Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16403 Corylus avellana HOM05D006908 ORTHO05D008662 2.9e-199 698.4 346 100.0
QL05p023344 Quercus lobata HOM05D006908 ORTHO05D008662 1.5e-144 516.5 334 75.4
CiPaw.01G238600 Carya illinoinensis HOM05D006908 ORTHO05D008662 4.8e-138 495.0 333 73.9
Cfa002075 Carpinus fangiana HOM05D006908 ORTHO05D008662 1.8e-132 476.5 254 94.1
MD17G1194300 Malus domestica HOM05D006908 ORTHO05D008662 1.8e-129 466.5 336 69.6
Sabra01G0145800 Salix brachista HOM05D006908 ORTHO05D008662 1.1e-123 447.2 337 65.3
Hma1.2p1_0323F.1_g125120 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 3.3e-123 445.7 332 65.7
Thecc.06G089400 Theobroma cacao HOM05D006908 ORTHO05D008662 1.7e-122 443.4 327 67.3
Dinv38042 Davidia involucrata HOM05D006908 ORTHO05D008662 8.2e-122 441.0 331 67.1
FAN09G3067 Fragaria x ananassa HOM05D006908 ORTHO05D008662 1.1e-121 440.7 327 67.3
RcHm_v2.0_Chr2g0138011 Rosa chinensis HOM05D006908 ORTHO05D008662 1.1e-121 440.7 335 66.3
GSVIVG01017098001 Vitis vinifera HOM05D006908 ORTHO05D008662 1.1e-121 440.7 321 67.6
FAN05G1986 Fragaria x ananassa HOM05D006908 ORTHO05D008662 1.4e-121 440.3 330 66.7
FvH4_6g31280 Fragaria vesca HOM05D006908 ORTHO05D008662 6.9e-121 438.0 325 68.3
Atru.chr1.3281 Acer truncatum HOM05D006908 ORTHO05D008662 5.0e-119 431.8 324 64.5
Gorai.006G098400 Gossypium raimondii HOM05D006908 ORTHO05D008662 6.5e-119 431.4 324 64.5
Duzib160G0703 Durio zibethinus HOM05D006908 ORTHO05D008662 1.4e-118 430.3 323 65.9
Prupe.3G070300 Prunus persica HOM05D006908 ORTHO05D008662 1.9e-118 429.9 338 66.0
Lj5C59T9 Lonicera japonica HOM05D006908 ORTHO05D008662 2.1e-117 426.4 319 64.3
COL.COLO4_30388 Corchorus olitorius HOM05D006908 ORTHO05D008662 1.0e-116 424.1 325 65.2
Rhsim08G0222000 Rhododendron simsii HOM05D006908 ORTHO05D008662 6.7e-116 421.4 343 62.7
Lj3g0017668 Lotus japonicus HOM05D006908 ORTHO05D008662 1.3e-114 417.2 337 61.7
CANSAT56G3342 Cannabis sativa HOM05D006908 ORTHO05D008662 2.8e-114 416.0 327 62.1
TAR626G0624 Trochodendron aralioides HOM05D006908 ORTHO05D008662 6.3e-114 414.8 369 60.4
Actinidia01807 Actinidia chinensis HOM05D006908 ORTHO05D008662 1.1e-113 414.1 343 61.5
Ca_01120_v3 Cicer arietinum L. HOM05D006908 ORTHO05D008662 1.4e-113 413.7 333 62.8
PSO782G4818 Papaver somniferum HOM05D006908 ORTHO05D008662 1.6e-112 410.2 331 63.1
Eucgr.J02986 Eucalyptus grandis HOM05D006908 ORTHO05D008662 2.0e-112 409.8 318 65.1
DCAR_023055 Daucus carota HOM05D006908 ORTHO05D008662 5.9e-112 408.3 331 62.5
Manes.11G045900 Manihot esculenta HOM05D006908 ORTHO05D008662 1.7e-111 406.8 324 64.2
Nn8g39204 Nelumbo nucifera HOM05D006908 ORTHO05D008662 6.5e-111 404.8 322 64.3
Lalb_Chr22g0351301 Lupinus albus HOM05D006908 ORTHO05D008662 1.9e-110 403.3 320 60.9
Sc10g0007370 Simmondsia chinensis HOM05D006908 ORTHO05D008662 1.9e-110 403.3 333 60.4
Medtr2g102040 Medicago truncatula HOM05D006908 ORTHO05D008662 5.5e-110 401.7 335 60.3
