Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16606 Corylus avellana HOM05D003361 ORTHO05D003760 2.7e-37 159.8 259 100.0
CiPaw.02G158600 Carya illinoinensis HOM05D003361 ORTHO05D003760 2.5e-30 136.7 83 86.7
QL05p032608 Quercus lobata HOM05D003361 ORTHO05D003760 5.5e-30 135.6 80 88.8
PGR031G1162 Punica granatum HOM05D003361 ORTHO05D003760 1.4e-28 131.0 83 83.1
RcHm_v2.0_Chr2g0134401 Rosa chinensis HOM05D003361 ORTHO05D003760 1.4e-28 131.0 83 84.3
AL1G27850 Arabidopsis lyrata HOM05D003361 ORTHO05D003760 5.2e-28 129.0 83 79.5
AT1G15740 Arabidopsis thaliana HOM05D003361 ORTHO05D003760 5.2e-28 129.0 83 79.5
A06p11730 Brassica napus HOM05D003361 ORTHO05D003760 5.2e-28 129.0 83 79.5
C05p13880 Brassica napus HOM05D003361 ORTHO05D003760 5.2e-28 129.0 83 79.5
BolC5t30122H Brassica oleracea HOM05D003361 ORTHO05D003760 5.2e-28 129.0 83 79.5
BraA06t24343Z Brassica rapa HOM05D003361 ORTHO05D003760 5.2e-28 129.0 83 79.5
Thhalv10007169m.g Eutrema salsugineum HOM05D003361 ORTHO05D003760 5.2e-28 129.0 83 79.5
Sp1g14030 Schrenkiella parvula HOM05D003361 ORTHO05D003760 5.2e-28 129.0 83 79.5
Duzib160G0541 Durio zibethinus HOM05D003361 ORTHO05D003760 8.8e-28 128.3 83 79.5
CANSAT56G3261 Cannabis sativa HOM05D003361 ORTHO05D003760 1.2e-27 127.9 83 80.7
COL.COLO4_11855 Corchorus olitorius HOM05D003361 ORTHO05D003760 2.0e-27 127.1 83 79.5
Carub.0001s1551 Capsella rubella HOM05D003361 ORTHO05D003760 9.7e-27 124.8 83 75.9
Glyma.08G214500 Glycine max HOM05D003361 ORTHO05D003760 3.7e-26 122.9 81 79.0
SalBow7G0810 Salvia bowleyana HOM05D003361 ORTHO05D003760 3.1e-25 119.8 83 75.9
arahy.Tifrunner.gnm1.ann1.JM4LQW Arachis hypogaea HOM05D003361 ORTHO05D003760 4.1e-25 119.4 83 75.9
arahy.Tifrunner.gnm1.ann1.NFA80P Arachis hypogaea HOM05D003361 ORTHO05D003760 4.1e-25 119.4 83 75.9
BcaC05g25516 Brassica carinata HOM05D003361 ORTHO05D003760 4.1e-25 119.4 81 79.0
MD17G1217000 Malus domestica HOM05D003361 ORTHO05D003760 4.1e-25 119.4 81 79.0
Ca_12515_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 7.0e-25 118.6 82 74.4
Glyma.17G107400 Glycine max HOM05D003361 ORTHO05D003760 2.0e-24 117.1 83 73.5
GSVIVG01012857001 Vitis vinifera HOM05D003361 ORTHO05D003760 2.7e-24 116.7 81 75.3
vmacro16874 Vaccinium macrocarpon HOM05D003361 ORTHO05D003760 1.0e-23 114.8 83 71.1
GSVIVG01017472001 Vitis vinifera HOM05D003361 ORTHO05D003760 1.0e-23 114.8 83 74.7
DCAR_025527 Daucus carota HOM05D003361 ORTHO05D003760 1.3e-23 114.4 83 71.1
CARHR016230 Cardamine hirsuta HOM05D003361 ORTHO05D003760 2.2e-23 113.6 83 74.7
