Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16576 Corylus avellana HOM05D002695 ORTHO05D002964 5.0e-31 137.5 89 100.0
Cfa001951 Carpinus fangiana HOM05D002695 ORTHO05D002964 1.4e-28 129.4 86 97.7
QL05p030652 Quercus lobata HOM05D002695 ORTHO05D002964 1.6e-21 105.9 89 58.4
FAN05G1325 Fragaria x ananassa HOM05D002695 ORTHO05D002964 4.7e-21 104.4 93 65.6
FAN02G0115 Fragaria x ananassa HOM05D002695 ORTHO05D002964 3.0e-20 101.7 90 63.3
FAN09G0304 Fragaria x ananassa HOM05D002695 ORTHO05D002964 3.0e-20 101.7 95 66.3
RcHm_v2.0_Chr2g0134961 Rosa chinensis HOM05D002695 ORTHO05D002964 4.0e-20 101.3 95 65.3
CiPaw.02G157900 Carya illinoinensis HOM05D002695 ORTHO05D002964 5.2e-20 100.9 90 74.4
FAN14G2212 Fragaria x ananassa HOM05D002695 ORTHO05D002964 4.4e-19 97.8 93 65.6
FvH4_6g29460 Fragaria vesca HOM05D002695 ORTHO05D002964 2.8e-18 95.1 94 63.8
CiPaw.01G249300 Carya illinoinensis HOM05D002695 ORTHO05D002964 3.7e-18 94.7 90 65.6
Prupe.3G089800 Prunus persica HOM05D002695 ORTHO05D002964 5.9e-16 87.4 91 50.5
CANSAT56G0329 Cannabis sativa HOM05D002695 ORTHO05D002964 1.3e-15 86.3 88 52.3
ClCG09G002970 Citrullus lanatus HOM05D002695 ORTHO05D002964 2.3e-15 85.5 88 50.0
GSVIVG01017363001 Vitis vinifera HOM05D002695 ORTHO05D002964 3.8e-15 84.7 86 47.7
MD17G1213900 Malus domestica HOM05D002695 ORTHO05D002964 1.1e-14 83.2 98 49.0
Thhalv10020136m.g Eutrema salsugineum HOM05D002695 ORTHO05D002964 5.5e-14 80.9 90 47.8
MELO3C023429.2 Cucumis melo HOM05D002695 ORTHO05D002964 3.6e-13 78.2 88 48.9
BcaB04g20896 Brassica carinata HOM05D002695 ORTHO05D002964 4.7e-13 77.8 96 44.8
BcaC09g48569 Brassica carinata HOM05D002695 ORTHO05D002964 6.1e-13 77.4 92 46.7
C01p48460 Brassica napus HOM05D002695 ORTHO05D002964 6.1e-13 77.4 92 46.7
BolC1t04806H Brassica oleracea HOM05D002695 ORTHO05D002964 6.1e-13 77.4 92 46.7
A01p38190 Brassica napus HOM05D002695 ORTHO05D002964 8.0e-13 77.0 90 46.7
BraA01t03877Z Brassica rapa HOM05D002695 ORTHO05D002964 8.0e-13 77.0 90 46.7
Carub.0003s1566 Capsella rubella HOM05D002695 ORTHO05D002964 1.8e-12 75.9 91 45.1
CARHR091060 Cardamine hirsuta HOM05D002695 ORTHO05D002964 1.8e-12 75.9 87 47.1
THA.LOC104818021 Tarenaya hassleriana HOM05D002695 ORTHO05D002964 1.8e-12 75.9 95 46.3
AT3G15920 Arabidopsis thaliana HOM05D002695 ORTHO05D002964 2.3e-12 75.5 88 46.6
CsaV3_7G032310 Cucumis sativus L. HOM05D002695 ORTHO05D002964 6.8e-12 73.9 88 45.5
AL3G28560 Arabidopsis lyrata HOM05D002695 ORTHO05D002964 1.2e-11 73.2 89 46.1
Duzib160G0818 Durio zibethinus HOM05D002695 ORTHO05D002964 1.2e-11 73.2 90 56.7