ClCG07G013040 Citrullus lanatus HOM05D006908 ORTHO05D008662 1.6e-109 400.2 331 62.2
CsaV3_3G025130 Cucumis sativus L. HOM05D006908 ORTHO05D008662 3.6e-109 399.1 325 62.2
PGR102G2040 Punica granatum HOM05D006908 ORTHO05D008662 3.6e-109 399.1 318 61.0
ECA247G1365 Erigeron canadensis HOM05D006908 ORTHO05D008662 4.7e-109 398.7 330 61.2
vmacro18903 Vaccinium macrocarpon HOM05D006908 ORTHO05D008662 6.1e-109 398.3 381 55.9
TPR.G37174 Trifolium pratense HOM05D006908 ORTHO05D008662 1.8e-108 396.7 339 59.9
Cc04_g03340 Coffea canephora HOM05D006908 ORTHO05D008662 2.3e-108 396.4 341 60.1
MELO3C012958.2 Cucumis melo HOM05D006908 ORTHO05D008662 4.0e-108 395.6 325 61.5
PGSC0003DMG400005687 Solanum tuberosum HOM05D006908 ORTHO05D008662 1.2e-107 394.0 330 61.5
arahy.Tifrunner.gnm1.ann1.0IDI1A Arachis hypogaea HOM05D006908 ORTHO05D008662 4.4e-107 392.1 320 60.6
arahy.Tifrunner.gnm1.ann1.UK934I Arachis hypogaea HOM05D006908 ORTHO05D008662 4.4e-107 392.1 320 60.6
PSO063G2605 Papaver somniferum HOM05D006908 ORTHO05D008662 4.4e-107 392.1 330 60.6
Gohir.D09G082700 Gossypium hirsutum HOM05D006908 ORTHO05D008662 5.7e-107 391.7 324 60.5
MSTRG.11073 Avicennia marina HOM05D006908 ORTHO05D008662 9.7e-107 391.0 322 61.5
Glyma.15G014900 Glycine max HOM05D006908 ORTHO05D008662 1.3e-106 390.6 322 59.9
Sopen03g039000 Solanum pennellii HOM05D006908 ORTHO05D008662 1.3e-106 390.6 329 60.5
Oeu063957.2 Olea europaea HOM05D006908 ORTHO05D008662 1.7e-106 390.2 320 62.2
Ciclev10025928m.g Citrus clementina HOM05D006908 ORTHO05D008662 2.8e-106 389.4 354 57.3
VMungo1080G1808 Vigna mungo HOM05D006908 ORTHO05D008662 6.3e-106 388.3 327 60.2
Sed0021689 Sechium edule HOM05D006908 ORTHO05D008662 1.1e-105 387.5 330 60.3
Phvul.005G170700 Phaseolus vulgaris HOM05D006908 ORTHO05D008662 4.1e-105 385.6 337 57.6
HanXRQChr02g0032801 Helianthus annuus HOM05D006908 ORTHO05D008662 9.1e-105 384.4 328 60.1
Migut.I00872 Erythranthe guttata HOM05D006908 ORTHO05D008662 1.6e-104 383.6 323 60.1
CSS0010187 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 2.7e-104 382.9 287 66.9
CAN.G438.72 Capsicum annuum HOM05D006908 ORTHO05D008662 2.7e-104 382.9 323 61.3
Nitab4.5_0002308g0060 Nicotiana tabacum HOM05D006908 ORTHO05D008662 4.5e-104 382.1 326 61.3
EL10Ac9g22006 Beta vulgaris HOM05D006908 ORTHO05D008662 7.7e-104 381.3 336 58.6
SalBow2G2262 Salvia bowleyana HOM05D006908 ORTHO05D008662 2.2e-103 379.8 331 58.6
Hund06614 Selenicereus undatus HOM05D006908 ORTHO05D008662 4.2e-102 375.6 322 58.4
Potri.001G181200 Populus trichocarpa HOM05D006908 ORTHO05D008662 9.4e-102 374.4 284 66.2
TWI75G1463 Tripterygium wilfordii HOM05D006908 ORTHO05D008662 8.0e-101 371.3 326 60.4
Gohir.A09G082800 Gossypium hirsutum HOM05D006908 ORTHO05D008662 5.2e-100 368.6 327 57.8
Ah.01g005440 Amaranthus hybridus HOM05D006908 ORTHO05D008662 1.5e-99 367.1 321 57.6
