Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 0.0e+00 1312.0 660 100.0
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 0.0e+00 1149.8 659 86.9
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 0.0e+00 1141.7 659 85.9
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 0.0e+00 1135.2 659 85.4
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 8.4e-309 1063.1 660 78.9
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 2.7e-307 1058.1 652 79.0
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 6.0e-307 1057.0 659 78.8
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 2.3e-306 1055.0 660 78.5
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 2.5e-305 1051.6 650 79.1
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 5.6e-305 1050.4 652 79.4
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 8.1e-304 1046.6 655 77.3
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 1.4e-303 1045.8 660 78.2
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 3.1e-303 1044.6 653 78.6
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 2.6e-302 1041.6 660 79.1
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 3.4e-302 1041.2 661 77.2
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 1.4e-300 1035.8 653 78.1
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 2.5e-300 1035.0 653 78.3
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 3.2e-300 1034.6 661 77.0
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 6.0e-299 1030.4 654 77.2
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 6.0e-299 1030.4 654 77.2
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 3.3e-297 1024.6 654 77.8
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 3.4e-294 1014.6 657 76.9
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 3.2e-292 1008.1 619 79.5
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 5.5e-292 1007.3 664 75.3
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 2.7e-291 1005.0 660 75.6
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 3.6e-291 1004.6 658 74.5
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 1.8e-290 1002.3 655 75.9
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 1.9e-289 998.8 648 76.9
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 1.6e-288 995.7 650 75.4
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 2.2e-288 995.3 649 75.2
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 6.3e-288 993.8 664 75.0
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 6.3e-288 993.8 656 74.4
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 3.1e-287 991.5 650 76.0
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 5.3e-287 990.7 661 74.6
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 5.3e-287 990.7 654 75.5
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 5.3e-287 990.7 654 75.5
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 5.3e-287 990.7 653 74.4
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 1.2e-286 989.6 657 75.2
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 1.3e-285 986.1 656 75.2
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 1.9e-284 982.2 655 74.2
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 2.7e-283 978.4 654 73.2
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 1.1e-281 973.0 656 74.4
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 2.6e-281 971.8 658 73.1
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 3.2e-276 954.9 658 71.6
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 7.2e-276 953.7 667 72.1
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 1.2e-275 953.0 664 72.3
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 2.7e-275 951.8 653 73.0
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 6.1e-275 950.7 652 73.0
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 6.1e-275 950.7 647 73.4
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 1.4e-274 949.5 667 71.7
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 1.2e-270 936.4 651 71.0
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 1.3e-269 932.9 655 71.8
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 1.1e-268 929.9 652 70.4
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 2.7e-267 925.2 582 77.7
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 6.1e-267 924.1 644 71.1
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 8.0e-267 923.7 657 70.0
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 4.4e-265 917.9 650 70.6
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 2.8e-264 915.2 665 70.7
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 1.1e-263 913.3 642 69.8
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 1.1e-263 913.3 642 69.8
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 1.8e-263 912.5 664 70.3
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 3.1e-263 911.8 652 68.6
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 3.1e-263 911.8 651 69.6
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 1.0e-261 906.7 610 73.0
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 1.3e-261 906.4 648 69.4
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 2.2e-261 905.6 648 69.1
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 2.2e-261 905.6 663 67.7
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 1.5e-260 902.9 648 68.8
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 3.6e-259 898.3 648 68.2
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 6.1e-259 897.5 666 68.0