CDE05G0968 Ceratophyllum demersum HOM05D003361 ORTHO05D003760 2.2e-23 113.6 83 73.5
Potri.006G061700 Populus trichocarpa HOM05D003361 ORTHO05D003760 2.2e-23 113.6 83 72.3
TWI32G1011 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 2.9e-23 113.2 83 71.1
Nitab4.5_0001017g0020 Nicotiana tabacum HOM05D003361 ORTHO05D003760 3.8e-23 112.8 83 75.9
Nn2g12188 Nelumbo nucifera HOM05D003361 ORTHO05D003760 5.0e-23 112.5 83 71.1
Phvul.010G157600 Phaseolus vulgaris HOM05D003361 ORTHO05D003760 5.0e-23 112.5 81 75.3
Medtr4g009870 Medicago truncatula HOM05D003361 ORTHO05D003760 8.5e-23 111.7 82 70.7
Nn8g39646 Nelumbo nucifera HOM05D003361 ORTHO05D003760 8.5e-23 111.7 83 69.9
Peaxi162Scf00332g00127 Petunia axillaris HOM05D003361 ORTHO05D003760 8.5e-23 111.7 81 74.1
Duzib150G0304 Durio zibethinus HOM05D003361 ORTHO05D003760 1.5e-22 110.9 83 72.3
Duzib150G0604 Durio zibethinus HOM05D003361 ORTHO05D003760 1.5e-22 110.9 83 72.3
Nitab4.5_0002322g0060 Nicotiana tabacum HOM05D003361 ORTHO05D003760 1.5e-22 110.9 83 74.7
MBI14_g24987_MAGBIO Magnolia biondii HOM05D003361 ORTHO05D003760 1.9e-22 110.5 82 69.5
QL02p090717 Quercus lobata HOM05D003361 ORTHO05D003760 1.9e-22 110.5 82 72.0
Duzib187G1093 Durio zibethinus HOM05D003361 ORTHO05D003760 2.5e-22 110.2 83 69.9
Manes.14G119228 Manihot esculenta HOM05D003361 ORTHO05D003760 4.2e-22 109.4 82 69.5
Medtr4g116170 Medicago truncatula HOM05D003361 ORTHO05D003760 4.2e-22 109.4 80 70.0
CAN.G407.25 Capsicum annuum HOM05D003361 ORTHO05D003760 5.5e-22 109.0 83 71.1
Glyma.07G028300 Glycine max HOM05D003361 ORTHO05D003760 5.5e-22 109.0 81 76.5
arahy.Tifrunner.gnm1.ann1.T3C7Q8 Arachis hypogaea HOM05D003361 ORTHO05D003760 7.2e-22 108.6 78 70.5
Thecc.09G137400 Theobroma cacao HOM05D003361 ORTHO05D003760 7.2e-22 108.6 83 68.7
Prupe.7G252400 Prunus persica HOM05D003361 ORTHO05D003760 9.4e-22 108.2 81 70.4
MSTRG.11160 Avicennia marina HOM05D003361 ORTHO05D003760 1.2e-21 107.8 83 69.9
TPR.G38632 Trifolium pratense HOM05D003361 ORTHO05D003760 1.6e-21 107.5 81 70.4
Os04g0503500 Oryza sativa ssp. japonica HOM05D003361 ORTHO05D003760 2.1e-21 107.1 83 69.9
Sabra06G0044400 Salix brachista HOM05D003361 ORTHO05D003760 2.1e-21 107.1 81 69.1
TPR.G7990 Trifolium pratense HOM05D003361 ORTHO05D003760 2.7e-21 106.7 83 67.5
MD02G1018400 Malus domestica HOM05D003361 ORTHO05D003760 3.6e-21 106.3 83 67.5
MSTRG.22764 Avicennia marina HOM05D003361 ORTHO05D003760 4.7e-21 105.9 79 69.6
Psat0s571g0080 Pisum sativum HOM05D003361 ORTHO05D003760 8.0e-21 105.1 83 65.1
arahy.Tifrunner.gnm1.ann1.H7Z4S8 Arachis hypogaea HOM05D003361 ORTHO05D003760 1.0e-20 104.8 83 69.9
