Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_15748 Corylus avellana HOM05D000071 ORTHO05D022462 3.0e-56 222.2 173 100.0
Haze_05271 Corylus avellana HOM05D000071 ORTHO05D022462 1.0e-16 90.9 76 60.5
Haze_05209 Corylus avellana HOM05D000071 ORTHO05D022462 5.7e-15 85.1 49 83.7
Haze_05224 Corylus avellana HOM05D000071 ORTHO05D000029 2.2e-14 83.2 97 52.6
PGSC0003DMG400017337 Solanum tuberosum HOM05D000071 ORTHO05D000029 7.0e-13 78.2 92 44.6
CAN.G321.44 Capsicum annuum HOM05D000071 ORTHO05D000029 9.1e-13 77.8 89 48.3
CAN.G905.32 Capsicum annuum HOM05D000071 ORTHO05D000029 1.6e-12 77.0 85 49.4
Hma1.2p1_1278F.1_g272380 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 4.5e-12 75.5 72 54.2
Thecc.02G277200 Theobroma cacao HOM05D000071 ORTHO05D000029 5.9e-12 75.1 84 50.0
COL.COLO4_17178 Corchorus olitorius HOM05D000071 ORTHO05D000029 7.7e-12 74.7 70 54.3
TPR.G4580 Trifolium pratense HOM05D000071 ORTHO05D000029 1.7e-11 73.6 95 43.2
QL04p093548 Quercus lobata HOM05D000071 ORTHO05D000029 2.2e-11 73.2 71 52.1
TAR374G1085 Trochodendron aralioides HOM05D000071 ORTHO05D000029 2.2e-11 73.2 86 44.2
Eucgr.J02327 Eucalyptus grandis HOM05D000071 ORTHO05D000029 3.8e-11 72.4 72 47.2
Prupe.2G099600 Prunus persica HOM05D000071 ORTHO05D000029 3.8e-11 72.4 93 43.0
Prupe.2G169100 Prunus persica HOM05D000071 ORTHO05D000029 3.8e-11 72.4 93 43.0
QL03p053955 Quercus lobata HOM05D000071 ORTHO05D000029 3.8e-11 72.4 83 48.2
Eucgr.L01192 Eucalyptus grandis HOM05D000071 ORTHO05D000029 8.5e-11 71.2 77 44.2
Prupe.2G168400 Prunus persica HOM05D000071 ORTHO05D000029 8.5e-11 71.2 78 43.6
Cfa015747 Carpinus fangiana HOM05D000071 ORTHO05D003330 1.1e-10 70.9 52 67.3
Eucgr.J02326 Eucalyptus grandis HOM05D000071 ORTHO05D000029 1.5e-10 70.5 72 47.2
Prupe.2G168700 Prunus persica HOM05D000071 ORTHO05D000029 1.5e-10 70.5 93 40.9
Eucgr.J02330 Eucalyptus grandis HOM05D000071 ORTHO05D000029 1.9e-10 70.1 70 47.1
Haze_05222 Corylus avellana HOM05D000071 ORTHO05D000029 2.5e-10 69.7 44 77.3
MD15G1414900 Malus domestica HOM05D000071 ORTHO05D022462 2.5e-10 69.7 94 41.5
Medtr2g017450 Medicago truncatula HOM05D000071 ORTHO05D000029 2.5e-10 69.7 95 44.2
QL03p054080 Quercus lobata HOM05D000071 ORTHO05D000029 3.2e-10 69.3 91 45.1
QL11p011800 Quercus lobata HOM05D000071 ORTHO05D000029 3.2e-10 69.3 56 64.3
TAR374G1261 Trochodendron aralioides HOM05D000071 ORTHO05D000029 3.2e-10 69.3 81 45.7
CSS0004324 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 4.2e-10 68.9 88 45.5
Lj7A274G16 Lonicera japonica HOM05D000071 ORTHO05D000029 4.2e-10 68.9 89 42.7
