Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16650 Corylus avellana HOM05D005915 ORTHO05D007239 5.9e-35 150.2 71 100.0
Manes.11G064500 Manihot esculenta HOM05D005915 ORTHO05D007239 5.4e-12 73.9 51 64.7
CiPaw.01G253100 Carya illinoinensis HOM05D005915 ORTHO05D007239 1.6e-11 72.4 51 64.7
Ciclev10026473m.g Citrus clementina HOM05D005915 ORTHO05D007239 1.3e-10 69.3 51 62.7
Atru.chr6.915 Acer truncatum HOM05D005915 ORTHO05D007239 1.7e-10 68.9 51 60.8
CANSAT56G1340 Cannabis sativa HOM05D005915 ORTHO05D007239 2.3e-10 68.6 50 68.0
COL.COLO4_26669 Corchorus olitorius HOM05D005915 ORTHO05D007239 3.0e-10 68.2 52 61.5
SHI11251 Sapria himalayana HOM05D005915 ORTHO05D007239 3.0e-10 68.2 53 58.5
Thecc.06G038900 Theobroma cacao HOM05D005915 ORTHO05D007239 3.9e-10 67.8 51 60.8
C06p53780 Brassica napus HOM05D005915 ORTHO05D007239 5.1e-10 67.4 53 64.2
Sed0026009 Sechium edule HOM05D005915 ORTHO05D007239 5.1e-10 67.4 52 63.5
A07p44990 Brassica napus HOM05D005915 ORTHO05D007239 6.6e-10 67.0 53 62.3
Aa31LG4G980 Aethionema arabicum HOM05D005915 ORTHO05D007239 1.1e-09 66.2 51 56.9
Duzib235G0368 Durio zibethinus HOM05D005915 ORTHO05D007239 1.1e-09 66.2 51 58.8
Rhsim08G0207800 Rhododendron simsii HOM05D005915 ORTHO05D007239 1.1e-09 66.2 51 60.8
vmacro19042 Vaccinium macrocarpon HOM05D005915 ORTHO05D007239 1.1e-09 66.2 59 59.3
Actinidia25458 Actinidia chinensis HOM05D005915 ORTHO05D007239 1.5e-09 65.9 51 58.8
Dinv23302 Davidia involucrata HOM05D005915 ORTHO05D007239 1.5e-09 65.9 51 58.8
Gohir.A09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 1.5e-09 65.9 51 58.8
Gohir.D09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 1.5e-09 65.9 51 58.8
Gorai.006G107100 Gossypium raimondii HOM05D005915 ORTHO05D007239 1.5e-09 65.9 51 58.8
BolC6t40396H Brassica oleracea HOM05D005915 ORTHO05D007239 1.9e-09 65.5 53 62.3
BraA07t32004Z Brassica rapa HOM05D005915 ORTHO05D007239 2.5e-09 65.1 54 59.3
BcaB02g07251 Brassica carinata HOM05D005915 ORTHO05D007239 3.3e-09 64.7 48 62.5
BcaC08g45335 Brassica carinata HOM05D005915 ORTHO05D007239 3.3e-09 64.7 48 62.5
C06p29450 Brassica napus HOM05D005915 ORTHO05D007239 3.3e-09 64.7 48 62.5
BolC6t38110H Brassica oleracea HOM05D005915 ORTHO05D007239 3.3e-09 64.7 48 62.5
BraA07t30325Z Brassica rapa HOM05D005915 ORTHO05D007239 3.3e-09 64.7 48 62.5
Carub.0002s2685 Capsella rubella HOM05D005915 ORTHO05D007239 3.3e-09 64.7 51 58.8
Sp5g35050 Schrenkiella parvula HOM05D005915 ORTHO05D007239 3.3e-09 64.7 48 62.5
AT1G80700 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 4.3e-09 64.3 51 60.8
ClCG07G012140 Citrullus lanatus HOM05D005915 ORTHO05D007239 4.3e-09 64.3 51 58.8
Eucgr.J03100 Eucalyptus grandis HOM05D005915 ORTHO05D007239 5.6e-09 63.9 51 54.9
PGR142G0337 Punica granatum HOM05D005915 ORTHO05D007239 5.6e-09 63.9 50 58.0
THA.LOC104812439 Tarenaya hassleriana HOM05D005915 ORTHO05D007239 5.6e-09 63.9 51 56.9
BcaC08g47553 Brassica carinata HOM05D005915 ORTHO05D007239 9.5e-09 63.2 48 60.4
Potri.001G047700 Populus trichocarpa HOM05D005915 ORTHO05D007239 9.5e-09 63.2 51 56.9
Actinidia25450 Actinidia chinensis HOM05D005915 ORTHO05D007239 1.2e-08 62.8 37 75.7
