Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 9.6e-92 340.1 169 100.0
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 4.2e-71 271.6 169 82.8
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 3.5e-57 225.3 169 70.4
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 2.5e-55 219.2 169 69.2
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 1.2e-54 216.9 169 68.6
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 4.7e-54 214.9 169 67.5
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 6.1e-54 214.5 169 67.5
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.8e-53 213.0 171 67.8
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 3.0e-53 212.2 171 67.8
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 3.0e-53 212.2 171 67.8
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 2.6e-52 209.1 170 67.6
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.3e-51 206.8 171 66.7
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 1.3e-51 206.8 171 67.8
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 5.3e-50 201.4 170 65.9
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 3.8e-48 195.3 171 63.7
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 8.5e-48 194.1 171 62.0
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 3.6e-46 188.7 170 62.4
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 8.0e-46 187.6 169 60.9
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 1.3e-43 180.3 167 55.7
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 1.3e-43 180.3 168 62.5
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 3.7e-43 178.7 169 59.2
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 4.8e-43 178.3 172 58.1
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 1.1e-42 177.2 171 59.6
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 1.8e-42 176.4 169 60.4
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 1.8e-42 176.4 169 58.0
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 4.1e-42 175.3 171 61.4
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 1.2e-41 173.7 168 61.9
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 1.6e-41 173.3 170 58.2
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 1.6e-41 173.3 171 58.5
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 2.7e-41 172.6 169 56.2
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 2.7e-41 172.6 169 56.2
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 3.5e-41 172.2 172 59.3
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 4.5e-41 171.8 182 57.1
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 4.5e-41 171.8 167 57.5
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 5.9e-41 171.4 169 55.6
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 7.7e-41 171.0 172 55.2
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 3.8e-40 168.7 169 56.2
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 5.0e-40 168.3 163 57.7
FAN21G3416 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.9e-39 166.4 149 61.7
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 4.2e-39 165.2 181 55.8
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 2.8e-38 162.5 169 52.7
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 3.0e-37 159.1 169 53.8
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 4.0e-37 158.7 173 53.8
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 1.2e-36 157.1 168 55.4
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 2.6e-36 156.0 172 57.6
Actinidia32155 Actinidia chinensis HOM05D006233 ORTHO05D007247 3.4e-36 155.6 171 54.4
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 3.4e-36 155.6 172 52.3
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 4.4e-36 155.2 173 52.6
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 4.4e-36 155.2 172 50.6
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 4.4e-36 155.2 172 57.6
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 5.7e-36 154.8 172 50.0
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 1.3e-35 153.7 172 51.7
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 1.3e-35 153.7 169 54.4
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 1.3e-35 153.7 171 55.0
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 2.2e-35 152.9 173 50.3
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 2.8e-35 152.5 173 56.6
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 2.8e-35 152.5 172 48.3
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 3.7e-35 152.1 174 54.6
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 3.7e-35 152.1 171 56.1
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 4.9e-35 151.8 173 52.0
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 8.3e-35 151.0 172 51.2
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 8.3e-35 151.0 172 51.7
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 8.3e-35 151.0 172 51.7
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 1.4e-34 150.2 173 51.4
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 1.8e-34 149.8 173 51.4
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 1.8e-34 149.8 173 51.4
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 2.4e-34 149.4 173 50.3
VMungo0331G0931 Vigna mungo HOM05D006233 ORTHO05D007247 4.1e-34 148.7 169 53.3