Lj7C271T0 Lonicera japonica HOM05D000071 ORTHO05D000029 4.2e-10 68.9 89 42.7
vmacro06853 Vaccinium macrocarpon HOM05D000071 ORTHO05D000029 4.2e-10 68.9 93 44.1
CSS0025098 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 5.5e-10 68.6 88 44.3
CSS0046869 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 5.5e-10 68.6 88 44.3
Dinv25664 Davidia involucrata HOM05D000071 ORTHO05D000029 5.5e-10 68.6 68 52.9
QL04p093573 Quercus lobata HOM05D000071 ORTHO05D000029 5.5e-10 68.6 66 51.5
RcHm_v2.0_Chr7g0219061 Rosa chinensis HOM05D000071 ORTHO05D000029 5.5e-10 68.6 98 39.8
Prupe.2G169200 Prunus persica HOM05D000071 ORTHO05D000029 9.4e-10 67.8 93 39.8
QL05p008200 Quercus lobata HOM05D000071 ORTHO05D000029 9.4e-10 67.8 84 44.0
GSVIVG01001804001 Vitis vinifera HOM05D000071 ORTHO05D000029 9.4e-10 67.8 101 42.6
Oeu049764.4 Olea europaea HOM05D000071 ORTHO05D000029 1.2e-09 67.4 72 47.2
CiPaw.09G120300 Carya illinoinensis HOM05D000071 ORTHO05D000029 1.6e-09 67.0 110 40.9
Hma1.2p1_1011F.1_g247580 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 1.6e-09 67.0 78 43.6
Manes.09G007400 Manihot esculenta HOM05D000071 ORTHO05D000029 1.6e-09 67.0 94 40.4
Medtr2g017495 Medicago truncatula HOM05D000071 ORTHO05D000029 2.1e-09 66.6 95 41.1
Prupe.2G169500 Prunus persica HOM05D000071 ORTHO05D000029 2.1e-09 66.6 78 41.0
GSVIVG01001802001 Vitis vinifera HOM05D000071 ORTHO05D000029 2.1e-09 66.6 101 41.6
COL.COLO4_20365 Corchorus olitorius HOM05D000071 ORTHO05D000029 2.7e-09 66.2 118 34.7
Oeu013643.1 Olea europaea HOM05D000071 ORTHO05D000029 3.6e-09 65.9 67 49.3
Lsat_1_v5_gn_8_13781 Lactuca sativa HOM05D000071 ORTHO05D000029 4.7e-09 65.5 83 41.0
MD14G1186300 Malus domestica HOM05D000071 ORTHO05D000029 4.7e-09 65.5 93 41.9
Thecc.02G277400 Theobroma cacao HOM05D000071 ORTHO05D000029 4.7e-09 65.5 82 48.8
FAN25G0406 Fragaria x ananassa HOM05D000071 ORTHO05D000029 6.1e-09 65.1 74 44.6
Medtr2g017785 Medicago truncatula HOM05D000071 ORTHO05D000029 6.1e-09 65.1 95 44.2
QL04p093590 Quercus lobata HOM05D000071 ORTHO05D000029 6.1e-09 65.1 88 45.5
TPR.G4462 Trifolium pratense HOM05D000071 ORTHO05D000029 6.1e-09 65.1 95 40.0
TAR374G0292 Trochodendron aralioides HOM05D000071 ORTHO05D000029 6.1e-09 65.1 78 48.7
Atru.chr6.2540 Acer truncatum HOM05D000071 ORTHO05D000029 8.0e-09 64.7 72 47.2
Medtr2g017795 Medicago truncatula HOM05D000071 ORTHO05D022462 8.0e-09 64.7 95 43.2
Prupe.2G168800 Prunus persica HOM05D000071 ORTHO05D000029 8.0e-09 64.7 82 39.0
RcHm_v2.0_Chr3g0470501 Rosa chinensis HOM05D000071 ORTHO05D000029 8.0e-09 64.7 89 41.6
CSS0033806 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 1.0e-08 64.3 67 46.3
