Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16738 Corylus avellana HOM05D006684 ORTHO05D008443 1.6e-71 272.7 141 100.0
Cfa010232 Carpinus fangiana HOM05D006684 ORTHO05D008443 2.3e-62 242.3 141 89.4
CiPaw.01G260000 Carya illinoinensis HOM05D006684 ORTHO05D008443 1.9e-37 159.5 142 67.6
CSS0020305 Camellia sinensis var. sinensis HOM05D006684 ORTHO05D008443 5.3e-27 124.8 150 49.3
QL08p051764 Quercus lobata HOM05D006684 ORTHO05D008443 1.2e-26 123.6 149 52.3
GSVIVG01027546001 Vitis vinifera HOM05D006684 ORTHO05D008443 2.6e-26 122.5 154 51.9
Ciclev10022036m.g Citrus clementina HOM05D006684 ORTHO05D008443 1.0e-25 120.6 156 50.0
Actinidia33456 Actinidia chinensis HOM05D006684 ORTHO05D008443 1.7e-25 119.8 141 48.2
Atru.chr5.338 Acer truncatum HOM05D006684 ORTHO05D008443 2.9e-25 119.0 144 51.4
Gohir.D11G086900 Gossypium hirsutum HOM05D006684 ORTHO05D008443 1.9e-24 116.3 127 54.3
Gorai.007G092800 Gossypium raimondii HOM05D006684 ORTHO05D008443 1.9e-24 116.3 127 54.3
TAR636G0929 Trochodendron aralioides HOM05D006684 ORTHO05D008443 1.9e-24 116.3 151 49.0
Dinv32395 Davidia involucrata HOM05D006684 ORTHO05D008443 4.2e-24 115.2 158 50.0
MBI12_g38018_MAGBIO Magnolia biondii HOM05D006684 ORTHO05D008443 5.5e-24 114.8 153 49.0
MELO3C022508.2 Cucumis melo HOM05D006684 ORTHO05D008443 2.7e-23 112.5 149 50.3
Gohir.A11G082800 Gossypium hirsutum HOM05D006684 ORTHO05D008443 4.6e-23 111.7 127 52.0
Sed0022399 Sechium edule HOM05D006684 ORTHO05D008443 6.7e-22 107.8 153 49.7
Cpa.g.sc18.149 Carica papaya HOM05D006684 ORTHO05D008443 1.1e-21 107.1 153 49.7
Manes.05G043400 Manihot esculenta HOM05D006684 ORTHO05D008443 3.3e-21 105.5 136 54.4
TWI59G0969 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 1.7e-20 103.2 140 48.6
Manes.12G048300 Manihot esculenta HOM05D006684 ORTHO05D008443 2.8e-20 102.4 140 50.0
COL.COLO4_12585 Corchorus olitorius HOM05D006684 ORTHO05D008443 3.7e-20 102.1 129 50.4
Aqoxy7G00540 Aquilegia oxysepala HOM05D006684 ORTHO05D008443 4.8e-20 101.7 155 45.2
PGR042G1390 Punica granatum HOM05D006684 ORTHO05D008443 1.2e-18 97.1 138 45.7
Thecc.01G373000 Theobroma cacao HOM05D006684 ORTHO05D008443 1.5e-18 96.7 113 52.2
Eucgr.E01357 Eucalyptus grandis HOM05D006684 ORTHO05D008443 3.4e-18 95.5 152 45.4
Phvul.008G074700 Phaseolus vulgaris HOM05D006684 ORTHO05D008443 5.9e-18 94.7 141 43.3
Prupe.2G148900 Prunus persica HOM05D006684 ORTHO05D008443 5.9e-18 94.7 149 45.6
SalBow5G0966 Salvia bowleyana HOM05D006684 ORTHO05D008443 7.7e-18 94.4 139 46.8
SalBow5G5079 Salvia bowleyana HOM05D006684 ORTHO05D008443 1.0e-17 94.0 133 48.1
Sopen05g028070 Solanum pennellii HOM05D006684 ORTHO05D008443 1.3e-17 93.6 150 40.7
