D002307 ORTHO05D002378 2.3e-07 59.3 58 74.1
PSO801G0220 Papaver somniferum HOM05D002307 ORTHO05D002378 2.3e-07 59.3 201 35.8
Sp4g10950 Schrenkiella parvula HOM05D002307 ORTHO05D002378 2.3e-07 59.3 162 29.0
AL4G22010 Arabidopsis lyrata HOM05D002307 ORTHO05D002378 3.0e-07 58.9 55 54.5
Medtr2g084270 Medicago truncatula HOM05D002307 ORTHO05D002378 3.0e-07 58.9 184 34.2
A03p10950 Brassica napus HOM05D002307 ORTHO05D002378 4.0e-07 58.5 56 75.0
Gohir.A08G200800 Gossypium hirsutum HOM05D002307 ORTHO05D002378 4.0e-07 58.5 186 34.4
BcaB01g04687 Brassica carinata HOM05D002307 ORTHO05D002378 5.2e-07 58.2 56 73.2
MBI13_g33238_MAGBIO Magnolia biondii HOM05D002307 ORTHO05D002378 5.2e-07 58.2 187 35.3
BcaB08g36392 Brassica carinata HOM05D002307 ORTHO05D002378 6.8e-07 57.8 56 71.4
BcaC01g06562 Brassica carinata HOM05D002307 ORTHO05D002378 6.8e-07 57.8 56 73.2
C03p12610 Brassica napus HOM05D002307 ORTHO05D002378 6.8e-07 57.8 56 73.2
BolC3t13729H Brassica oleracea HOM05D002307 ORTHO05D002378 6.8e-07 57.8 56 73.2
BraA03t10405Z Brassica rapa HOM05D002307 ORTHO05D002378 6.8e-07 57.8 72 63.9
MELO3C004975.2 Cucumis melo HOM05D002307 ORTHO05D002378 6.8e-07 57.8 184 33.2
THA.LOC104810881 Tarenaya hassleriana HOM05D002307 ORTHO05D002378 6.8e-07 57.8 56 73.2
CARHR151020 Cardamine hirsuta HOM05D002307 ORTHO05D002378 8.9e-07 57.4 56 69.6
Thhalv10002925m.g Eutrema salsugineum HOM05D002307 ORTHO05D002378 8.9e-07 57.4 62 67.7
Sp5g16290 Schrenkiella parvula HOM05D002307 ORTHO05D002378 1.2e-06 57.0 56 73.2
A01p26700 Brassica napus HOM05D002307 ORTHO05D002378 1.5e-06 56.6 67 61.2
BraA01t02600Z Brassica rapa HOM05D002307 ORTHO05D002378 1.5e-06 56.6 67 61.2
THA.LOC104799521 Tarenaya hassleriana HOM05D002307 ORTHO05D002378 1.5e-06 56.6 57 73.7
Thecc.09G350500 Theobroma cacao HOM05D002307 ORTHO05D002378 1.5e-06 56.6 63 69.8
SHI08831 Sapria himalayana HOM05D002307 ORTHO05D002378 2.6e-06 55.8 65 44.6
Hund01432 Selenicereus undatus HOM05D002307 ORTHO05D002378 2.6e-06 55.8 73 45.2
Hund03343 Selenicereus undatus HOM05D002307 ORTHO05D002378 2.6e-06 55.8 60 70.0
Oeu040436.1 Olea europaea HOM05D002307 ORTHO05D002378 3.4e-06 55.5 64 65.6
TAR623G0873 Trochodendron aralioides HOM05D002307 ORTHO05D002378 3.4e-06 55.5 68 47.1
MBI14_g29800_MAGBIO Magnolia biondii HOM05D002619 ORTHO05D002804 4.4e-06 55.1 59 71.2
MBI14_g44426_MAGBIO Magnolia biondii HOM05D002619 ORTHO05D002804 4.4e-06 55.1 59 71.2
PSO339G1252 Papaver somniferum HOM05D002307 ORTHO05D002378 4.4e-06 55.1 192 34.9
TWI79G0763 Tripterygium wilfordii HOM05D002307 ORTHO05D002378 4.4e-06 55.1 67 47.8
TWI79G0943 Tripterygium wilfordii HOM05D002307 ORTHO05D002378 4.4e-06 55.1 67 47.8
BcaC02g10948 Brassica carinata HOM05D002307 ORTHO05D002378 5.7e-06 54.7 159 29.6
C04p23370 Brassica napus HOM05D002307 ORTHO05D002378 5.7e-06 54.7 159 29.6
arahy.Tifrunner.gnm1.ann1.Z34153 Arachis hypogaea HOM05D002307 ORTHO05D002378 7.5e-06 54.3 55 72.7
HPP92_022599 Vanilla planifolia HOM05D002307 ORTHO05D002378 7.5e-06 54.3 69 62.3
Duzib170G0428 Durio zibethinus HOM05D002307 ORTHO05D002378 9.8e-06 53.9 68 48.5
SGA_v2.0_scaffold45G16970 Striga asiatica HOM05D002307 ORTHO05D002378 9.8e-06 53.9 146 37.7


User provided reference genes

Program Settings