Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_15831 Corylus avellana HOM05D008072 ORTHO05D010204 8.3e-53 210.7 160 100.0
Cfa003662 Carpinus fangiana HOM05D008072 ORTHO05D010204 2.0e-22 109.8 139 51.8
Potri.001G188400 Populus trichocarpa HOM05D008072 ORTHO05D010204 5.8e-22 108.2 159 42.1
QL05p020523 Quercus lobata HOM05D008072 ORTHO05D010204 8.4e-21 104.4 157 44.6
Dinv37992 Davidia involucrata HOM05D008072 ORTHO05D010204 2.1e-19 99.8 158 41.1
MD17G1186400 Malus domestica HOM05D008072 ORTHO05D010204 4.6e-19 98.6 163 41.7
Prupe.3G061100 Prunus persica HOM05D008072 ORTHO05D010204 3.9e-18 95.5 155 40.0
Sabra01G0152600 Salix brachista HOM05D008072 ORTHO05D010204 1.1e-17 94.0 162 39.5
TAR626G1017 Trochodendron aralioides HOM05D008072 ORTHO05D010204 1.9e-17 93.2 161 38.5
Aqoxy7G01464 Aquilegia oxysepala HOM05D008072 ORTHO05D010204 5.6e-17 91.7 159 37.1
Duzib192G0771 Durio zibethinus HOM05D008072 ORTHO05D010204 3.7e-16 89.0 166 37.3
CSS0040470 Camellia sinensis var. sinensis HOM05D008072 ORTHO05D010204 1.1e-15 87.4 161 37.3
Thecc.06G097600 Theobroma cacao HOM05D008072 ORTHO05D010204 1.8e-15 86.7 162 39.5
Peaxi162Scf00038g00843 Petunia axillaris HOM05D008072 ORTHO05D010204 9.0e-15 84.3 161 36.6
Cc04_g02690 Coffea canephora HOM05D008072 ORTHO05D010204 2.0e-14 83.2 159 35.2
Oeu060494.1 Olea europaea HOM05D008072 ORTHO05D010204 4.5e-14 82.0 158 34.8
RcHm_v2.0_Chr2g0140071 Rosa chinensis HOM05D008072 ORTHO05D010204 5.8e-14 81.6 159 34.6
Actinidia09003 Actinidia chinensis HOM05D008072 ORTHO05D010204 7.6e-14 81.3 161 36.6
Hma1.2p1_3269F.1_g334750 Hydrangea macrophylla HOM05D008072 ORTHO05D010204 7.6e-14 81.3 160 36.2
Atru.chr1.3499 Acer truncatum HOM05D008072 ORTHO05D010204 1.0e-13 80.9 171 36.3
Ciclev10026797m.g Citrus clementina HOM05D008072 ORTHO05D010204 1.3e-13 80.5 162 36.4
Rhsim12G0202400 Rhododendron simsii HOM05D008072 ORTHO05D010204 1.3e-13 80.5 158 35.4
GSVIVG01017012001 Vitis vinifera HOM05D008072 ORTHO05D010204 2.2e-13 79.7 160 35.6
FAN05G4246 Fragaria x ananassa HOM05D008072 ORTHO05D010204 8.4e-13 77.8 160 35.0
FvH4_6g32180 Fragaria vesca HOM05D008072 ORTHO05D010204 1.1e-12 77.4 160 35.0
FAN02G2294 Fragaria x ananassa HOM05D008072 ORTHO05D010204 1.1e-12 77.4 160 35.0
FAN09G3706 Fragaria x ananassa HOM05D008072 ORTHO05D010204 1.4e-12 77.0 160 35.0
Gorai.003G063000 Gossypium raimondii HOM05D008072 ORTHO05D010204 1.9e-12 76.6 145 36.6
FAN14G4057 Fragaria x ananassa HOM05D008072 ORTHO05D010204 4.2e-12 75.5 161 34.8
Gohir.D03G059100 Gossypium hirsutum HOM05D008072 ORTHO05D010204 4.2e-12 75.5 44 77.3
PGR102G0255 Punica granatum HOM05D008072 ORTHO05D010204 4.2e-12 75.5 168 36.3
Nn2g11609 Nelumbo nucifera HOM05D008072 ORTHO05D010204 7.1e-12 74.7 159 33.3
ClCG09G000070 Citrullus lanatus HOM05D008072 ORTHO05D010204 1.6e-11 73.6 157 34.4