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 2.3e-258 895.6 665 68.7
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 2.3e-258 895.6 663 67.4
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 4.0e-258 894.8 642 68.8
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 2.0e-257 892.5 648 68.7
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 2.0e-257 892.5 648 67.6
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 4.5e-254 881.3 647 68.9
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 3.0e-250 868.6 649 66.4
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 5.2e-250 867.8 650 66.6
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 2.2e-248 862.4 648 67.0
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 5.9e-246 854.4 641 66.1
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 5.0e-245 851.3 639 66.2
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 1.5e-241 839.7 641 65.2
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 7.5e-241 837.4 683 63.7
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 2.9e-240 835.5 525 77.1
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 3.2e-239 832.0 641 64.6
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 9.2e-239 830.5 653 65.8
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 1.3e-237 826.6 643 64.9
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 5.6e-236 821.2 660 65.3
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 9.5e-228 793.9 558 69.5
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 8.9e-218 760.8 651 62.4
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 1.7e-216 756.5 655 61.1
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 1.8e-210 736.5 554 67.5
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 4.2e-207 725.3 626 61.3
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 2.5e-204 716.1 683 57.2
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 1.3e-203 713.8 656 59.5
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 2.1e-195 686.4 627 58.1
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 4.5e-185 652.1 575 61.0
Zm00001eb155350 Zea mays HOM05D005721 ORTHO05D006758 1.1e-178 630.9 500 64.4
Oeu026535.1 Olea europaea HOM05D005721 ORTHO05D006758 1.3e-176 624.0 442 69.5
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 3.0e-173 612.8 654 53.7
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 1.2e-166 590.9 655 48.9
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 6.3e-163 578.6 656 47.3
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 7.7e-161 571.6 665 46.2
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 2.2e-152 543.5 657 44.9
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 9.5e-127 458.4 630 39.5
FAN14G1222 Fragaria x ananassa HOM05D005721 ORTHO05D006758 5.4e-98 362.8 227 74.9
arahy.Tifrunner.gnm1.ann1.NL3M0M Arachis hypogaea HOM05D005721 ORTHO05D006758 4.4e-92 343.2 339 55.8
FvH4_6g32370 Fragaria vesca HOM05D005721 ORTHO05D006758 5.0e-59 233.4 147 75.5
Oeu023783.1 Olea europaea HOM05D005721 ORTHO05D006758 3.7e-54 217.2 288 45.8
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 3.4e-52 210.7 350 37.7
QL05p015216 Quercus lobata HOM05D005721 ORTHO05D006758 1.7e-51 208.4 160 66.9
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 1.5e-47 195.3 121 74.4
Gorai.010G178600 Gossypium raimondii HOM05D005721 ORTHO05D006758 3.3e-47 194.1 156 62.2
Glyma.16G086100 Glycine max HOM05D005721 ORTHO05D006758 8.5e-43 179.5 107 78.5
Glyma.16G136400 Glycine max HOM05D005721 ORTHO05D006758 1.4e-40 172.2 107 75.7
VMungo0251G0043 Vigna mungo HOM05D005721 ORTHO05D006758 1.4e-40 172.2 131 65.6
Zm00001eb192810 Zea mays HOM05D005721 ORTHO05D006758 2.3e-40 171.4 110 76.4
arahy.Tifrunner.gnm1.ann1.P3QXG2 Arachis hypogaea HOM05D005721 ORTHO05D006758 6.7e-40 169.9 177 54.8
Gohir.A06G146950 Gossypium hirsutum HOM05D005721 ORTHO05D006758 4.4e-39 167.2 155 56.8
Gohir.D06G152751 Gossypium hirsutum HOM05D005721 ORTHO05D006758 3.7e-38 164.1 155 54.8
SEGI_20658 Sequoiadendron giganteum HOM05D005721 ORTHO05D006758 3.5e-36 157.5 347 30.5
Zm00001eb419420 Zea mays HOM05D005721 ORTHO05D006758 3.8e-35 154.1 94 77.7
Glyma.12G149950 Glycine max HOM05D005721 ORTHO05D006758 1.3e-30 139.0 85 75.3
arahy.Tifrunner.gnm1.ann1.F8M988 Arachis hypogaea HOM05D005721 ORTHO05D006758 1.8e-29 135.2 90 70.0
HanXRQChr05g0162621 Helianthus annuus HOM05D005721 ORTHO05D006758 1.3e-27 129.0 83 73.5
Glyma.09G112900 Glycine max HOM05D005721 ORTHO05D006758 2.2e-27 128.3 101 63.4
HanXRQChr04g0123091 Helianthus annuus HOM05D005721 ORTHO05D006758 1.2e-25 122.5 80 73.8
arahy.Tifrunner.gnm1.ann1.SY3941 Arachis hypogaea HOM05D005721 ORTHO05D006758 6.1e-25 120.2 82 69.5
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 1.8e-24 118.6 88 68.2
Cfa026500 Carpinus fangiana HOM05D005721 ORTHO05D006758 3.7e-22 110.9 504 25.8
HanXRQChr05g0131511 Helianthus annuus HOM05D005721 ORTHO05D006758 8.0e-17 93.2 101 50.5
MCO06G118 Micromonas commoda HOM05D005721 ORTHO05D006758 8.9e-16 89.7 219 30.6
arahy.Tifrunner.gnm1.ann1.EXE9LQ Arachis hypogaea HOM05D005721 ORTHO05D006758 5.7e-15 87.0 56 67.9
HanXRQChr09g0276291 Helianthus annuus HOM05D005721 ORTHO05D006758 4.9e-14 84.0 48 81.2
Glyma.19G071451 Glycine max HOM05D005721 ORTHO05D006758 8.3e-14 83.2 54 70.4
SMO117G0241 Selaginella moellendorffii HOM05D067901 ORTHO05D006758 4.9e-06 57.4 169 28.4


User provided reference genes

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