HPP92_003725 Vanilla planifolia HOM05D006908 ORTHO05D008662 1.7e-98 363.6 319 56.4
Aqoxy7G01689 Aquilegia oxysepala HOM05D006908 ORTHO05D008662 2.4e-97 359.8 350 56.6
Psat5g298720 Pisum sativum HOM05D006908 ORTHO05D008662 2.7e-96 356.3 301 59.8
CDE02G0011 Ceratophyllum demersum HOM05D006908 ORTHO05D008662 1.0e-95 354.4 322 55.9
Solyc03g120130.4 Solanum lycopersicum HOM05D006908 ORTHO05D008662 1.3e-95 354.0 325 56.9
AUR62042927 Chenopodium quinoa HOM05D006908 ORTHO05D008662 2.3e-95 353.2 345 55.1
Aa31LG4G230 Aethionema arabicum HOM05D006908 ORTHO05D008662 2.5e-94 349.7 342 54.7
Sp5g35850 Schrenkiella parvula HOM05D006908 ORTHO05D008662 2.5e-94 349.7 320 55.9
THA.LOC104812520 Tarenaya hassleriana HOM05D006908 ORTHO05D008662 3.3e-94 349.4 346 53.8
Hma1.2p1_0323F.1_g125130 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 4.7e-93 345.5 332 55.4
Nitab4.5_0000671g0150 Nicotiana tabacum HOM05D006908 ORTHO05D008662 4.0e-92 342.4 340 55.0
Thhalv10018901m.g Eutrema salsugineum HOM05D006908 ORTHO05D008662 8.9e-92 341.3 329 53.8
Carub.0002s2758 Capsella rubella HOM05D006908 ORTHO05D008662 1.2e-91 340.9 322 53.7
CARHR074570 Cardamine hirsuta HOM05D006908 ORTHO05D008662 5.7e-91 338.6 326 54.3
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 4.9e-90 335.5 326 54.3
unitig_52.g17450 Utricularia gibba HOM05D006908 ORTHO05D008662 2.4e-89 333.2 319 54.2
AT1G79915 Arabidopsis thaliana HOM05D006908 ORTHO05D008662 9.2e-89 331.3 325 53.8
Zm00001eb275430 Zea mays HOM05D006908 ORTHO05D008662 4.5e-88 328.9 333 50.2
Os06g0639300 Oryza sativa ssp. japonica HOM05D006908 ORTHO05D008662 1.7e-87 327.0 330 50.6
C06p54330 Brassica napus HOM05D002960 ORTHO05D003632 4.3e-86 322.4 361 49.6
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 9.5e-86 321.2 323 53.9
BolC6t40444H Brassica oleracea HOM05D002960 ORTHO05D003632 9.5e-86 321.2 352 50.3
Peaxi162Scf00015g00453 Petunia axillaris HOM05D006908 ORTHO05D008662 1.6e-85 320.5 327 53.5
SEGI_13943 Sequoiadendron giganteum HOM05D006908 ORTHO05D008662 3.4e-83 312.8 352 48.0
Cpa.g.sc0.185 Carica papaya HOM05D006908 ORTHO05D008662 3.7e-82 309.3 217 70.0
BraA07t32051Z Brassica rapa HOM05D006908 ORTHO05D008662 4.9e-82 308.9 336 50.3
AUR62016450 Chenopodium quinoa HOM05D006908 ORTHO05D008662 1.9e-81 307.0 294 55.8
ATR0602G186 Amborella trichopoda HOM05D006908 ORTHO05D008662 4.6e-80 302.4 246 58.1
SHI10939 Sapria himalayana HOM05D006908 ORTHO05D008662 3.3e-78 296.2 252 59.1
MBI15_g13424_MAGBIO Magnolia biondii HOM05D006908 ORTHO05D008662 1.5e-75 287.3 269 58.0
A07p45490 Brassica napus HOM05D006908 ORTHO05D008662 2.3e-71 273.5 389 43.7
Mapoly0072s0004 Marchantia polymorpha HOM05D006908 ORTHO05D008662 5.1e-71 272.3 337 45.1
AagrBONN_evm.TU.Sc2ySwM_344.5185 Anthoceros agrestis HOM05D006908 ORTHO05D008662 4.1e-65 252.7 323 44.0
Lsat_1_v5_gn_1_35121 Lactuca sativa HOM05D006908 ORTHO05D008662 7.8e-64 248.4 220 59.1
