Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 5.7e-164 580.9 298 100.0
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 3.4e-132 475.3 301 83.4
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 5.4e-130 468.0 300 83.3
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 6.9e-109 397.9 300 71.0
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 2.0e-108 396.4 305 71.5
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 9.9e-108 394.0 325 69.5
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 1.3e-104 383.6 301 69.1
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 1.7e-104 383.3 300 67.7
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 2.1e-102 376.3 336 67.0
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 6.2e-102 374.8 303 69.3
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 6.2e-102 374.8 303 69.3
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 1.4e-101 373.6 340 63.8
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 1.4e-101 373.6 334 65.9
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 1.8e-101 373.2 300 66.3
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 2.4e-101 372.9 335 65.1
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 4.0e-101 372.1 300 67.0
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 1.5e-100 370.2 301 68.1
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 3.4e-100 369.0 301 67.4
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 7.6e-100 367.9 331 65.9
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 9.9e-100 367.5 302 67.9
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 9.9e-100 367.5 301 66.1
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 1.3e-99 367.1 334 64.4
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 2.9e-99 365.9 340 63.2
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.9e-99 365.9 326 64.1
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 2.9e-99 365.9 301 66.8
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.8e-99 365.5 303 69.3
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 4.9e-99 365.2 303 69.0
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 8.4e-99 364.4 303 68.3
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 8.4e-99 364.4 311 65.3
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 8.4e-99 364.4 301 66.1
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 1.4e-98 363.6 308 66.2
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 4.2e-98 362.1 332 64.5
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 4.2e-98 362.1 326 64.4
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 9.3e-98 360.9 226 85.4
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 3.5e-97 359.0 231 82.7
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 7.9e-97 357.8 231 82.3
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 7.9e-97 357.8 339 62.5
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 3.0e-96 355.9 268 70.5
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 3.9e-96 355.5 227 81.9
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 2.5e-95 352.8 273 70.3
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 5.6e-95 351.7 337 61.7
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 2.8e-94 349.4 324 64.8
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 6.2e-94 348.2 273 69.6
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 6.2e-94 348.2 339 60.5
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 8.1e-94 347.8 226 81.9
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.8e-93 346.7 324 60.8
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 3.1e-93 345.9 302 63.9
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 3.1e-93 345.9 331 62.5
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 1.5e-92 343.6 226 80.1
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 1.5e-92 343.6 336 61.0
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 2.6e-92 342.8 325 61.8
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 5.8e-92 341.7 232 77.2
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 5.8e-92 341.7 238 75.2
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 7.6e-92 341.3 231 78.8
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 1.0e-91 340.9 213 85.4
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 1.7e-91 340.1 326 61.3
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 1.7e-91 340.1 278 68.0
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.7e-91 340.1 324 60.5
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 2.9e-91 339.3 232 77.6
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 6.5e-91 338.2 325 62.2
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 6.5e-91 338.2 325 62.2
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 1.1e-90 337.4 233 77.7
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 1.9e-90 336.7 325 61.2
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 2.5e-90 336.3 239 74.5
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 3.2e-90 335.9 233 76.4
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 3.2e-90 335.9 223 78.0
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 4.2e-90 335.5 326 61.0
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 4.2e-90 335.5 255 73.7
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 7.1e-90 334.7 316 62.3
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 7.1e-90 334.7 219 80.4
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 7.1e-90 334.7 232 76.7
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 9.3e-90 334.3 233 75.5
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 9.3e-90 334.3 233 75.5
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 9.3e-90 334.3 232 76.7
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.2e-89 334.0 218 80.7
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 2.1e-89 333.2 327 60.6
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 2.7e-89 332.8 227 77.1
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 2.7e-89 332.8 219 79.9
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 3.5e-89 332.4 231 77.5
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 3.5e-89 332.4 230 76.5
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 7.9e-89 331.3 281 65.5