TWI12G0041 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 1.6e-08 62.4 51 54.9
TWI18G1314 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 1.6e-08 62.4 51 54.9
QL02p069532 Quercus lobata HOM05D005915 ORTHO05D007239 2.1e-08 62.0 52 59.6
A07p26820 Brassica napus HOM05D005915 ORTHO05D007239 2.8e-08 61.6 48 60.4
MELO3C017835.2 Cucumis melo HOM05D005915 ORTHO05D007239 3.6e-08 61.2 51 56.9
CsaV3_4G002020 Cucumis sativus L. HOM05D005915 ORTHO05D007239 4.7e-08 60.8 51 56.9
MSTRG.4689 Avicennia marina HOM05D005915 ORTHO05D007239 6.2e-08 60.5 48 56.2
MD17G1221100 Malus domestica HOM05D005915 ORTHO05D007239 6.2e-08 60.5 54 55.6
Potri.003G180500 Populus trichocarpa HOM05D005915 ORTHO05D007239 6.2e-08 60.5 51 52.9
Dinv21397 Davidia involucrata HOM05D005915 ORTHO05D007239 1.1e-07 59.7 37 73.0
Sabra01G0033000 Salix brachista HOM05D005915 ORTHO05D007239 1.1e-07 59.7 51 54.9
Prupe.7G069400 Prunus persica HOM05D005915 ORTHO05D007239 1.4e-07 59.3 51 54.9
PGR102G1994 Punica granatum HOM05D005915 ORTHO05D007239 1.8e-07 58.9 50 56.0
Aqoxy7G03485 Aquilegia oxysepala HOM05D005915 ORTHO05D007239 4.0e-07 57.8 46 63.0
Nn2g12284 Nelumbo nucifera HOM05D005915 ORTHO05D007239 4.0e-07 57.8 43 60.5
PGSC0003DMG400014193 Solanum tuberosum HOM05D005915 ORTHO05D007239 4.0e-07 57.8 43 60.5
SGA_v2.0_scaffold89G27484 Striga asiatica HOM05D005915 ORTHO05D007239 4.0e-07 57.8 50 54.0
Oeu033656.3 Olea europaea HOM05D005915 ORTHO05D007239 6.8e-07 57.0 52 50.0
HPP92_016367 Vanilla planifolia HOM05D005915 ORTHO05D007239 6.8e-07 57.0 52 51.9
Ca_20554_v3 Cicer arietinum L. HOM05D005915 ORTHO05D007239 8.9e-07 56.6 44 59.1
ClCG00G004860 Citrullus lanatus HOM05D005915 ORTHO05D007239 8.9e-07 56.6 36 72.2
HanXRQChr09g0274531 Helianthus annuus HOM05D005915 ORTHO05D007239 8.9e-07 56.6 50 54.0
Solyc03g117090.3 Solanum lycopersicum HOM05D005915 ORTHO05D007239 8.9e-07 56.6 43 58.1
Sopen03g036000 Solanum pennellii HOM05D005915 ORTHO05D007239 8.9e-07 56.6 43 58.1
GSVIVG01017558001 Vitis vinifera HOM05D005915 ORTHO05D007239 8.9e-07 56.6 29 89.7
AT1G80980 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 1.2e-06 56.2 41 65.9
Nitab4.5_0001454g0070 Nicotiana tabacum HOM05D005915 ORTHO05D007239 1.2e-06 56.2 43 58.1
TPR.G17738 Trifolium pratense HOM05D005915 ORTHO05D007239 1.5e-06 55.8 44 59.1
TPR.G38763 Trifolium pratense HOM05D005915 ORTHO05D007239 1.5e-06 55.8 44 59.1
Phvul.010G159800 Phaseolus vulgaris HOM05D005915 ORTHO05D007239 2.0e-06 55.5 44 56.8
Nitab4.5_0009423g0020 Nicotiana tabacum HOM05D005915 ORTHO05D007239 2.6e-06 55.1 49 53.1
SalBow6G5910 Salvia bowleyana HOM05D005915 ORTHO05D007239 2.6e-06 55.1 49 51.0
VMungo0331G1031 Vigna mungo HOM05D005915 ORTHO05D007239 2.6e-06 55.1 44 56.8
CARHR073810 Cardamine hirsuta HOM05D005915 ORTHO05D007239 3.4e-06 54.7 47 59.6
Thhalv10019105m.g Eutrema salsugineum HOM05D005915 ORTHO05D007239 3.4e-06 54.7 41 63.4
TAR633G0597 Trochodendron aralioides HOM05D005915 ORTHO05D007239 4.4e-06 54.3 43 58.1
AL2G40740 Arabidopsis lyrata HOM05D005915 ORTHO05D007239 7.6e-06 53.5 40 65.0
Psat7g259880 Pisum sativum HOM05D005915 ORTHO05D007239 7.6e-06 53.5 44 54.5


User provided reference genes

Program Settings