CSS0029579 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 1.3e-63 247.7 183 65.0
AUR62033073 Chenopodium quinoa HOM05D006908 ORTHO05D008662 1.1e-62 244.6 288 48.6
Pp3c16_8290 Physcomitrium patens HOM05D006908 ORTHO05D008662 1.8e-60 237.3 297 41.8
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 2.3e-55 220.3 321 37.4
FAN02G3381 Fragaria x ananassa HOM05D006908 ORTHO05D008662 3.9e-55 219.5 229 52.8
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 1.2e-48 198.0 345 38.6
SGA_v2.0_scaffold37G14828 Striga asiatica HOM05D006908 ORTHO05D008662 2.1e-37 160.6 141 61.0
C09p24020 Brassica napus HOM05D006908 ORTHO05D008662 2.0e-35 154.1 186 45.7
SMO347G0515 Selaginella moellendorffii HOM05D006908 ORTHO05D008662 4.9e-34 149.4 205 42.9
Cpa.g.sc41.12 Carica papaya HOM05D006908 ORTHO05D008662 3.8e-26 123.2 84 69.0
AL2G41640 Arabidopsis lyrata HOM05D006908 ORTHO05D008662 2.7e-24 117.1 148 42.6
Actinidia32749 Actinidia chinensis HOM05D006908 ORTHO05D008662 1.1e-22 111.7 301 30.2
BolC9t55322H Brassica oleracea HOM05D006908 ORTHO05D008662 5.3e-20 102.8 94 54.3
FAN14G1268 Fragaria x ananassa HOM05D006908 ORTHO05D008662 1.9e-09 67.8 73 49.3
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 2.5e-09 67.4 198 28.3
TWI31G0384 Tripterygium wilfordii HOM05D002956 ORTHO05D008031 4.7e-08 63.2 211 23.7
Cre17.g747647 Chlamydomonas reinhardtii HOM05D002553 ORTHO05D002767 6.1e-08 62.8 219 29.2
Lalb_Chr09g0321491 Lupinus albus HOM05D006745 ORTHO05D008449 6.1e-08 62.8 206 26.2
MD00G1134600 Malus domestica HOM05D002956 ORTHO05D008031 6.1e-08 62.8 100 33.0
Potri.009G068400 Populus trichocarpa HOM05D002956 ORTHO05D008031 6.1e-08 62.8 158 26.6
MSTRG.12436 Avicennia marina HOM05D002956 ORTHO05D008031 7.9e-08 62.4 139 26.6
BcaNung00773 Brassica carinata HOM05D006469 ORTHO05D008034 7.9e-08 62.4 153 31.4
FvH4_3g28160 Fragaria vesca HOM05D002956 ORTHO05D008031 7.9e-08 62.4 153 27.5
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 7.9e-08 62.4 195 26.2
Cpa.g.c43825 Carica papaya HOM05D006908 ORTHO05D008662 1.4e-07 61.6 34 88.2
Cpa.g.sc41.11 Carica papaya HOM05D006908 ORTHO05D008662 1.8e-07 61.2 50 58.0
Mapoly0041s0084 Marchantia polymorpha HOM05D006745 ORTHO05D008449 1.8e-07 61.2 187 29.4
Cpa.g.sc1626.1 Carica papaya HOM05D006908 ORTHO05D008662 3.0e-07 60.5 46 63.0
Gohir.D07G125600 Gossypium hirsutum HOM05D002956 ORTHO05D008031 3.9e-07 60.1 158 24.7
Gorai.001G135400 Gossypium raimondii HOM05D002956 ORTHO05D008031 3.9e-07 60.1 100 31.0
Cpa.g.sc41.10 Carica papaya HOM05D006908 ORTHO05D008662 6.7e-07 59.3 75 45.3
Gohir.A07G121300 Gossypium hirsutum HOM05D002956 ORTHO05D008031 6.7e-07 59.3 197 22.8
MD15G1238900 Malus domestica HOM05D006745 ORTHO05D008449 6.7e-07 59.3 187 28.3
ECA233G6038 Erigeron canadensis HOM05D002956 ORTHO05D008031 8.8e-07 58.9 90 36.7
Prupe.4G260400 Prunus persica HOM05D002956 ORTHO05D008031 8.8e-07 58.9 148 26.4