FAN16G2150 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.0e-08 64.3 116 35.3
COL.COLO4_20363 Corchorus olitorius HOM05D000071 ORTHO05D000029 1.4e-08 63.9 60 58.3
FAN25G3514 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.4e-08 63.9 74 43.2
PGR102G2300 Punica granatum HOM05D000071 ORTHO05D000029 1.4e-08 63.9 75 46.7
COL.COLO4_20378 Corchorus olitorius HOM05D000071 ORTHO05D000029 1.8e-08 63.5 82 41.5
Manes.16G058200 Manihot esculenta HOM05D000071 ORTHO05D000029 1.8e-08 63.5 76 44.7
Prupe.1G067000 Prunus persica HOM05D000071 ORTHO05D000029 1.8e-08 63.5 114 32.5
Rhsim09G0139400 Rhododendron simsii HOM05D000071 ORTHO05D000029 1.8e-08 63.5 91 40.7
CiPaw.05G209900 Carya illinoinensis HOM05D000071 ORTHO05D000029 2.3e-08 63.2 93 38.7
Haze_05269 Corylus avellana HOM05D000071 ORTHO05D000029 2.3e-08 63.2 96 40.6
Phvul.004G100014 Phaseolus vulgaris HOM05D000071 ORTHO05D000029 2.3e-08 63.2 67 44.8
PGR083G2557 Punica granatum HOM05D000071 ORTHO05D000029 2.3e-08 63.2 69 43.5
CSS0017287 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 3.0e-08 62.8 94 37.2
MD10G1221400 Malus domestica HOM05D000071 ORTHO05D000029 3.0e-08 62.8 68 50.0
Oeu004716.4 Olea europaea HOM05D000071 ORTHO05D000029 3.0e-08 62.8 67 47.8
QL93p0310_0045 Quercus lobata HOM05D000071 ORTHO05D000029 3.0e-08 62.8 82 42.7
VMungo0720G1611 Vigna mungo HOM05D000071 ORTHO05D000029 3.0e-08 62.8 89 46.1
COL.COLO4_17185 Corchorus olitorius HOM05D000071 ORTHO05D000029 4.0e-08 62.4 76 46.1
Glyma.16G176900 Glycine max HOM05D000071 ORTHO05D000029 4.0e-08 62.4 94 40.4
QL93p0310_0029 Quercus lobata HOM05D000071 ORTHO05D000029 4.0e-08 62.4 70 48.6
CiPaw.05G210000 Carya illinoinensis HOM05D000071 ORTHO05D000029 6.8e-08 61.6 92 38.0
Haze_05211 Corylus avellana HOM05D000071 ORTHO05D000029 6.8e-08 61.6 93 41.9
Duzib114G0827 Durio zibethinus HOM05D000071 ORTHO05D000029 6.8e-08 61.6 86 46.5
FAN16G0359 Fragaria x ananassa HOM05D000071 ORTHO05D000029 6.8e-08 61.6 92 40.2
FAN16G3241 Fragaria x ananassa HOM05D000071 ORTHO05D000029 6.8e-08 61.6 92 40.2
TPR.G4484 Trifolium pratense HOM05D000071 ORTHO05D000029 6.8e-08 61.6 96 39.6
Rhsim09G0138900 Rhododendron simsii HOM05D000071 ORTHO05D000029 8.8e-08 61.2 91 38.5
TAR266G0003 Trochodendron aralioides HOM05D000071 ORTHO05D000029 8.8e-08 61.2 108 38.9
Cc04_g08800 Coffea canephora HOM05D000071 ORTHO05D000029 1.2e-07 60.8 85 43.5
Hma1.2p1_1011F.1_g247590 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 1.2e-07 60.8 70 47.1
Prupe.2G167700 Prunus persica HOM05D000071 ORTHO05D000029 1.2e-07 60.8 78 37.2
