Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 0.0e+00 1321.6 665 100.0
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1251.5 658 95.1
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1125.2 658 85.3
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 1.3e-309 1065.8 659 81.2
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 4.2e-300 1034.2 660 78.3
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 1.7e-296 1022.3 659 76.5
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 4.5e-294 1014.2 659 76.2
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 1.3e-293 1012.7 659 75.1
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 5.0e-293 1010.7 659 75.3
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 8.8e-290 1000.0 659 74.7
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 2.6e-289 998.4 659 75.6
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 2.2e-288 995.3 659 75.0
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 6.3e-288 993.8 659 74.4
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 1.8e-287 992.3 659 75.0
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 2.9e-285 984.9 659 73.1
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 1.1e-284 983.0 659 73.4
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 1.5e-284 982.6 659 73.0
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 4.2e-284 981.1 659 73.7
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 3.6e-283 978.0 659 73.6
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 6.1e-283 977.2 659 72.7
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 1.0e-282 976.5 658 72.2
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.8e-282 975.7 659 73.4
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 3.0e-282 974.9 659 73.0
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 2.0e-281 972.2 659 73.0
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 4.4e-281 971.1 659 72.5
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 8.3e-280 966.8 666 72.8
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 8.3e-280 966.8 659 72.2
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 1.8e-279 965.7 659 72.1
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 2.4e-279 965.3 659 71.6
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 2.4e-279 965.3 659 72.2
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 7.0e-279 963.8 659 72.1
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.2e-278 963.0 659 72.5
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 3.5e-278 961.4 659 72.1
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 4.5e-278 961.1 659 71.9
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 4.5e-278 961.1 659 70.7
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 5.0e-277 957.6 659 72.1
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 1.1e-276 956.4 659 73.4
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 1.5e-276 956.1 659 71.3
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 1.9e-276 955.7 658 71.6
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 1.9e-276 955.7 660 71.7
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 2.5e-276 955.3 659 73.3
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.4e-274 949.5 659 71.0
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 2.3e-274 948.7 648 73.6
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 2.3e-274 948.7 659 71.0
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 3.0e-274 948.3 659 71.2
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 5.2e-274 947.6 659 70.9
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 9.8e-273 943.3 659 70.3
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 1.3e-272 943.0 659 70.4
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.7e-272 942.6 659 72.7
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 2.8e-272 941.8 659 70.3
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 4.9e-272 941.0 659 70.9
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 1.1e-271 939.9 659 69.7
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 1.4e-271 939.5 659 69.5
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 2.4e-271 938.7 682 69.1
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 9.2e-271 936.8 660 72.0
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 7.8e-270 933.7 668 70.2
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 1.0e-269 933.3 658 69.0
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 2.3e-269 932.2 659 71.6
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 9.5e-268 926.8 659 69.3
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 4.9e-264 914.4 659 67.1
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 1.4e-263 912.9 659 67.8
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 5.4e-263 911.0 658 66.7
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 6.6e-261 904.0 659 65.9
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 6.6e-261 904.0 659 68.1
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 6.6e-261 904.0 661 67.8
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 6.2e-259 897.5 659 66.8
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 8.0e-259 897.1 659 67.7
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 3.1e-258 895.2 660 67.1
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 3.1e-258 895.2 659 66.6
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 8.9e-258 893.6 659 66.9
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 1.2e-257 893.3 659 65.1
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 2.6e-257 892.1 659 66.8
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 2.6e-257 892.1 659 67.2
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 4.4e-257 891.3 660 66.8
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 1.7e-256 889.4 659 65.9
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 2.2e-256 889.0 659 67.2
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 2.2e-256 889.0 659 65.6
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 3.7e-256 888.3 659 65.7
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 1.1e-255 886.7 659 66.9
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 1.1e-255 886.7 659 66.0
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 1.1e-255 886.7 662 65.4
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 4.1e-255 884.8 659 66.5
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 4.1e-255 884.8 659 66.3