Cpa.g.sc34.183 Carica papaya HOM05D002956 ORTHO05D008031 1.5e-06 58.2 142 26.1
Ca_25980_v3 Cicer arietinum L. HOM05D002956 ORTHO05D008031 1.5e-06 58.2 119 28.6
Lj2A482T63 Lonicera japonica HOM05D006745 ORTHO05D008449 1.5e-06 58.2 92 38.0
Mapoly0115s0038 Marchantia polymorpha HOM05D001602 ORTHO05D001470 1.5e-06 58.2 164 29.9
Os07g0641600 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D008031 1.5e-06 58.2 157 23.6
Psat5g191880 Pisum sativum HOM05D002956 ORTHO05D008031 1.5e-06 58.2 82 34.1
Cfa026553 Carpinus fangiana HOM05D005677 ORTHO05D006966 2.0e-06 57.8 140 35.7
Ciclev10018203m.g Citrus clementina HOM05D002956 ORTHO05D008031 2.0e-06 57.8 140 29.3
Medtr3g045720 Medicago truncatula HOM05D002956 ORTHO05D008031 2.0e-06 57.8 72 40.3
TPR.G11875 Trifolium pratense HOM05D002757 ORTHO05D008031 2.0e-06 57.8 91 35.2
Haze_23261 Corylus avellana HOM05D002956 ORTHO05D008031 2.6e-06 57.4 143 28.0
Glyma.08G154800 Glycine max HOM05D002956 ORTHO05D008031 2.6e-06 57.4 140 26.4
Hund07424 Selenicereus undatus HOM05D002956 ORTHO05D008031 2.6e-06 57.4 138 28.3
Sc22g0002270 Simmondsia chinensis HOM05D006745 ORTHO05D008449 2.6e-06 57.4 91 39.6
C01p03020 Brassica napus HOM05D006469 ORTHO05D008034 3.3e-06 57.0 155 31.0
BolC1t00288H Brassica oleracea HOM05D006469 ORTHO05D008034 3.3e-06 57.0 155 31.0
CANSAT01G0215 Cannabis sativa HOM05D006745 ORTHO05D008449 3.3e-06 57.0 209 29.2
CANSAT54G1478 Cannabis sativa HOM05D002956 ORTHO05D008031 3.3e-06 57.0 88 31.8
FAN19G0356 Fragaria x ananassa HOM05D006745 ORTHO05D008449 3.3e-06 57.0 191 27.7
GSVIVG01037341001 Vitis vinifera HOM05D002956 ORTHO05D008031 3.3e-06 57.0 138 26.8
Aa31LG2G1020 Aethionema arabicum HOM05D006745 ORTHO05D008449 4.4e-06 56.6 187 27.8
Migut.N00678 Erythranthe guttata HOM05D006745 ORTHO05D008449 4.4e-06 56.6 235 26.4
CAN.G576.2 Capsicum annuum HOM05D006745 ORTHO05D008449 5.7e-06 56.2 187 27.8
HanXRQChr12g0380421 Helianthus annuus HOM05D002956 ORTHO05D008031 5.7e-06 56.2 143 29.4
HanXRQChr16g0531741 Helianthus annuus HOM05D006745 ORTHO05D008449 5.7e-06 56.2 188 26.6
Lsat_1_v5_gn_3_71521 Lactuca sativa HOM05D006745 ORTHO05D008449 5.7e-06 56.2 188 26.6
Thecc.09G246000 Theobroma cacao HOM05D002956 ORTHO05D008031 5.7e-06 56.2 90 32.2
Ah.02g123330 Amaranthus hybridus HOM05D006745 ORTHO05D008449 7.4e-06 55.8 92 39.1
Manes.02G137300 Manihot esculenta HOM05D002956 ORTHO05D008031 7.4e-06 55.8 205 22.4
BraA01t00258Z Brassica rapa HOM05D006469 ORTHO05D008034 9.7e-06 55.5 153 28.8
CiPaw.14G111000 Carya illinoinensis HOM05D002956 ORTHO05D008031 9.7e-06 55.5 142 27.5
Eucgr.J00675 Eucalyptus grandis HOM05D002956 ORTHO05D008031 9.7e-06 55.5 140 27.9
Thhalv10002083m.g Eutrema salsugineum HOM05D002956 ORTHO05D008031 9.7e-06 55.5 141 24.8
Phvul.005G020600 Phaseolus vulgaris HOM05D002956 ORTHO05D008031 9.7e-06 55.5 140 26.4


User provided reference genes

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