DCAR_003743 Daucus carota HOM05D000071 ORTHO05D000029 1.5e-07 60.5 78 42.3
Thecc.02G277800 Theobroma cacao HOM05D000071 ORTHO05D000029 1.5e-07 60.5 83 42.2
Thecc.04G034100 Theobroma cacao HOM05D000071 ORTHO05D000029 1.5e-07 60.5 56 58.9
CSS0021909 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 2.0e-07 60.1 96 34.4
Haze_05212 Corylus avellana HOM05D000071 ORTHO05D000029 2.0e-07 60.1 46 67.4
TWI56G0711 Tripterygium wilfordii HOM05D000071 ORTHO05D000029 2.0e-07 60.1 77 41.6
Atru.chr6.2544 Acer truncatum HOM05D000071 ORTHO05D000029 2.6e-07 59.7 72 45.8
RcHm_v2.0_Chr1g0315621 Rosa chinensis HOM05D000071 ORTHO05D000029 2.6e-07 59.7 76 40.8
Atru.chr6.2539 Acer truncatum HOM05D000071 ORTHO05D000029 3.4e-07 59.3 72 45.8
Ciclev10017744m.g Citrus clementina HOM05D000071 ORTHO05D000029 3.4e-07 59.3 75 46.7
MD10G1222900 Malus domestica HOM05D000071 ORTHO05D000029 3.4e-07 59.3 60 50.0
FvH4_7g14060 Fragaria vesca HOM05D000071 ORTHO05D000029 4.4e-07 58.9 79 39.2
Thecc.02G306800 Theobroma cacao HOM05D000071 ORTHO05D000029 4.4e-07 58.9 89 38.2
Ciclev10029913m.g Citrus clementina HOM05D000071 ORTHO05D000029 5.7e-07 58.5 69 46.4
FvH4_4g32560 Fragaria vesca HOM05D000071 ORTHO05D000029 7.5e-07 58.2 62 48.4
Prupe.2G171500 Prunus persica HOM05D000071 ORTHO05D000029 7.5e-07 58.2 96 40.6
FAN11G1904 Fragaria x ananassa HOM05D000071 ORTHO05D000029 9.8e-07 57.8 74 41.9
FAN25G3387 Fragaria x ananassa HOM05D000071 ORTHO05D000029 9.8e-07 57.8 84 40.5
Lsat_1_v5_gn_6_42181 Lactuca sativa HOM05D000071 ORTHO05D000029 9.8e-07 57.8 91 37.4
Ciclev10018220m.g Citrus clementina HOM05D000071 ORTHO05D000029 1.3e-06 57.4 77 44.2
FAN01G0894 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.3e-06 57.4 69 42.0
Gohir.D11G307825 Gossypium hirsutum HOM05D000071 ORTHO05D000029 1.3e-06 57.4 81 38.3
Gorai.007G338400 Gossypium raimondii HOM05D000071 ORTHO05D000029 1.3e-06 57.4 81 38.3
Peaxi162Scf00037g00067 Petunia axillaris HOM05D000071 ORTHO05D000029 1.3e-06 57.4 82 40.2
RcHm_v2.0_Chr1g0315391 Rosa chinensis HOM05D000071 ORTHO05D000029 1.3e-06 57.4 91 38.5
RcHm_v2.0_Chr2g0143091 Rosa chinensis HOM05D000071 ORTHO05D000029 1.3e-06 57.4 50 60.0
Medtr2g017480 Medicago truncatula HOM05D000071 ORTHO05D000029 1.7e-06 57.0 81 42.0
QL08p005662 Quercus lobata HOM05D000071 ORTHO05D000029 1.7e-06 57.0 69 43.5
RcHm_v2.0_Chr5g0029441 Rosa chinensis HOM05D000071 ORTHO05D000029 1.7e-06 57.0 90 37.8
TPR.G26188 Trifolium pratense HOM05D002380 ORTHO05D008286 1.7e-06 57.0 90 40.0
MD07G1141200 Malus domestica HOM05D000071 ORTHO05D000029 2.2e-06 56.6 74 44.6
QL05p024087 Quercus lobata HOM05D000071 ORTHO05D000029 2.2e-06 56.6 67 44.8