Thecc.06G030300 Theobroma cacao HOM05D002695 ORTHO05D002964 2.6e-11 72.0 87 56.3
Duzib192G0949 Durio zibethinus HOM05D002695 ORTHO05D002964 3.4e-11 71.6 88 46.6
Manes.04G111600 Manihot esculenta HOM05D002695 ORTHO05D002964 3.4e-11 71.6 98 41.8
PGR102G1641 Punica granatum HOM05D002695 ORTHO05D002964 3.4e-11 71.6 86 43.0
Lalb_Chr24g0395441 Lupinus albus HOM05D002695 ORTHO05D002964 4.4e-11 71.2 88 44.3
COL.COLO4_11913 Corchorus olitorius HOM05D002695 ORTHO05D002964 5.7e-11 70.9 87 48.3
arahy.Tifrunner.gnm1.ann1.E3M3ZX Arachis hypogaea HOM05D002695 ORTHO05D002964 7.5e-11 70.5 88 42.0
arahy.Tifrunner.gnm1.ann1.XRJX2S Arachis hypogaea HOM05D002695 ORTHO05D002964 7.5e-11 70.5 88 42.0
ClCG05G016800 Citrullus lanatus HOM05D002695 ORTHO05D002964 1.7e-10 69.3 31 90.3
MELO3C003708.2 Cucumis melo HOM05D002695 ORTHO05D002964 1.7e-10 69.3 31 90.3
CsaV3_3G046310 Cucumis sativus L. HOM05D002695 ORTHO05D002964 1.7e-10 69.3 31 90.3
Sp3g14240 Schrenkiella parvula HOM05D002695 ORTHO05D002964 1.7e-10 69.3 90 43.3
Sed0017615 Sechium edule HOM05D002695 ORTHO05D002964 1.7e-10 69.3 31 90.3
Sed0021690 Sechium edule HOM05D002695 ORTHO05D002964 1.7e-10 69.3 88 44.3
Sabra01G0159500 Salix brachista HOM05D002695 ORTHO05D002964 3.7e-10 68.2 84 56.0
Actinidia15669 Actinidia chinensis HOM05D002695 ORTHO05D002964 4.9e-10 67.8 32 84.4
Hund30133 Selenicereus undatus HOM05D002695 ORTHO05D002964 6.3e-10 67.4 86 45.3
Aa31LG2G17770 Aethionema arabicum HOM05D002695 ORTHO05D002964 8.3e-10 67.0 31 87.1
AT4G32160 Arabidopsis thaliana HOM05D002695 ORTHO05D002964 8.3e-10 67.0 31 87.1
BcaNung03142 Brassica carinata HOM05D002695 ORTHO05D002964 8.3e-10 67.0 31 87.1
CARHR240090 Cardamine hirsuta HOM05D002695 ORTHO05D002964 8.3e-10 67.0 31 87.1
COL.COLO4_18872 Corchorus olitorius HOM05D002695 ORTHO05D002964 8.3e-10 67.0 31 87.1
Thhalv10024530m.g Eutrema salsugineum HOM05D002695 ORTHO05D002964 8.3e-10 67.0 31 87.1
Gohir.A06G098700 Gossypium hirsutum HOM05D002695 ORTHO05D002964 8.3e-10 67.0 31 87.1
Gohir.D06G100800 Gossypium hirsutum HOM05D002695 ORTHO05D002964 8.3e-10 67.0 31 87.1
Gohir.D07G033000 Gossypium hirsutum HOM05D002695 ORTHO05D002964 8.3e-10 67.0 31 87.1
Gorai.001G034600 Gossypium raimondii HOM05D002695 ORTHO05D002964 8.3e-10 67.0 31 87.1
Gorai.010G115900 Gossypium raimondii HOM05D002695 ORTHO05D002964 8.3e-10 67.0 31 87.1
Manes.03G013500 Manihot esculenta HOM05D002695 ORTHO05D002964 8.3e-10 67.0 31 87.1
Manes.16G123100 Manihot esculenta HOM05D002695 ORTHO05D002964 8.3e-10 67.0 31 87.1
SalBow2G2196 Salvia bowleyana HOM05D002695 ORTHO05D002964 8.3e-10 67.0 87 41.4
