Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 0.0e+00 2082.4 1164 100.0
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 0.0e+00 1576.2 1192 79.9
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 0.0e+00 1340.1 1186 68.0
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 0.0e+00 1261.1 1199 65.2
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 0.0e+00 1172.5 1204 59.7
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1132.5 1193 57.4
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1127.1 1193 57.2
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 0.0e+00 1101.7 1187 57.2
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1099.7 1214 57.7
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1092.8 1231 55.7
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1082.8 1188 57.5
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 0.0e+00 1082.4 1197 58.9
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 0.0e+00 1076.2 1220 57.0
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 3.2e-311 1072.0 1198 58.4
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 3.2e-311 1072.0 1195 56.5
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 5.6e-311 1071.2 1205 56.6
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 8.7e-309 1063.9 1199 57.7
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 8.7e-309 1063.9 1196 57.3
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 1.6e-307 1059.7 1198 56.3
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 6.9e-306 1054.3 1187 57.5
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 2.2e-304 1049.3 1207 57.4
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 1.6e-302 1043.1 1215 56.7
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 1.0e-301 1040.4 1173 56.8
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 1.1e-300 1036.9 1203 55.8
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 3.7e-299 1031.9 1196 54.9
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 5.3e-298 1028.1 1209 54.3
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 1.5e-297 1026.5 1205 55.3
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 9.3e-295 1017.3 1199 55.0
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 3.5e-294 1015.4 1204 55.1
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 2.3e-293 1012.7 1198 54.9
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 8.7e-293 1010.7 1199 54.4
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 1.9e-292 1009.6 1194 55.9
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 9.7e-292 1007.3 1184 53.0
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 1.3e-291 1006.9 1079 56.6
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 4.8e-291 1005.0 1185 55.6
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 3.1e-290 1002.3 1217 53.6
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 6.9e-290 1001.1 1207 56.6
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 1.2e-289 1000.3 1199 53.6
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 3.4e-289 998.8 1201 53.4
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 6.5e-288 994.6 1201 53.2
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 7.2e-287 991.1 1224 52.3
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 1.6e-286 989.9 1197 55.2
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 6.1e-286 988.0 1194 55.3
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 1.4e-285 986.9 1221 55.5
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 4.3e-284 981.9 1193 53.6
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 1.7e-283 979.9 1197 53.8
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 5.3e-282 974.9 1205 52.1
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 9.1e-282 974.2 1196 51.5
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 3.4e-281 972.2 1174 52.7
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 5.0e-280 968.4 1179 54.2
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 1.1e-279 967.2 1201 52.6
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.2e-278 963.8 1159 54.3
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 1.6e-278 963.4 1158 54.2
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 6.1e-278 961.4 1191 51.2
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 1.8e-277 959.9 1222 52.3
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 9.1e-274 947.6 1203 53.2
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 2.2e-272 943.0 1196 50.8
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 2.9e-272 942.6 1201 50.4
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 1.2e-270 937.2 1190 50.2
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 1.0e-269 934.1 1210 52.3
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 3.0e-269 932.6 1177 54.0
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 4.4e-268 928.7 1219 51.8
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 2.8e-267 926.0 1211 50.9
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 2.2e-264 916.4 1192 50.3
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.1e-263 914.1 1075 52.2
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 7.2e-263 911.4 1168 50.4
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 8.0e-262 907.9 1224 50.9
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 8.0e-262 907.9 1197 49.7
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 9.7e-260 901.0 1189 50.0
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 1.7e-259 900.2 1189 51.1
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 2.8e-259 899.4 1020 55.1
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 2.8e-259 899.4 1207 48.8
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 1.7e-256 890.2 1122 51.6
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 4.2e-255 885.6 1204 48.9
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 5.5e-255 885.2 1207 47.3
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 4.8e-251 872.1 1214 48.4
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 2.7e-249 866.3 1067 52.4
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.3e-248 864.0 1212 46.6
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 4.2e-247 859.0 977 52.7
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 1.6e-246 857.1 1189 49.8
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 1.0e-245 854.4 1186 49.7
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 3.0e-245 852.8 1195 49.5
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 1.2e-244 850.9 1191 48.2
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 2.0e-241 840.1 1015 52.0
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 2.0e-241 840.1 1178 49.5
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 2.5e-239 833.2 1185 48.7
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 3.1e-237 826.2 982 53.0
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 5.2e-237 825.5 1117 50.2
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 2.9e-235 819.7 1196 46.0
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 6.6e-232 808.5 1189 48.4
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 6.8e-229 798.5 1202 46.0
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 7.5e-228 795.0 1220 44.8
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 3.6e-222 776.2 1043 48.5
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 8.9e-221 771.5 867 54.3
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 4.4e-220 769.2 739 63.1
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 2.2e-219 766.9 1159 46.5
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 1.7e-216 757.3 1196 43.1
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 5.6e-215 752.3 1239 43.3
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 6.6e-208 728.8 1198 42.4
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 4.4e-204 716.1 639 62.8
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 3.8e-195 686.4 1229 40.8
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 1.4e-186 657.9 1165 42.7
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 1.0e-179 635.2 751 52.5
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.9e-176 623.2 782 50.9
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 3.7e-166 590.1 1150 40.4
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 5.3e-165 586.3 599 58.3
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 1.9e-154 551.2 876 46.7
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 2.0e-148 531.2 826 45.8
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 7.2e-146 522.7 1254 35.6
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 8.8e-144 515.8 642 51.9
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 1.5e-143 515.0 1201 35.6
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 5.7e-143 513.1 745 45.1
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 5.4e-141 506.5 1309 32.8
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 1.5e-138 498.4 717 46.9
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 9.5e-130 469.2 472 58.5
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 2.1e-113 414.8 1395 29.8
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 1.2e-100 372.5 996 32.4
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 4.4e-95 354.0 740 39.2
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.9e-82 312.0 484 42.8
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 1.4e-80 305.8 836 34.7
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 2.7e-76 291.6 418 45.7
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 1.0e-75 289.7 593 40.0
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 1.1e-56 226.5 261 52.9
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 5.3e-56 224.2 249 60.2
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 7.7e-55 220.3 230 58.7
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 3.8e-54 218.0 265 54.0
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 4.4e-50 204.5 813 32.6
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.8e-48 199.1 216 54.6
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 1.1e-40 173.3 1055 25.0
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 9.1e-40 170.2 226 56.6
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 1.8e-35 156.0 212 56.1
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 3.0e-35 155.2 176 54.0
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 2.0e-31 142.5 103 72.8
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 2.2e-30 139.0 211 54.0
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 8.5e-30 137.1 85 80.0
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 5.5e-29 134.4 183 48.6
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 8.0e-20 104.0 58 84.5
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 9.8e-18 97.1 51 90.2
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 9.8e-18 97.1 84 57.1
Sc16g0005200 Simmondsia chinensis HOM05D005068 ORTHO05D019833 3.5e-15 88.6 142 46.5
Sc16g0005110 Simmondsia chinensis HOM05D060119 ORTHO05D019833 8.9e-11 73.9 107 55.1
vmacro14087 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 4.4e-10 71.6 212 37.7
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 9.2e-08 63.9 56 57.1
Aqoxy1G00348 Aquilegia oxysepala HOM05D005068 ORTHO05D078765 2.0e-07 62.8 83 50.6
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 3.0e-06 58.9 42 64.3
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 3.0e-06 58.9 42 64.3


User provided reference genes

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