VMungo1383G3715 Vigna mungo HOM05D006684 ORTHO05D008443 1.3e-17 93.6 145 43.4
Glyma.09G267200 Glycine max HOM05D006684 ORTHO05D008443 2.9e-17 92.4 146 45.2
ClCG06G000300 Citrullus lanatus HOM05D006684 ORTHO05D008443 8.5e-17 90.9 150 46.0
PGSC0003DMG400021635 Solanum tuberosum HOM05D006684 ORTHO05D008443 1.1e-16 90.5 143 40.6
LjContig00136g0018410 Lotus japonicus HOM05D006684 ORTHO05D008443 1.4e-16 90.1 143 45.5
Cc02_g36430 Coffea canephora HOM05D006684 ORTHO05D008443 1.9e-16 89.7 148 46.6
THA.LOC104801995 Tarenaya hassleriana HOM05D006684 ORTHO05D008443 2.5e-16 89.4 138 43.5
Nitab4.5_0010110g0010 Nicotiana tabacum HOM05D006684 ORTHO05D008443 1.6e-15 86.7 139 41.0
C04p71620 Brassica napus HOM05D000147 ORTHO05D007841 2.1e-15 86.3 150 40.7
BolC4t28667H Brassica oleracea HOM05D000147 ORTHO05D007841 3.6e-15 85.5 154 39.6
Medtr7g075640 Medicago truncatula HOM05D006684 ORTHO05D008443 3.6e-15 85.5 138 42.0
PSO478G1842 Papaver somniferum HOM05D006684 ORTHO05D008443 6.1e-15 84.7 160 40.0
MSTRG.4882 Avicennia marina HOM05D006684 ORTHO05D008443 1.0e-14 84.0 132 43.2
BraA04t18849Z Brassica rapa HOM05D000147 ORTHO05D007841 1.4e-14 83.6 154 39.6
CANSAT94G0012 Cannabis sativa HOM05D006684 ORTHO05D008443 1.8e-14 83.2 148 45.3
BcaB06g29418 Brassica carinata HOM05D006684 ORTHO05D008443 2.3e-14 82.8 154 40.3
CsaV3_6G006090 Cucumis sativus L. HOM05D006684 ORTHO05D008443 3.0e-14 82.4 148 43.2
Sp4g27550 Schrenkiella parvula HOM05D006684 ORTHO05D008443 3.9e-14 82.0 151 40.4
arahy.Tifrunner.gnm1.ann1.3Z62KU Arachis hypogaea HOM05D006684 ORTHO05D008443 5.2e-14 81.6 147 43.5
Manes.12G048301 Manihot esculenta HOM05D006684 ORTHO05D008443 5.2e-14 81.6 59 72.9
Manes.12G053501 Manihot esculenta HOM05D006684 ORTHO05D008443 5.2e-14 81.6 59 72.9
vmacro20994 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 5.2e-14 81.6 53 77.4
Nn6g34351 Nelumbo nucifera HOM05D006684 ORTHO05D008443 6.7e-14 81.3 153 39.9
RcHm_v2.0_Chr1g0351131 Rosa chinensis HOM05D006684 ORTHO05D008443 6.7e-14 81.3 149 43.0
EL10Ac1g00926 Beta vulgaris HOM05D006684 ORTHO05D008443 8.8e-14 80.9 158 39.2
Os06g0129800 Oryza sativa ssp. japonica HOM05D006684 ORTHO05D008443 1.1e-13 80.5 161 39.8
MD02G1199700 Malus domestica HOM05D006684 ORTHO05D008443 1.5e-13 80.1 152 41.4
BcaC02g07085 Brassica carinata HOM05D006684 ORTHO05D008443 5.7e-13 78.2 154 40.3
FAN01G2432 Fragaria x ananassa HOM05D006684 ORTHO05D008443 2.8e-12 75.9 149 39.6
arahy.Tifrunner.gnm1.ann1.CFQ18P Arachis hypogaea HOM05D006684 ORTHO05D008443 3.7e-12 75.5 148 41.2
Hund17005 Selenicereus undatus HOM05D006684 ORTHO05D008443 3.7e-12 75.5 152 40.8