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 1.0e-88 330.9 233 76.4
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 1.0e-88 330.9 223 77.6
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 1.3e-88 330.5 250 72.0
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 1.8e-88 330.1 233 76.4
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 1.8e-88 330.1 230 76.1
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 2.3e-88 329.7 219 79.5
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 2.3e-88 329.7 219 79.5
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 3.0e-88 329.3 219 79.0
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 3.9e-88 328.9 219 79.0
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 6.7e-88 328.2 220 80.0
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 6.7e-88 328.2 228 75.9
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 8.7e-88 327.8 225 75.6
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 1.1e-87 327.4 219 78.5
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 1.1e-87 327.4 334 58.1
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 2.5e-87 326.2 220 78.6
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 5.7e-87 325.1 238 73.9
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 5.7e-87 325.1 437 49.9
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 7.4e-87 324.7 221 76.9
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 9.6e-87 324.3 220 78.2
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 1.3e-86 323.9 221 76.9
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 1.6e-86 323.6 221 77.4
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 2.1e-86 323.2 223 76.7
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 3.7e-86 322.4 224 76.3
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 6.3e-86 321.6 230 74.3
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 1.1e-85 320.9 213 80.8
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 1.4e-85 320.5 223 77.1
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 2.4e-85 319.7 224 76.3
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 2.4e-85 319.7 223 76.7
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 4.1e-85 318.9 220 74.1
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 5.3e-85 318.5 242 69.0
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 3.6e-81 305.8 222 73.4
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 3.9e-80 302.4 223 74.0
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 3.9e-80 302.4 230 70.9
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 1.1e-79 300.8 230 70.4
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 1.5e-79 300.4 233 70.0
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 3.3e-79 299.3 308 58.4
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 3.3e-79 299.3 217 75.1
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 1.6e-78 297.0 217 72.4
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 1.6e-78 297.0 218 72.0
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 6.9e-77 291.6 216 72.7
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 1.5e-76 290.4 177 87.6
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 1.7e-75 287.0 219 69.9
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 7.2e-74 281.6 177 81.9
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 6.1e-73 278.5 237 67.1
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.5e-71 273.9 190 78.4
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 4.1e-69 265.8 278 57.9
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 6.9e-69 265.0 169 81.7
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 2.0e-68 263.5 190 77.4
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 2.9e-67 259.6 271 59.0
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 6.1e-65 251.9 166 79.5
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 1.8e-64 250.4 308 49.7
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 3.9e-64 249.2 190 74.2
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 3.3e-63 246.1 218 62.8
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 8.2e-62 241.5 173 75.7
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 7.0e-61 238.4 206 67.5
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 9.1e-61 238.0 204 65.2
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.1e-58 231.1 263 52.9
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.1e-58 231.1 263 52.9
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 4.4e-55 219.2 218 58.7
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 1.7e-54 217.2 186 64.5
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 1.2e-49 201.1 244 50.4
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 3.6e-49 199.5 212 59.0
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 1.5e-47 194.1 180 58.9
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 3.4e-47 193.0 352 41.5
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 1.8e-45 187.2 185 56.8
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 1.4e-40 171.0 167 55.1
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 3.5e-36 156.4 340 37.6
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 2.1e-25 120.6 68 83.8
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 3.6e-25 119.8 241 34.4
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 3.3e-18 96.7 207 34.8
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 3.6e-17 93.2 204 34.8
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 2.9e-14 83.6 235 30.6
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 2.9e-14 83.6 254 31.5
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 7.8e-12 75.5 45 84.4
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 1.7e-11 74.3 42 78.6
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 1.1e-10 71.6 63 58.7
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 8.1e-09 65.5 72 50.0
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 8.1e-09 65.5 42 73.8
Nitab4.5_0000780g0100 Nicotiana tabacum HOM05D004368 ORTHO05D004990 3.1e-08 63.5 159 34.0
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 9.9e-07 58.5 204 28.9


User provided reference genes

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