Lj9A497T71 Lonicera japonica HOM05D003361 ORTHO05D003760 1.4e-20 104.4 83 73.5
Zm00001eb078100 Zea mays HOM05D003361 ORTHO05D003760 1.4e-20 104.4 83 65.1
Ah.09g224100 Amaranthus hybridus HOM05D003361 ORTHO05D003760 4.0e-20 102.8 83 67.5
Ca_21637_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 5.2e-20 102.4 81 66.7
CiPaw.01G250600 Carya illinoinensis HOM05D003361 ORTHO05D003760 6.8e-20 102.1 83 69.9
Cc04_g04660 Coffea canephora HOM05D003361 ORTHO05D003760 6.8e-20 102.1 83 69.9
Glyma.13G367200 Glycine max HOM05D003361 ORTHO05D003760 1.5e-19 100.9 83 69.9
Rhsim12G0189300 Rhododendron simsii HOM05D003361 ORTHO05D003760 2.0e-19 100.5 100 58.0
Manes.11G061100 Manihot esculenta HOM05D003361 ORTHO05D003760 3.4e-19 99.8 83 71.1
TWI12G0888 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 3.4e-19 99.8 83 66.3
FAN10G0285 Fragaria x ananassa HOM05D008657 ORTHO05D010869 7.5e-19 98.6 83 65.1
Atru.chr7.2012 Acer truncatum HOM05D003361 ORTHO05D003760 1.7e-18 97.4 83 67.5
FAN09G2631 Fragaria x ananassa HOM05D003361 ORTHO05D003760 2.8e-18 96.7 81 70.4
FAN10G3145 Fragaria x ananassa HOM05D003361 ORTHO05D003760 2.8e-18 96.7 83 62.7
Lalb_Chr01g0012261 Lupinus albus HOM05D003361 ORTHO05D003760 2.8e-18 96.7 82 68.3
Lj3g0011414 Lotus japonicus HOM05D003361 ORTHO05D003760 4.8e-18 95.9 83 68.7
TAR626G1829 Trochodendron aralioides HOM05D003361 ORTHO05D003760 4.8e-18 95.9 80 66.2
TWI75G0489 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 6.3e-18 95.5 83 61.4
Lj3g0027196 Lotus japonicus HOM05D003361 ORTHO05D003760 5.4e-17 92.4 83 66.3
Aqoxy7G02456 Aquilegia oxysepala HOM05D003361 ORTHO05D003760 9.1e-17 91.7 83 65.1
THA.LOC104812464 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 2.0e-16 90.5 83 65.1
CAN.G551.67 Capsicum annuum HOM05D003361 ORTHO05D003760 2.7e-16 90.1 83 60.2
Prupe.3G092900 Prunus persica HOM05D003361 ORTHO05D003760 5.9e-16 89.0 83 63.9
Sed0010441 Sechium edule HOM05D003361 ORTHO05D003760 7.7e-16 88.6 83 61.4
Solyc07g007400.3 Solanum lycopersicum HOM05D003361 ORTHO05D003760 1.0e-15 88.2 81 59.3
Thecc.06G033100 Theobroma cacao HOM05D003361 ORTHO05D003760 1.0e-15 88.2 83 62.7
FAN06G3182 Fragaria x ananassa HOM05D003361 ORTHO05D003760 1.7e-15 87.4 87 59.8
Solyc12g009870.2 Solanum lycopersicum HOM05D003361 ORTHO05D003760 1.7e-15 87.4 83 60.2
THA.LOC104808198 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 1.7e-15 87.4 83 62.7
MELO3C023445.2 Cucumis melo HOM05D003361 ORTHO05D003760 2.9e-15 86.7 83 61.4
CsaV3_7G032160 Cucumis sativus L. HOM05D003361 ORTHO05D003760 2.9e-15 86.7 83 61.4