MELO3C024449.2 Cucumis melo HOM05D008072 ORTHO05D010204 2.1e-11 73.2 44 72.7
Gohir.A02G118500 Gossypium hirsutum HOM05D008072 ORTHO05D010204 3.5e-11 72.4 145 35.2
Lj3g0001751 Lotus japonicus HOM05D008072 ORTHO05D010204 4.6e-11 72.0 162 34.0
PGSC0003DMG400002533 Solanum tuberosum HOM05D008072 ORTHO05D010204 7.9e-11 71.2 159 34.0
Manes.04G132700 Manihot esculenta HOM05D008072 ORTHO05D010204 1.3e-10 70.5 160 34.4
TWI18G1284 Tripterygium wilfordii HOM05D008072 ORTHO05D010204 1.3e-10 70.5 161 34.2
Sopen03g039710 Solanum pennellii HOM05D008072 ORTHO05D010204 1.8e-10 70.1 159 33.3
Sed0011388 Sechium edule HOM05D008072 ORTHO05D010204 2.3e-10 69.7 45 68.9
Cpa.g.c31416 Carica papaya HOM05D008072 ORTHO05D010204 3.9e-10 68.9 44 70.5
CsaV3_7G035400 Cucumis sativus L. HOM05D008072 ORTHO05D010204 3.9e-10 68.9 44 68.2
Nitab4.5_0001755g0100 Nicotiana tabacum HOM05D008072 ORTHO05D010204 5.1e-10 68.6 44 70.5
SalBow7G3462 Salvia bowleyana HOM05D008072 ORTHO05D010204 8.7e-10 67.8 45 66.7
CiPaw.02G146800 Carya illinoinensis HOM05D008072 ORTHO05D010204 1.5e-09 67.0 46 69.6
MD09G1205700 Malus domestica HOM05D008072 ORTHO05D010204 1.5e-09 67.0 44 68.2
Glyma.07G016900 Glycine max HOM05D008072 ORTHO05D010204 3.3e-09 65.9 161 34.2
VMungo0331G2041 Vigna mungo HOM05D008072 ORTHO05D010204 5.7e-09 65.1 161 31.7
Nn8g39117 Nelumbo nucifera HOM05D008072 ORTHO05D010204 7.4e-09 64.7 153 30.1
Sc10g0007210 Simmondsia chinensis HOM05D008072 ORTHO05D010204 7.4e-09 64.7 158 31.0
Glyma.08G202200 Glycine max HOM05D008072 ORTHO05D010204 9.7e-09 64.3 161 31.7
Phvul.010G146400 Phaseolus vulgaris HOM05D008072 ORTHO05D010204 9.7e-09 64.3 161 31.1
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 1.6e-08 63.5 155 31.0
MSTRG.9481 Avicennia marina HOM05D008072 ORTHO05D010204 8.2e-08 61.2 42 64.3
EL10Ac9g22100 Beta vulgaris HOM05D008072 ORTHO05D010204 1.1e-07 60.8 159 28.3
TPR.G35014 Trifolium pratense HOM05D008072 ORTHO05D010204 2.4e-07 59.7 159 27.7
arahy.Tifrunner.gnm1.ann1.UX9EW1 Arachis hypogaea HOM05D008072 ORTHO05D010204 5.3e-07 58.5 40 67.5
arahy.Tifrunner.gnm1.ann1.XD1M86 Arachis hypogaea HOM05D008072 ORTHO05D010204 5.3e-07 58.5 40 67.5
Lalb_Chr04g0262911 Lupinus albus HOM05D008072 ORTHO05D010204 5.3e-07 58.5 160 28.8
CANSAT56G4142 Cannabis sativa HOM05D008072 ORTHO05D010204 9.0e-07 57.8 163 28.8
HanXRQChr16g0501221 Helianthus annuus HOM05D008072 ORTHO05D010204 2.6e-06 56.2 158 29.1
Medtr8g013930 Medicago truncatula HOM05D008072 ORTHO05D010204 2.6e-06 56.2 44 56.8
Hund06655 Selenicereus undatus HOM05D008072 ORTHO05D010204 5.9e-06 55.1 46 56.5
Hund31378 Selenicereus undatus HOM05D008072 ORTHO05D010204 5.9e-06 55.1 46 56.5
SGA_v2.0_scaffold4G02017 Striga asiatica HOM05D008072 ORTHO05D010204 1.0e-05 54.3 170 30.0


User provided reference genes

Program Settings