Sp7g29950 Schrenkiella parvula HOM05D002695 ORTHO05D002964 8.3e-10 67.0 31 87.1
Sed0003168 Sechium edule HOM05D002695 ORTHO05D002964 8.3e-10 67.0 31 87.1
Thecc.09G023100 Theobroma cacao HOM05D002695 ORTHO05D002964 8.3e-10 67.0 31 87.1
BcaC09g52002 Brassica carinata HOM05D002695 ORTHO05D002964 1.1e-09 66.6 30 90.0
A01p06170 Brassica napus HOM05D002695 ORTHO05D002964 1.1e-09 66.6 30 90.0
C01p06800 Brassica napus HOM05D002695 ORTHO05D002964 1.1e-09 66.6 30 90.0
BolC1t00674H Brassica oleracea HOM05D002695 ORTHO05D002964 1.1e-09 66.6 30 90.0
BraA01t00583Z Brassica rapa HOM05D002695 ORTHO05D002964 1.1e-09 66.6 30 90.0
CANSAT25G2957 Cannabis sativa HOM05D002695 ORTHO05D002964 1.1e-09 66.6 30 90.0
Carub.0007s0840 Capsella rubella HOM05D002695 ORTHO05D002964 1.1e-09 66.6 30 90.0
CiPaw.07G224300 Carya illinoinensis HOM05D002695 ORTHO05D002964 1.1e-09 66.6 30 90.0
Eucgr.C01726 Eucalyptus grandis HOM05D002695 ORTHO05D002964 1.1e-09 66.6 30 90.0
MD08G1155500 Malus domestica HOM05D002695 ORTHO05D002964 1.1e-09 66.6 30 90.0
Prupe.1G482400 Prunus persica HOM05D002695 ORTHO05D002964 1.1e-09 66.6 30 90.0
QL02p021402 Quercus lobata HOM05D002695 ORTHO05D002964 1.1e-09 66.6 30 90.0
Gohir.A10G072900 Gossypium hirsutum HOM05D002695 ORTHO05D002964 1.4e-09 66.2 86 43.0
Cpa.g.sc217.13 Carica papaya HOM05D002695 ORTHO05D002964 1.8e-09 65.9 31 83.9
Cfa013131 Carpinus fangiana HOM05D002695 ORTHO05D002964 1.8e-09 65.9 30 86.7
Haze_21501 Corylus avellana HOM05D002695 ORTHO05D002964 1.8e-09 65.9 30 86.7
DCAR_006212 Daucus carota HOM05D002695 ORTHO05D002964 1.8e-09 65.9 30 86.7
Potri.001G201900 Populus trichocarpa HOM05D002695 ORTHO05D002964 1.8e-09 65.9 88 55.7
Sc09g0008180 Simmondsia chinensis HOM05D002695 ORTHO05D002964 1.8e-09 65.9 31 83.9
Atru.chr7.2446 Acer truncatum HOM05D002695 ORTHO05D002964 2.4e-09 65.5 31 83.9
Dinv18209 Davidia involucrata HOM05D002695 ORTHO05D002964 2.4e-09 65.5 31 83.9
Dinv08630 Davidia involucrata HOM05D002695 ORTHO05D002964 3.1e-09 65.1 30 86.7
Dinv30618 Davidia involucrata HOM05D002695 ORTHO05D002964 3.1e-09 65.1 87 59.8
PGR031G0813 Punica granatum HOM05D002695 ORTHO05D002964 3.1e-09 65.1 30 86.7
TAR636G3025 Trochodendron aralioides HOM05D002695 ORTHO05D002964 3.1e-09 65.1 30 86.7
AT2G25350 Arabidopsis thaliana HOM05D002695 ORTHO05D002964 4.1e-09 64.7 30 86.7
FvH4_2g28930 Fragaria vesca HOM05D002695 ORTHO05D002964 4.1e-09 64.7 27 96.3
FAN15G2469 Fragaria x ananassa HOM05D002695 ORTHO05D002964 4.1e-09 64.7 27 96.3
FAN20G0785 Fragaria x ananassa HOM05D002695 ORTHO05D002964 4.1e-09 64.7 27 96.3