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 4.1e-255 884.8 659 65.1
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 7.0e-255 884.0 659 65.7
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 7.0e-255 884.0 659 66.2
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 9.2e-255 883.6 659 66.0
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 3.5e-254 881.7 660 65.8
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 3.5e-254 881.7 677 63.2
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 6.0e-254 880.9 659 66.9
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 2.3e-253 879.0 659 65.1
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 3.0e-253 878.6 659 65.7
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 8.6e-253 877.1 679 65.2
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 1.1e-252 876.7 657 65.1
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 3.3e-252 875.2 657 64.7
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 3.3e-252 875.2 659 65.4
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 7.3e-252 874.0 674 65.3
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 2.1e-251 872.5 660 66.1
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 3.6e-251 871.7 660 66.7
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 4.7e-251 871.3 660 66.1
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 1.4e-250 869.8 659 65.6
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 1.4e-250 869.8 660 64.4
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 2.3e-250 869.0 657 64.4
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 1.3e-248 863.2 657 63.8
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 6.4e-248 860.9 657 63.2
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 1.4e-247 859.8 674 64.1
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 3.2e-247 858.6 682 62.5
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 9.2e-247 857.1 658 64.1
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 1.2e-246 856.7 659 65.1
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 3.9e-245 851.7 723 58.8
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 1.9e-244 849.4 686 63.3
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 2.0e-241 839.3 662 64.0
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 3.5e-238 828.6 660 62.7
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 3.0e-237 825.5 659 63.1
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 3.9e-237 825.1 659 63.3
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 5.6e-236 821.2 658 62.6
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 3.6e-235 818.5 658 61.1
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 1.6e-230 803.1 614 64.3
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 3.4e-225 785.4 674 60.1
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 8.1e-219 764.2 658 56.5
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 1.3e-216 756.9 659 60.1
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 2.2e-216 756.1 554 67.1
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 6.2e-211 738.0 659 54.3
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 6.5e-208 728.0 659 53.6
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 4.2e-199 698.7 602 57.6
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.4e-191 673.7 554 59.9
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 1.3e-187 660.6 659 52.8
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 7.7e-177 624.8 516 60.5
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 2.8e-163 579.7 672 46.4
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 9.5e-159 564.7 673 46.2
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.3e-152 543.5 388 70.1
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 5.2e-141 505.8 669 40.8
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 7.8e-137 491.9 662 42.1
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 8.9e-133 478.4 677 43.4
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 2.9e-115 420.2 257 80.9
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.9e-114 417.5 300 70.7
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 7.9e-105 385.6 247 73.7
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 1.0e-96 358.6 319 58.0
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.4e-93 348.2 257 68.1
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-91 340.9 717 33.3
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 5.3e-85 319.7 362 50.3
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 5.9e-84 316.2 344 47.7
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 1.0e-80 305.4 451 43.5
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 2.0e-79 301.2 659 33.2
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 5.1e-72 276.6 275 53.1
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 4.8e-62 243.4 236 53.0
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 5.9e-44 183.3 712 24.6
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 1.8e-40 171.8 101 78.2
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 4.0e-40 170.6 101 78.2
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 4.0e-40 170.6 101 78.2
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 9.8e-39 166.0 688 26.7
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 1.8e-32 145.2 81 80.2
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 3.2e-21 107.8 70 70.0
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 5.1e-19 100.5 122 45.1
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 1.5e-18 99.0 188 38.8
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 3.3e-18 97.8 62 74.2
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 5.8e-15 87.0 137 38.7
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 1.7e-14 85.5 47 78.7
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 5.1e-11 73.9 39 87.2
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 1.1e-10 72.8 47 72.3
Psat1g107320 Pisum sativum HOM05D001108 ORTHO05D001619 2.8e-09 68.2 122 35.2
Psat6g121640 Pisum sativum HOM05D000840 ORTHO05D000670 1.4e-08 65.9 68 48.5
Psat0s4854g0040 Pisum sativum HOM05D001108 ORTHO05D001619 1.8e-08 65.5 115 34.8
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 6.8e-08 63.5 40 75.0
Ah.04g157730 Amaranthus hybridus HOM05D031501 ORTHO05D060762 1.7e-06 58.9 36 80.6


User provided reference genes

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