Zm00001eb378390 Zea mays HOM05D006684 ORTHO05D008443 3.7e-12 75.5 161 39.8
FAN10G2097 Fragaria x ananassa HOM05D006684 ORTHO05D008443 4.8e-12 75.1 72 56.9
TPR.G37765 Trifolium pratense HOM05D006684 ORTHO05D008443 6.3e-12 74.7 79 51.9
FvH4_7g12340 Fragaria vesca HOM05D006684 ORTHO05D008443 8.2e-12 74.3 150 38.7
FAN06G2821 Fragaria x ananassa HOM05D006684 ORTHO05D008443 8.2e-12 74.3 150 38.7
FAN06G3889 Fragaria x ananassa HOM05D006684 ORTHO05D008443 8.2e-12 74.3 150 38.7
HanXRQChr03g0093671 Helianthus annuus HOM05D006684 ORTHO05D008443 1.1e-11 73.9 147 42.2
Nitab4.5_0001702g0200 Nicotiana tabacum HOM05D006684 ORTHO05D008443 2.4e-11 72.8 66 57.6
FAN03G1779 Fragaria x ananassa HOM05D006684 ORTHO05D008443 4.1e-11 72.0 148 39.9
Ah.07g198740 Amaranthus hybridus HOM05D006684 ORTHO05D008443 5.3e-11 71.6 150 38.7
FAN10G0264 Fragaria x ananassa HOM05D006684 ORTHO05D008443 5.3e-11 71.6 148 39.9
Thhalv10001611m.g Eutrema salsugineum HOM05D006684 ORTHO05D008443 7.0e-11 71.2 154 39.6
Lalb_Chr03g0039091 Lupinus albus HOM05D006684 ORTHO05D008443 7.0e-11 71.2 141 36.9
Potri.014G072400 Populus trichocarpa HOM05D006684 ORTHO05D008443 7.0e-11 71.2 143 43.4
Aa31LG1G27020 Aethionema arabicum HOM05D006684 ORTHO05D008443 9.1e-11 70.9 151 38.4
CDE04G1869 Ceratophyllum demersum HOM05D006684 ORTHO05D008443 9.1e-11 70.9 151 39.1
Carub.0004s2814 Capsella rubella HOM05D006684 ORTHO05D008443 1.6e-10 70.1 47 72.3
Duzib133G0994 Durio zibethinus HOM05D006684 ORTHO05D008443 2.6e-10 69.3 75 58.7
BolC4t22271H Brassica oleracea HOM05D006684 ORTHO05D008443 3.5e-10 68.9 142 40.8
Lsat_1_v5_gn_3_135520 Lactuca sativa HOM05D006684 ORTHO05D008443 1.0e-09 67.4 130 41.5
A04p33890 Brassica napus HOM05D000147 ORTHO05D007841 1.3e-09 67.0 154 35.7
CARHR140710 Cardamine hirsuta HOM05D006684 ORTHO05D008443 2.9e-09 65.9 149 35.6
AL4G44700 Arabidopsis lyrata HOM05D006684 ORTHO05D008443 3.8e-09 65.5 142 40.8
ECA240G0119 Erigeron canadensis HOM05D006684 ORTHO05D008443 5.0e-09 65.1 142 41.5
AT2G45520 Arabidopsis thaliana HOM05D006684 ORTHO05D008443 6.5e-09 64.7 56 60.7
SGA_v2.0_scaffold11G05605 Striga asiatica HOM05D006684 ORTHO05D008443 2.5e-08 62.8 145 38.6
Hma1.2p1_0053F.1_g030880 Hydrangea macrophylla HOM05D006684 ORTHO05D008443 1.6e-07 60.1 158 36.7
AUR62004244 Chenopodium quinoa HOM05D006684 ORTHO05D008443 2.1e-07 59.7 137 33.6
SEGI_35511 Sequoiadendron giganteum HOM05D006684 ORTHO05D008443 1.0e-06 57.4 48 52.1
BraA05t19524Z Brassica rapa HOM05D006684 ORTHO05D008443 3.0e-06 55.8 141 37.6


User provided reference genes

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