FAN24G0091 Fragaria x ananassa HOM05D002695 ORTHO05D002964 4.1e-09 64.7 27 96.3
Lj8C705G2 Lonicera japonica HOM05D002695 ORTHO05D002964 4.1e-09 64.7 27 96.3
Nn8g40760 Nelumbo nucifera HOM05D002695 ORTHO05D002964 4.1e-09 64.7 32 78.1
Peaxi162Scf01131g00013 Petunia axillaris HOM05D002695 ORTHO05D002964 4.1e-09 64.7 33 78.8
Potri.006G256000 Populus trichocarpa HOM05D002695 ORTHO05D002964 4.1e-09 64.7 27 96.3
Potri.018G026000 Populus trichocarpa HOM05D002695 ORTHO05D002964 4.1e-09 64.7 27 96.3
RcHm_v2.0_Chr6g0297751 Rosa chinensis HOM05D002695 ORTHO05D002964 4.1e-09 64.7 27 96.3
Sabra06G0200300 Salix brachista HOM05D002695 ORTHO05D002964 4.1e-09 64.7 27 96.3
Sabra18G0028500 Salix brachista HOM05D002695 ORTHO05D002964 4.1e-09 64.7 27 96.3
GSVIVG01035873001 Vitis vinifera HOM05D002695 ORTHO05D002964 4.1e-09 64.7 31 83.9
Aa31LG8G3090 Aethionema arabicum HOM05D002695 ORTHO05D002964 7.0e-09 63.9 87 42.5
arahy.Tifrunner.gnm1.ann1.DLQB4B Arachis hypogaea HOM05D002695 ORTHO05D002964 7.0e-09 63.9 31 83.9
arahy.Tifrunner.gnm1.ann1.HPR99D Arachis hypogaea HOM05D002695 ORTHO05D002964 7.0e-09 63.9 31 83.9
Migut.I00753 Erythranthe guttata HOM05D002695 ORTHO05D002964 7.0e-09 63.9 89 41.6
Gohir.D10G078100 Gossypium hirsutum HOM05D002695 ORTHO05D002964 7.0e-09 63.9 86 40.7
Gorai.011G084800 Gossypium raimondii HOM05D002695 ORTHO05D002964 7.0e-09 63.9 86 40.7
TWI75G1220 Tripterygium wilfordii HOM05D002695 ORTHO05D002964 7.0e-09 63.9 86 45.3
Ah.10g035780 Amaranthus hybridus HOM05D002695 ORTHO05D002964 9.2e-09 63.5 31 77.4
AL4G16780 Arabidopsis lyrata HOM05D002695 ORTHO05D002964 9.2e-09 63.5 30 86.7
Ciclev10024984m.g Citrus clementina HOM05D002695 ORTHO05D002964 9.2e-09 63.5 86 40.7
Glyma.04G065700 Glycine max HOM05D002695 ORTHO05D002964 9.2e-09 63.5 30 86.7
HanXRQChr16g0510741 Helianthus annuus HOM05D002695 ORTHO05D002964 9.2e-09 63.5 27 92.6
Lj1g0011228 Lotus japonicus HOM05D002695 ORTHO05D002964 9.2e-09 63.5 30 86.7
MBI15_g32305_MAGBIO Magnolia biondii HOM05D002695 ORTHO05D002964 9.2e-09 63.5 31 77.4
Medtr3g106770 Medicago truncatula HOM05D002695 ORTHO05D002964 9.2e-09 63.5 30 86.7
Phvul.009G092100 Phaseolus vulgaris HOM05D002695 ORTHO05D002964 9.2e-09 63.5 30 86.7
Psat5g029320 Pisum sativum HOM05D002695 ORTHO05D002964 9.2e-09 63.5 30 86.7
Sc10g0006020 Simmondsia chinensis HOM05D002695 ORTHO05D002964 9.2e-09 63.5 27 92.6
THA.LOC104818613 Tarenaya hassleriana HOM05D002695 ORTHO05D002964 9.2e-09 63.5 31 83.9
TPR.G3158 Trifolium pratense HOM05D002695 ORTHO05D002964 9.2e-09 63.5 30 86.7
VMungo1309G2073 Vigna mungo HOM05D002695 ORTHO05D002964 9.2e-09 63.5 30 86.7