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 9.2e-34 147.5 174 52.3
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 9.2e-34 147.5 163 56.4
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 1.2e-33 147.1 177 51.4
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 4.5e-33 145.2 167 48.5
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 1.0e-32 144.1 175 53.1
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 1.0e-32 144.1 169 54.4
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 1.7e-32 143.3 171 51.5
BraA03t13001Z Brassica rapa HOM05D006233 ORTHO05D007247 2.3e-32 142.9 174 50.6
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 2.3e-32 142.9 194 46.9
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 3.9e-32 142.1 174 51.7
Duzib192G0098 Durio zibethinus HOM05D006233 ORTHO05D007247 5.0e-32 141.7 145 51.7
Glyma.07G008600 Glycine max HOM05D006233 ORTHO05D007247 5.0e-32 141.7 164 51.8
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 5.0e-32 141.7 171 52.6
Glyma.08G191600 Glycine max HOM05D006233 ORTHO05D007247 6.6e-32 141.4 165 52.7
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 8.6e-32 141.0 171 51.5
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 1.5e-31 140.2 171 51.5
CDE03G0127 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 1.9e-31 139.8 169 52.7
FAN11G2894 Fragaria x ananassa HOM05D000283 ORTHO05D007247 1.9e-31 139.8 165 52.7
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 1.9e-31 139.8 173 52.0
arahy.Tifrunner.gnm1.ann1.9P6A99 Arachis hypogaea HOM05D006233 ORTHO05D007247 3.3e-31 139.0 145 53.8
Rhsim08G0234900 Rhododendron simsii HOM05D006233 ORTHO05D007247 4.3e-31 138.7 153 50.3
EL10Ac7g16362 Beta vulgaris HOM05D006233 ORTHO05D007247 5.6e-31 138.3 183 45.4
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 5.6e-31 138.3 171 50.9
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 7.3e-31 137.9 169 50.3
Lj5A42T58 Lonicera japonica HOM05D006233 ORTHO05D007247 1.6e-30 136.7 159 52.8
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 2.1e-30 136.3 174 51.1
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 8.0e-30 134.4 160 51.2
QL05p010144 Quercus lobata HOM05D006233 ORTHO05D007247 1.0e-29 134.0 92 73.9
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 1.4e-29 133.7 184 47.3
AUR62009846 Chenopodium quinoa HOM05D006233 ORTHO05D007247 1.2e-28 130.6 181 47.5
QL05p010226 Quercus lobata HOM05D006233 ORTHO05D007247 4.4e-28 128.6 92 71.7
Hund20828 Selenicereus undatus HOM05D006233 ORTHO05D007247 2.4e-26 122.9 189 44.4
HanXRQChr04g0094941 Helianthus annuus HOM05D006233 ORTHO05D007247 2.3e-24 116.3 168 48.2
Lsat_1_v5_gn_5_135041 Lactuca sativa HOM05D006233 ORTHO05D007247 5.0e-24 115.2 146 47.9
RcHm_v2.0_Chr5g0063721 Rosa chinensis HOM05D006233 ORTHO05D007247 6.6e-24 114.8 89 64.0
Nn8g38812 Nelumbo nucifera HOM05D006233 ORTHO05D007247 1.1e-21 107.5 157 43.3
CSS0050466 Camellia sinensis var. sinensis HOM05D006233 ORTHO05D007247 3.1e-21 105.9 94 60.6
Os01g0571200 Oryza sativa ssp. japonica HOM05D006233 ORTHO05D007247 1.2e-20 104.0 168 38.7
SGA_v2.0_scaffold68G22913 Striga asiatica HOM05D006233 ORTHO05D007247 1.5e-20 103.6 150 44.7
ATR0789G010 Amborella trichopoda HOM05D006233 ORTHO05D007247 2.2e-19 99.8 111 52.3
vmacro18776 Vaccinium macrocarpon HOM05D006233 ORTHO05D007247 2.2e-19 99.8 123 48.8
A03p38520 Brassica napus HOM05D006233 ORTHO05D007247 2.9e-19 99.4 149 43.6
Zm00001eb160070 Zea mays HOM05D006233 ORTHO05D007247 3.7e-19 99.0 177 39.0
BraA05t22362Z Brassica rapa HOM05D006233 ORTHO05D007247 1.1e-18 97.4 175 41.1
Sed0004594 Sechium edule HOM05D006233 ORTHO05D007247 3.0e-16 89.4 93 54.8
unitig_8.g4463 Utricularia gibba HOM05D006233 ORTHO05D007247 8.6e-16 87.8 152 38.2
A05p35530 Brassica napus HOM05D006233 ORTHO05D007247 1.6e-14 83.6 94 46.8
CDE06G1672 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 4.7e-14 82.0 138 40.6
FAN25G2302 Fragaria x ananassa HOM05D000283 ORTHO05D000358 2.0e-12 76.6 59 66.1
BcaC05g29150 Brassica carinata HOM05D006233 ORTHO05D007247 1.7e-11 73.6 172 37.8
HPP92_007656 Vanilla planifolia HOM05D006233 ORTHO05D007247 2.9e-11 72.8 149 36.9
SalBow7G1471 Salvia bowleyana HOM05D006233 ORTHO05D007247 6.4e-11 71.6 103 43.7
Pp3c4_29560 Physcomitrium patens HOM05D006233 ORTHO05D007247 1.1e-10 70.9 74 51.4
Mapoly0016s0011 Marchantia polymorpha HOM05D006233 ORTHO05D007247 1.2e-09 67.4 84 50.0
AagrBONN_evm.TU.Sc2ySwM_368.223 Anthoceros agrestis HOM05D003143 ORTHO05D003628 2.1e-09 66.6 67 50.7
Sc15g0000290 Simmondsia chinensis HOM05D006233 ORTHO05D007247 2.1e-09 66.6 124 35.5
Nn1g01194 Nelumbo nucifera HOM05D006233 ORTHO05D007247 2.7e-09 66.2 50 66.0
Oeu011882.1 Olea europaea HOM05D006233 ORTHO05D007247 4.6e-09 65.5 94 48.9
Zm00001eb357240 Zea mays HOM05D006233 ORTHO05D007247 4.6e-09 65.5 154 32.5
Ca_29232_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 1.1e-07 60.8 42 69.0
CBR_g8600 Chara braunii HOM05D006233 ORTHO05D007247 3.3e-07 59.3 51 56.9
MCO16G417 Micromonas commoda HOM05D003208 ORTHO05D004103 7.3e-07 58.2 57 50.9
CSS0050070 Camellia sinensis var. sinensis HOM05D041584 ORTHO05D007247 8.1e-06 54.7 33 69.7


User provided reference genes

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