Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 3.3e-164 581.6 296 100.0
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 3.8e-160 568.2 296 97.6
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 5.5e-151 537.7 296 90.5
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 5.5e-151 537.7 296 91.9
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 4.7e-150 534.6 296 90.2
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 6.1e-150 534.3 296 89.9
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 1.4e-149 533.1 294 90.1
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 3.0e-149 531.9 296 90.2
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 5.2e-149 531.2 295 90.8
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 1.1e-148 530.0 296 88.9
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.5e-148 529.6 296 88.9
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 2.0e-148 529.3 294 89.5
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 2.6e-148 528.9 296 89.9
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 2.6e-148 528.9 296 88.2
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 3.3e-148 528.5 296 87.8
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 4.4e-148 528.1 296 89.2
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 1.3e-147 526.6 296 88.2
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 1.7e-147 526.2 296 88.9
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 2.8e-147 525.4 296 88.2
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 6.3e-147 524.2 296 88.2
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 6.3e-147 524.2 296 88.9
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.1e-146 523.5 296 88.2
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 1.1e-146 523.5 296 88.5
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 1.4e-146 523.1 295 87.5
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 1.8e-146 522.7 296 88.5
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 5.3e-146 521.2 296 86.1
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 5.3e-146 521.2 295 87.1
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 5.3e-146 521.2 295 87.5
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 7.0e-146 520.8 295 87.1
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 9.1e-146 520.4 296 87.8
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 1.2e-145 520.0 296 86.8
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.6e-145 519.6 295 87.8
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 1.6e-145 519.6 296 86.8
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 2.0e-145 519.2 297 87.5
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 2.7e-145 518.8 296 85.8
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 1.0e-144 516.9 297 86.9
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.0e-144 516.9 296 87.5
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 2.2e-144 515.8 296 85.5
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 2.2e-144 515.8 297 86.5
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 2.2e-144 515.8 297 86.5
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 2.2e-144 515.8 294 87.4
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 2.9e-144 515.4 296 85.8
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 3.8e-144 515.0 296 85.1
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 5.0e-144 514.6 295 86.1
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 8.5e-144 513.8 296 83.1
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 8.5e-144 513.8 296 84.8
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 8.5e-144 513.8 296 85.8
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 1.1e-143 513.5 296 85.1
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 1.5e-143 513.1 296 85.1
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 1.9e-143 512.7 296 85.8
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 1.9e-143 512.7 297 86.2
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 3.2e-143 511.9 296 84.5
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 4.2e-143 511.5 296 85.1
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 4.2e-143 511.5 295 85.8
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 4.2e-143 511.5 295 85.8
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 4.2e-143 511.5 296 84.5
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 5.5e-143 511.1 296 87.5
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 7.2e-143 510.8 296 84.5
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 7.2e-143 510.8 296 84.8
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 9.4e-143 510.4 296 84.1
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.6e-142 509.6 295 85.4
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 1.6e-142 509.6 296 83.4
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 1.6e-142 509.6 296 83.8
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 2.1e-142 509.2 296 84.8
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 2.1e-142 509.2 296 85.8
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 2.7e-142 508.8 296 83.4
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 4.7e-142 508.1 296 84.5
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 4.7e-142 508.1 296 83.4
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 6.1e-142 507.7 296 83.8
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 8.0e-142 507.3 296 83.8
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.0e-141 506.9 296 83.1
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 1.0e-141 506.9 296 83.4
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 1.4e-141 506.5 296 82.4
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 2.3e-141 505.8 296 84.8
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 3.0e-141 505.4 296 83.4
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 4.0e-141 505.0 295 82.7
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 6.8e-141 504.2 296 83.1
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 8.8e-141 503.8 295 83.7
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 1.5e-140 503.1 296 83.8
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 2.0e-140 502.7 296 84.5
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 2.6e-140 502.3 296 82.8
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 3.4e-140 501.9 296 83.4
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 3.4e-140 501.9 296 83.4
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 1.7e-139 499.6 296 80.7
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 2.8e-139 498.8 296 80.4
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 4.8e-139 498.0 296 80.1
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 6.3e-139 497.7 302 82.1
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 1.1e-138 496.9 296 80.7
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 1.1e-138 496.9 296 81.8
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 1.8e-138 496.1 296 81.4
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 3.1e-138 495.4 298 82.2
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 3.1e-138 495.4 298 82.2
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 4.1e-138 495.0 296 79.7
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 4.1e-138 495.0 296 81.8
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 1.2e-137 493.4 295 81.0
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 1.6e-137 493.0 296 81.1
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 1.6e-137 493.0 296 81.1
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 1.6e-137 493.0 296 81.1
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 1.6e-137 493.0 296 81.1
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 1.6e-137 493.0 296 81.1
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 1.6e-137 493.0 296 80.7
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 1.6e-137 493.0 296 80.7
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 1.6e-137 493.0 296 80.7
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 2.0e-137 492.7 296 80.7
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 2.0e-137 492.7 296 80.4
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 2.0e-137 492.7 296 80.4
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 3.5e-137 491.9 296 80.4
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 3.5e-137 491.9 296 80.1
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 3.5e-137 491.9 296 80.4
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 4.5e-137 491.5 296 80.4
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 7.7e-137 490.7 296 80.1
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 7.7e-137 490.7 282 85.8
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 1.0e-136 490.3 296 80.1
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 1.7e-136 489.6 296 79.7
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 2.9e-136 488.8 309 80.6
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 1.1e-135 486.9 296 79.4
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 1.5e-135 486.5 296 79.4
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 4.2e-135 485.0 296 79.7
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 4.2e-135 485.0 296 79.7
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 5.5e-135 484.6 296 80.4
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 3.6e-134 481.9 296 79.1
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 1.4e-133 479.9 296 77.7
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 1.4e-133 479.9 282 83.7
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 1.4e-133 479.9 282 83.7
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 3.0e-133 478.8 296 78.4
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 9.5e-127 457.2 255 88.6
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 2.1e-126 456.1 296 75.3
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 2.0e-124 449.5 296 76.4
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 4.3e-119 431.8 295 69.8
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 1.4e-114 416.8 296 67.9
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 6.0e-113 411.4 325 66.5
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 4.9e-107 391.7 296 65.2
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 6.0e-105 384.8 296 68.2
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 9.2e-98 360.9 209 82.3
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 2.7e-65 253.1 296 44.9
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 2.5e-63 246.5 228 58.8
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 2.1e-62 243.4 308 42.9
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 5.0e-59 232.3 147 81.6
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 1.0e-56 224.6 188 55.9
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 7.4e-55 218.4 297 40.7
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 2.2e-54 216.9 129 79.1
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 3.7e-54 216.1 185 57.8
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 2.4e-53 213.4 125 80.8
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 4.5e-52 209.1 120 81.7
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 2.3e-48 196.8 125 76.8
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 5.3e-45 185.7 104 85.6
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 5.0e-43 179.1 200 54.5
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 3.2e-34 149.8 95 75.8
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 6.1e-33 145.6 85 87.1
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 7.5e-31 138.7 307 31.6
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 4.5e-28 129.4 108 54.6
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 8.5e-27 125.2 176 46.0
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 1.2e-23 114.8 149 49.7
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 9.8e-23 111.7 121 56.2
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 5.0e-19 99.4 63 79.4
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 5.0e-19 99.4 82 57.3
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 1.6e-17 94.4 53 81.1
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 1.4e-16 91.3 59 74.6
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 1.3e-14 84.7 59 69.5
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 2.8e-14 83.6 59 69.5


User provided reference genes

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