Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 3.8e-96 354.8 172 100.0
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 3.8e-35 152.1 185 50.3
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 4.9e-35 151.8 191 50.8
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 5.7e-31 138.3 195 45.1
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 5.7e-31 138.3 195 45.1
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 9.7e-31 137.5 233 41.6
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 2.2e-30 136.3 184 44.6
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 2.8e-30 136.0 188 45.7
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 4.8e-30 135.2 195 43.6
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 6.3e-30 134.8 199 44.2
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 1.4e-29 133.7 178 45.5
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 1.8e-29 133.3 177 46.9
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 1.8e-29 133.3 227 40.5
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 2.4e-29 132.9 204 43.1
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 4.1e-29 132.1 179 45.3
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 5.3e-29 131.7 180 45.6
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 6.9e-29 131.3 204 43.1
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 9.0e-29 131.0 183 43.7
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 9.0e-29 131.0 177 45.2
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 1.2e-28 130.6 217 42.9
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 1.2e-28 130.6 204 42.2
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 1.5e-28 130.2 211 42.2
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 1.5e-28 130.2 180 44.4
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 1.5e-28 130.2 204 42.6
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 1.5e-28 130.2 180 43.9
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 2.0e-28 129.8 199 42.7
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 2.6e-28 129.4 227 39.6
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 2.6e-28 129.4 225 41.3
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 3.4e-28 129.0 178 46.6
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 5.9e-28 128.3 179 44.1
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 7.6e-28 127.9 221 40.3
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 7.6e-28 127.9 179 44.7
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 1.0e-27 127.5 180 43.9
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 1.0e-27 127.5 178 45.5
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.7e-27 126.7 177 45.8
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 1.7e-27 126.7 199 42.2
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 1.7e-27 126.7 228 38.6
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 2.2e-27 126.3 225 40.0
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.9e-27 125.9 201 42.3
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 2.9e-27 125.9 179 42.5
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 2.9e-27 125.9 210 43.3
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 6.5e-27 124.8 177 44.6
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 6.5e-27 124.8 227 38.8
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 8.5e-27 124.4 180 45.0
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 8.5e-27 124.4 178 43.3
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 1.1e-26 124.0 201 41.3
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 1.9e-26 123.2 201 41.3
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 1.9e-26 123.2 201 41.3
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 1.9e-26 123.2 196 40.8
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 1.9e-26 123.2 215 39.1
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 2.5e-26 122.9 201 41.3
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 2.5e-26 122.9 201 41.3
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 2.5e-26 122.9 201 41.3
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 2.5e-26 122.9 201 40.8
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 2.5e-26 122.9 196 40.3
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 5.5e-26 121.7 201 41.3
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 5.5e-26 121.7 198 40.9
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 7.2e-26 121.3 201 41.3
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 9.3e-26 120.9 224 39.3
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 9.3e-26 120.9 232 38.4
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 2.7e-25 119.4 180 41.1
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 2.7e-25 119.4 201 41.3
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 6.1e-25 118.2 210 38.6
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.3e-24 117.1 201 40.8
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 1.3e-24 117.1 191 40.8
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 1.8e-24 116.7 180 41.1
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 2.3e-24 116.3 183 41.0
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 3.0e-24 115.9 199 39.2
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 3.0e-24 115.9 234 36.3
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 5.1e-24 115.2 176 42.0
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 8.7e-24 114.4 201 39.3
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 1.1e-23 114.0 177 41.2
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 1.5e-23 113.6 166 45.2
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 1.9e-23 113.2 177 40.7
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 4.3e-23 112.1 180 40.0
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 4.3e-23 112.1 199 39.2
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 7.4e-23 111.3 206 38.3
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 7.4e-23 111.3 229 38.4
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 9.7e-23 110.9 180 39.4
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 2.8e-22 109.4 176 39.8
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 6.3e-22 108.2 182 40.1
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 1.1e-21 107.5 180 40.6
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 1.1e-21 107.5 182 40.1
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 1.8e-21 106.7 180 37.2
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 3.1e-21 105.9 213 34.3
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 4.1e-21 105.5 181 38.7
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 6.9e-21 104.8 178 38.8
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 9.1e-21 104.4 158 41.8
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 9.1e-21 104.4 217 34.6
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 1.2e-20 104.0 193 38.9
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 7.7e-20 101.3 195 40.0
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 2.9e-19 99.4 178 36.0
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 3.8e-19 99.0 218 33.5
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 6.5e-19 98.2 176 37.5
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 1.4e-18 97.1 202 34.7
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 1.9e-18 96.7 199 34.7
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 3.2e-18 95.9 198 34.8
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 4.2e-18 95.5 203 34.5
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 4.2e-18 95.5 177 38.4
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 1.2e-17 94.0 180 34.4
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 2.7e-17 92.8 177 35.6
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 3.6e-17 92.4 201 34.3
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 3.6e-17 92.4 151 38.4
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 6.1e-17 91.7 177 36.2
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 1.4e-16 90.5 180 33.3
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 1.4e-16 90.5 177 35.0
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 1.8e-16 90.1 180 33.3
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.8e-16 90.1 177 34.5
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 2.3e-16 89.7 198 32.8
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 2.3e-16 89.7 163 36.2
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 3.9e-16 89.0 180 33.9
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 6.7e-16 88.2 185 31.9
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 6.7e-16 88.2 181 38.1
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 8.8e-16 87.8 178 33.7
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 8.8e-16 87.8 199 33.2
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 8.8e-16 87.8 125 44.8
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 4.4e-15 85.5 176 34.7
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 9.7e-15 84.3 178 32.0
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 9.7e-15 84.3 178 32.0
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 9.7e-15 84.3 83 53.0
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.7e-14 83.6 182 33.0
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 1.7e-14 83.6 177 32.8
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 2.2e-14 83.2 185 32.4
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 2.8e-14 82.8 179 31.8
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 1.4e-13 80.5 83 47.0
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.8e-13 80.1 178 32.6
FAN18G2309 Fragaria x ananassa HOM05D003990 ORTHO05D004925 5.3e-13 78.6 48 79.2
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 5.3e-13 78.6 82 51.2
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 5.3e-13 78.6 74 54.1
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 1.5e-12 77.0 168 31.5
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.5e-12 77.0 83 44.6
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 1.3e-11 73.9 83 48.2
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 2.9e-11 72.8 135 37.0
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 5.0e-11 72.0 83 42.2
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 1.1e-10 70.9 76 47.4
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 1.4e-10 70.5 159 33.3
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 5.5e-10 68.6 82 46.3
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.6e-09 67.0 147 34.0
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 1.6e-09 67.0 129 31.8
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 1.6e-09 67.0 129 31.8
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 1.6e-09 67.0 150 31.3
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 2.1e-09 66.6 178 28.1
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.1e-09 66.6 178 28.1
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 3.6e-09 65.9 50 72.0
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.0e-08 64.3 150 30.0
unitig_52.g17197 Utricularia gibba HOM05D003990 ORTHO05D004925 1.0e-08 64.3 43 74.4
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 5.2e-08 62.0 76 47.4
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 8.8e-08 61.2 170 29.4
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 8.8e-08 61.2 170 29.4
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 3.3e-07 59.3 150 27.3
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.7e-06 57.0 82 36.6


User provided reference genes

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