Rhsim03G0184700 Rhododendron simsii HOM05D000071 ORTHO05D000029 2.2e-06 56.6 76 38.2
RcHm_v2.0_Chr1g0315321 Rosa chinensis HOM05D000071 ORTHO05D000029 2.2e-06 56.6 91 38.5
PGSC0003DMG400018994 Solanum tuberosum HOM05D000071 ORTHO05D000029 2.2e-06 56.6 72 40.3
COL.COLO4_20701 Corchorus olitorius HOM05D000071 ORTHO05D000029 2.8e-06 56.2 91 42.9
Solyc01g099250.3 Solanum lycopersicum HOM05D000071 ORTHO05D000029 2.8e-06 56.2 84 39.3
TAR374G1206 Trochodendron aralioides HOM05D000071 ORTHO05D000029 2.8e-06 56.2 78 44.9
GSVIVG01006675001 Vitis vinifera HOM05D000071 ORTHO05D022462 2.8e-06 56.2 68 47.1
Ciclev10027376m.g Citrus clementina HOM05D000071 ORTHO05D000029 3.7e-06 55.8 93 34.4
Eucgr.B03475 Eucalyptus grandis HOM05D000071 ORTHO05D000029 3.7e-06 55.8 88 38.6
Gohir.D11G308433 Gossypium hirsutum HOM05D000071 ORTHO05D000029 3.7e-06 55.8 93 32.3
Prupe.1G575500 Prunus persica HOM05D000071 ORTHO05D000029 3.7e-06 55.8 71 43.7
COL.COLO4_20374 Corchorus olitorius HOM05D000071 ORTHO05D000029 4.9e-06 55.5 58 44.8
Eucgr.B03474 Eucalyptus grandis HOM05D000071 ORTHO05D000029 4.9e-06 55.5 84 41.7
HanXRQChr14g0426821 Helianthus annuus HOM05D000071 ORTHO05D000029 4.9e-06 55.5 86 36.0
HanXRQChr14g0426831 Helianthus annuus HOM05D000071 ORTHO05D000029 4.9e-06 55.5 86 36.0
MD10G1223100 Malus domestica HOM05D000071 ORTHO05D000029 4.9e-06 55.5 114 36.8
MD17G1013300 Malus domestica HOM05D000071 ORTHO05D000029 4.9e-06 55.5 112 33.9
RcHm_v2.0_Chr1g0315251 Rosa chinensis HOM05D000071 ORTHO05D000029 4.9e-06 55.5 73 39.7
RcHm_v2.0_Chr6g0259721 Rosa chinensis HOM05D000071 ORTHO05D000029 4.9e-06 55.5 113 31.0
Ciclev10010467m.g Citrus clementina HOM05D000071 ORTHO05D000029 6.3e-06 55.1 93 33.3
Migut.N02337 Erythranthe guttata HOM05D000071 ORTHO05D000029 6.3e-06 55.1 70 44.3
Manes.06G154900 Manihot esculenta HOM05D000071 ORTHO05D000029 6.3e-06 55.1 71 42.3
RcHm_v2.0_Chr5g0020901 Rosa chinensis HOM05D000071 ORTHO05D000029 6.3e-06 55.1 84 39.3
RcHm_v2.0_Chr7g0208841 Rosa chinensis HOM05D000071 ORTHO05D000029 6.3e-06 55.1 113 33.6
CSS0047299 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 8.3e-06 54.7 80 40.0
Ciclev10010312m.g Citrus clementina HOM05D000071 ORTHO05D000029 8.3e-06 54.7 83 37.3
COL.COLO4_20700 Corchorus olitorius HOM05D000071 ORTHO05D000029 8.3e-06 54.7 87 42.5
RcHm_v2.0_Chr1g0315551 Rosa chinensis HOM05D000071 ORTHO05D000029 8.3e-06 54.7 73 41.1
RcHm_v2.0_Chr1g0354841 Rosa chinensis HOM05D000071 ORTHO05D000029 8.3e-06 54.7 79 44.3


User provided reference genes

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