Actinidia14600 Actinidia chinensis HOM05D002695 ORTHO05D002964 1.2e-08 63.2 27 92.6
Aqoxy7G03638 Aquilegia oxysepala HOM05D002695 ORTHO05D002964 1.2e-08 63.2 27 92.6
Migut.A00032 Erythranthe guttata HOM05D002695 ORTHO05D002964 1.2e-08 63.2 30 83.3
Nitab4.5_0003463g0020 Nicotiana tabacum HOM05D002695 ORTHO05D002964 1.2e-08 63.2 34 76.5
Nitab4.5_0008560g0020 Nicotiana tabacum HOM05D002695 ORTHO05D002964 1.2e-08 63.2 34 76.5
SGA_v2.0_scaffold20G09108 Striga asiatica HOM05D002695 ORTHO05D002964 1.2e-08 63.2 30 83.3
TAR625G0440 Trochodendron aralioides HOM05D002695 ORTHO05D002964 1.2e-08 63.2 32 75.0
A03p61250 Brassica napus HOM05D002695 ORTHO05D002964 1.6e-08 62.8 30 86.7
C07p59100 Brassica napus HOM05D002695 ORTHO05D002964 1.6e-08 62.8 30 86.7
BolC7t46358H Brassica oleracea HOM05D002695 ORTHO05D002964 1.6e-08 62.8 30 86.7
BraA03t15169Z Brassica rapa HOM05D002695 ORTHO05D002964 1.6e-08 62.8 30 86.7
Hma1.2p1_0043F.1_g025850 Hydrangea macrophylla HOM05D002695 ORTHO05D002964 1.6e-08 62.8 26 96.2
Hund04504 Selenicereus undatus HOM05D002695 ORTHO05D002964 1.6e-08 62.8 32 75.0
Hund25561 Selenicereus undatus HOM05D002695 ORTHO05D002964 1.6e-08 62.8 31 77.4
Cc08_g00480 Coffea canephora HOM05D002695 ORTHO05D002964 2.0e-08 62.4 27 88.9
MD15G1126500 Malus domestica HOM05D002695 ORTHO05D002964 2.0e-08 62.4 30 83.3
TWI34G0457 Tripterygium wilfordii HOM05D002695 ORTHO05D002964 2.0e-08 62.4 31 80.6
Rhsim08G0212100 Rhododendron simsii HOM05D002695 ORTHO05D002964 2.7e-08 62.0 27 88.9
MSTRG.11149 Avicennia marina HOM05D002695 ORTHO05D002964 3.5e-08 61.6 89 41.6
Ciclev10007589m.g Citrus clementina HOM05D002695 ORTHO05D002964 3.5e-08 61.6 27 92.6
Lsat_1_v5_gn_5_30220 Lactuca sativa HOM05D002695 ORTHO05D002964 3.5e-08 61.6 26 92.3
PSO210G1992 Papaver somniferum HOM05D002695 ORTHO05D002964 3.5e-08 61.6 26 92.3
PSO210G7357 Papaver somniferum HOM05D002695 ORTHO05D002964 3.5e-08 61.6 26 92.3
unitig_748.g7554 Utricularia gibba HOM05D002695 ORTHO05D002964 3.5e-08 61.6 30 80.0
EL10Ac2g04199 Beta vulgaris HOM05D002695 ORTHO05D002964 4.5e-08 61.2 31 77.4
vmacro05172 Vaccinium macrocarpon HOM05D002695 ORTHO05D002964 4.5e-08 61.2 26 92.3
FAN27G2745 Fragaria x ananassa HOM05D002695 ORTHO05D002964 5.9e-08 60.8 27 92.6
SEGI_30554 Sequoiadendron giganteum HOM05D002695 ORTHO05D002964 5.9e-08 60.8 27 92.6
SEGI_31771 Sequoiadendron giganteum HOM05D002695 ORTHO05D002964 5.9e-08 60.8 27 92.6
HPP92_023796 Vanilla planifolia HOM05D002695 ORTHO05D002964 5.9e-08 60.8 30 80.0
CAN.G407.71 Capsicum annuum HOM05D002695 ORTHO05D002964 7.8e-08 60.5 30 80.0