Phvul.003G172400 Phaseolus vulgaris HOM05D003361 ORTHO05D003760 2.9e-15 86.7 80 63.8
Cc06_g07660 Coffea canephora HOM05D003361 ORTHO05D003760 3.8e-15 86.3 80 58.8
Aa31LG7G360 Aethionema arabicum HOM05D003361 ORTHO05D003760 5.0e-15 85.9 81 63.0
Actinidia08955 Actinidia chinensis HOM05D003361 ORTHO05D003760 6.6e-15 85.5 83 62.7
Duzib235G0043 Durio zibethinus HOM05D003361 ORTHO05D003760 6.6e-15 85.5 83 62.7
Gohir.D08G101300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 6.6e-15 85.5 83 63.9
Gorai.004G109300 Gossypium raimondii HOM05D003361 ORTHO05D003760 6.6e-15 85.5 83 63.9
Solyc03g117420.4 Solanum lycopersicum HOM05D003361 ORTHO05D003760 8.6e-15 85.1 63 69.8
Ciclev10025249m.g Citrus clementina HOM05D003361 ORTHO05D003760 1.5e-14 84.3 83 62.7
MD15G1162400 Malus domestica HOM05D003361 ORTHO05D003760 1.5e-14 84.3 80 62.5
FvH4_6g29180 Fragaria vesca HOM05D003361 ORTHO05D003760 2.5e-14 83.6 81 63.0
Lsat_1_v5_gn_5_8861 Lactuca sativa HOM05D003361 ORTHO05D003760 2.5e-14 83.6 82 61.0
Lalb_Chr12g0198401 Lupinus albus HOM05D003361 ORTHO05D003760 4.2e-14 82.8 83 61.4
Migut.I00738 Erythranthe guttata HOM05D003361 ORTHO05D003760 5.5e-14 82.4 83 53.0
COL.COLO4_33367 Corchorus olitorius HOM05D003361 ORTHO05D003760 7.2e-14 82.0 83 62.7
FAN05G3872 Fragaria x ananassa HOM05D003361 ORTHO05D003760 7.2e-14 82.0 81 61.7
FAN14G3167 Fragaria x ananassa HOM05D003361 ORTHO05D003760 7.2e-14 82.0 81 61.7
Manes.04G108700 Manihot esculenta HOM05D003361 ORTHO05D003760 9.5e-14 81.6 83 60.2
ATR0767G175 Amborella trichopoda HOM05D003361 ORTHO05D003760 1.2e-13 81.3 83 53.0
VMungo0331G0010 Vigna mungo HOM05D003361 ORTHO05D003760 1.2e-13 81.3 78 62.8
AUR62011226 Chenopodium quinoa HOM05D003361 ORTHO05D003760 2.1e-13 80.5 83 54.2
FAN02G1685 Fragaria x ananassa HOM05D003361 ORTHO05D003760 2.8e-13 80.1 81 60.5
Gohir.A08G090300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 3.6e-13 79.7 83 61.4
Sed0016861 Sechium edule HOM05D003361 ORTHO05D003760 3.6e-13 79.7 83 57.8
CANSAT11G0288 Cannabis sativa HOM05D003361 ORTHO05D003760 4.7e-13 79.3 83 59.0
AUR62020008 Chenopodium quinoa HOM05D003361 ORTHO05D003760 4.7e-13 79.3 83 54.2
VMungo0459G0001 Vigna mungo HOM05D003361 ORTHO05D003760 4.7e-13 79.3 79 60.8
Atru.chr1.2849 Acer truncatum HOM05D003361 ORTHO05D003760 6.1e-13 79.0 81 60.5
Glyma.13G163500 Glycine max HOM05D003361 ORTHO05D003760 6.1e-13 79.0 83 60.2
Oeu029903.1 Olea europaea HOM05D003361 ORTHO05D003760 1.0e-12 78.2 83 59.0
Actinidia15973 Actinidia chinensis HOM05D003361 ORTHO05D003760 1.4e-12 77.8 77 61.0