ECA246G1400 Erigeron canadensis HOM05D002695 ORTHO05D002964 7.8e-08 60.5 27 88.9
Lalb_Chr11g0063681 Lupinus albus HOM05D002695 ORTHO05D002964 7.8e-08 60.5 30 83.3
Peaxi162Scf00332g00539 Petunia axillaris HOM05D002695 ORTHO05D002964 7.8e-08 60.5 27 88.9
Zm00001eb387110 Zea mays HOM05D002695 ORTHO05D002964 7.8e-08 60.5 26 88.5
Actinidia15751 Actinidia chinensis HOM05D002695 ORTHO05D002964 1.0e-07 60.1 26 88.5
SHI11230 Sapria himalayana HOM05D002695 ORTHO05D002964 1.0e-07 60.1 104 35.6
Oeu060147.1 Olea europaea HOM05D002695 ORTHO05D002964 1.3e-07 59.7 27 88.9
Solyc03g116830.4 Solanum lycopersicum HOM05D002695 ORTHO05D002964 1.3e-07 59.7 34 70.6
PGSC0003DMG400000644 Solanum tuberosum HOM05D002695 ORTHO05D002964 1.3e-07 59.7 34 70.6
CSS0040579 Camellia sinensis var. sinensis HOM05D002695 ORTHO05D002964 1.7e-07 59.3 86 38.4
Glyma.06G067100 Glycine max HOM05D002695 ORTHO05D002964 1.7e-07 59.3 29 86.2
Lalb_Chr23g0268461 Lupinus albus HOM05D002695 ORTHO05D002964 1.7e-07 59.3 29 86.2
Nitab4.5_0002042g0030 Nicotiana tabacum HOM05D002695 ORTHO05D002964 1.7e-07 59.3 27 85.2
TWI12G0825 Tripterygium wilfordii HOM05D002695 ORTHO05D002964 5.0e-07 57.8 30 80.0
Lj1C756G2 Lonicera japonica HOM05D002695 ORTHO05D002964 8.6e-07 57.0 24 91.7
Solyc08g042130.2 Solanum lycopersicum HOM05D002695 ORTHO05D002964 1.1e-06 56.6 30 73.3
Sopen08g012640 Solanum pennellii HOM05D002695 ORTHO05D002964 1.1e-06 56.6 30 73.3
vmacro19008 Vaccinium macrocarpon HOM05D002695 ORTHO05D002964 1.1e-06 56.6 26 84.6
Oeu010900.1 Olea europaea HOM05D002695 ORTHO05D002964 1.5e-06 56.2 26 84.6
Lalb_Chr22g0350831 Lupinus albus HOM05D002695 ORTHO05D002964 1.9e-06 55.8 31 74.2
Pp3c1_14920 Physcomitrium patens HOM05D002695 ORTHO05D002964 1.9e-06 55.8 30 76.7
Sopen03g035750 Solanum pennellii HOM05D002695 ORTHO05D002964 1.9e-06 55.8 32 71.9
Os06g0643000 Oryza sativa ssp. japonica HOM05D002695 ORTHO05D002964 2.5e-06 55.5 26 80.8
DCAR_001533 Daucus carota HOM05D002695 ORTHO05D002964 3.3e-06 55.1 27 81.5
DCAR_021351 Daucus carota HOM05D002695 ORTHO05D002964 3.3e-06 55.1 87 40.2
Lsat_1_v5_gn_4_87620 Lactuca sativa HOM05D002695 ORTHO05D002964 5.6e-06 54.3 26 84.6
Mapoly0035s0138 Marchantia polymorpha HOM05D002695 ORTHO05D002964 5.6e-06 54.3 30 73.3
Pp3c2_21590 Physcomitrium patens HOM05D002695 ORTHO05D002964 5.6e-06 54.3 30 73.3
SHI18543 Sapria himalayana HOM05D002695 ORTHO05D002964 5.6e-06 54.3 25 84.0
Cc04_g04510 Coffea canephora HOM05D002695 ORTHO05D002964 9.5e-06 53.5 90 38.9


User provided reference genes

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