CSS0014218 Camellia sinensis var. sinensis HOM05D003361 ORTHO05D003760 1.8e-12 77.4 83 57.8
Nitab4.5_0009284g0020 Nicotiana tabacum HOM05D003361 ORTHO05D003760 5.2e-12 75.9 96 49.0
Cpa.g.sc46.67 Carica papaya HOM05D003361 ORTHO05D003760 8.9e-12 75.1 83 55.4
HanXRQChr17g0570311 Helianthus annuus HOM05D003361 ORTHO05D003760 8.9e-12 75.1 83 56.6
SGA_v2.0_scaffold37G14747 Striga asiatica HOM05D003361 ORTHO05D003760 8.9e-12 75.1 76 60.5
HPP92_027277 Vanilla planifolia HOM05D003361 ORTHO05D003760 1.5e-11 74.3 83 53.0
Hund00496 Selenicereus undatus HOM05D003361 ORTHO05D003760 3.4e-11 73.2 62 62.9
PGSC0003DMG400007912 Solanum tuberosum HOM05D003361 ORTHO05D003760 4.4e-11 72.8 83 51.8
FAN28G0525 Fragaria x ananassa HOM05D003361 ORTHO05D003760 5.7e-11 72.4 81 55.6
RcHm_v2.0_Chr2g0087081 Rosa chinensis HOM05D003361 ORTHO05D003760 5.7e-11 72.4 83 55.4
FvH4_1g02020 Fragaria vesca HOM05D003361 ORTHO05D003760 7.5e-11 72.0 83 55.4
FAN06G4763 Fragaria x ananassa HOM05D003361 ORTHO05D003760 1.3e-10 71.2 66 59.1
EL10Ac8g18785 Beta vulgaris HOM05D003361 ORTHO05D003760 2.2e-10 70.5 83 49.4
ClCG09G003110 Citrullus lanatus HOM05D003361 ORTHO05D003760 3.7e-10 69.7 82 52.4
ECA246G4877 Erigeron canadensis HOM05D003361 ORTHO05D003760 4.9e-10 69.3 83 54.2
Gohir.A10G072100 Gossypium hirsutum HOM05D003361 ORTHO05D003760 4.9e-10 69.3 81 53.1
Gohir.D10G079000 Gossypium hirsutum HOM05D003361 ORTHO05D003760 4.9e-10 69.3 81 53.1
Gorai.011G085800 Gossypium raimondii HOM05D003361 ORTHO05D003760 4.9e-10 69.3 81 53.1
Hund21595 Selenicereus undatus HOM05D003361 ORTHO05D003760 1.4e-09 67.8 81 54.3
Os02g0613200 Oryza sativa ssp. japonica HOM05D003361 ORTHO05D003760 2.4e-09 67.0 83 50.6
Lj4g0018391 Lotus japonicus HOM05D003361 ORTHO05D003760 7.0e-09 65.5 78 52.6
Eucgr.J03087 Eucalyptus grandis HOM05D003361 ORTHO05D003760 2.0e-08 63.9 79 51.9
SHI02099 Sapria himalayana HOM05D000105 ORTHO05D000023 3.5e-08 63.2 71 47.9
Zm00001eb247040 Zea mays HOM05D003361 ORTHO05D003760 4.5e-08 62.8 83 48.2
FAN19G1251 Fragaria x ananassa HOM05D002026 ORTHO05D002291 2.3e-07 60.5 78 51.3
FAN26G2276 Fragaria x ananassa HOM05D003361 ORTHO05D003760 2.3e-07 60.5 83 49.4
FvH4_7g04581 Fragaria vesca HOM05D003361 ORTHO05D003760 1.9e-06 57.4 45 66.7
arahy.Tifrunner.gnm1.ann1.TB3UR8 Arachis hypogaea HOM05D003361 ORTHO05D003760 3.3e-06 56.6 79 41.8
arahy.Tifrunner.gnm1.ann1.YII6YD Arachis hypogaea HOM05D003361 ORTHO05D003760 3.3e-06 56.6 79 41.8
Sopen07g003470 Solanum pennellii HOM05D003361 ORTHO05D003760 4.3e-06 56.2 81 42.0


User provided reference genes

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