Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 3.9e-155 552.0 410 100.0
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 9.5e-77 291.6 436 58.3
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 5.5e-48 196.1 437 44.2
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 4.9e-41 172.9 215 52.6
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 7.9e-39 165.6 458 45.4
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 1.9e-37 161.0 256 53.9
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 2.5e-37 160.6 419 38.4
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 5.7e-37 159.5 419 39.9
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 3.7e-36 156.8 433 48.3
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 1.8e-35 154.5 222 49.5
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 2.4e-35 154.1 276 40.9
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 3.1e-35 153.7 221 48.0
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.5e-34 151.4 212 49.5
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 4.5e-34 149.8 426 43.7
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 5.9e-34 149.4 488 42.6
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 5.9e-34 149.4 418 40.0
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 1.3e-33 148.3 209 49.8
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.7e-33 147.9 209 48.3
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 1.7e-33 147.9 215 45.1
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 2.2e-33 147.5 488 42.6
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.8e-33 146.7 239 47.3
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 5.0e-33 146.4 422 43.4
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.4e-32 144.8 422 44.1
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.9e-32 144.4 238 43.3
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 2.5e-32 144.1 192 49.0
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 3.2e-32 143.7 422 39.1
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 4.2e-32 143.3 196 49.0
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 5.5e-32 142.9 236 52.1
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 9.3e-32 142.1 300 40.7
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 1.6e-31 141.4 260 43.1
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 2.1e-31 141.0 435 43.7
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.7e-31 140.6 478 43.1
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 3.5e-31 140.2 210 44.8
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 3.5e-31 140.2 269 41.6
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 1.8e-30 137.9 212 43.9
FAN12G0333 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.9e-30 136.7 238 45.8
FvH4_4g01200 Fragaria vesca HOM05D004242 ORTHO05D004349 5.1e-30 136.3 238 46.2
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 6.7e-30 136.0 208 47.1
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 6.7e-30 136.0 291 37.8
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.9e-29 134.4 405 34.6
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 1.9e-29 134.4 245 38.8
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 5.7e-29 132.9 211 46.0
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 7.4e-29 132.5 202 46.0
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 7.4e-29 132.5 202 46.0
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.3e-28 131.7 493 35.7
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 1.6e-28 131.3 258 38.8
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 2.2e-28 131.0 434 38.9
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 6.3e-28 129.4 504 38.1
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 1.1e-27 128.6 310 43.2
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 1.4e-27 128.3 196 46.4
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 1.8e-27 127.9 192 45.8
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 3.1e-27 127.1 198 44.9
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 6.9e-27 125.9 208 44.2
FAN10G1700 Fragaria x ananassa HOM05D004242 ORTHO05D004349 9.0e-27 125.6 492 35.0
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 9.0e-27 125.6 290 40.0
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 4.5e-26 123.2 196 41.8
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 1.3e-25 121.7 428 37.6
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 3.2e-24 117.1 199 38.2
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 5.5e-24 116.3 197 45.2
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 7.2e-24 115.9 208 41.8
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 1.6e-23 114.8 213 40.8
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 2.7e-23 114.0 190 47.9
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 3.6e-23 113.6 196 41.3
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 4.6e-23 113.2 201 43.8
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 1.4e-22 111.7 203 41.4
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 6.7e-22 109.4 260 42.3
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 6.7e-22 109.4 200 43.5
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 6.7e-22 109.4 210 41.9
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 1.1e-21 108.6 264 32.6
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 1.1e-21 108.6 151 50.3
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 3.3e-21 107.1 127 47.2
AL4G46060 Arabidopsis lyrata HOM05D004242 ORTHO05D004349 5.7e-21 106.3 217 44.2
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 1.3e-20 105.1 208 41.3
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 1.7e-20 104.8 216 39.8
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 1.7e-20 104.8 209 42.6
Thhalv10001731m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 1.7e-20 104.8 217 45.2
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 1.7e-20 104.8 159 44.7
Sp4g28680 Schrenkiella parvula HOM05D004242 ORTHO05D004349 3.7e-20 103.6 217 45.6
A04p34530 Brassica napus HOM05D004242 ORTHO05D004349 6.3e-20 102.8 220 44.1
A05p01160 Brassica napus HOM05D004242 ORTHO05D004349 6.3e-20 102.8 216 40.7
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 6.3e-20 102.8 143 45.5
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 6.3e-20 102.8 143 51.7
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 8.2e-20 102.4 448 33.0
BraA04t18910Z Brassica rapa HOM05D004242 ORTHO05D004349 1.1e-19 102.1 220 43.6
C04p72290 Brassica napus HOM05D004242 ORTHO05D004349 1.4e-19 101.7 220 44.5
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 1.4e-19 101.7 206 38.8
BolC4t28717H Brassica oleracea HOM05D004242 ORTHO05D004349 1.8e-19 101.3 220 44.5
BcaC02g12660 Brassica carinata HOM05D004242 ORTHO05D004349 2.4e-19 100.9 216 41.2
C04p01320 Brassica napus HOM05D004242 ORTHO05D004349 2.4e-19 100.9 216 41.2
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 3.1e-19 100.5 267 34.8
THA.LOC104817612 Tarenaya hassleriana HOM05D004242 ORTHO05D004349 4.1e-19 100.1 208 43.3
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 5.3e-19 99.8 173 39.9
BolC4t21785H Brassica oleracea HOM05D004242 ORTHO05D004349 6.9e-19 99.4 217 42.4
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 6.9e-19 99.4 266 35.0
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 1.2e-18 98.6 201 37.3
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 1.5e-18 98.2 187 38.0
GSVIVG01027399001 Vitis vinifera HOM05D004242 ORTHO05D004349 2.6e-18 97.4 195 40.0
DCAR_002987 Daucus carota HOM05D004242 ORTHO05D004349 3.4e-18 97.1 211 41.2
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 1.3e-17 95.1 227 35.2
Sed0006480 Sechium edule HOM05D004242 ORTHO05D004349 1.7e-17 94.7 272 37.5
CARHR141970 Cardamine hirsuta HOM05D004242 ORTHO05D004349 3.8e-17 93.6 212 41.5
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 8.5e-17 92.4 201 38.8
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 1.1e-16 92.0 446 32.5
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 1.4e-16 91.7 207 34.3
Carub.0004s2934 Capsella rubella HOM05D004242 ORTHO05D004349 1.4e-16 91.7 219 43.4
BcaC02g07046 Brassica carinata HOM05D004242 ORTHO05D004349 2.5e-16 90.9 146 54.1
CiPaw.02G043000 Carya illinoinensis HOM05D004242 ORTHO05D004349 2.5e-16 90.9 107 47.7
arahy.Tifrunner.gnm1.ann1.YBIH8U Arachis hypogaea HOM05D004242 ORTHO05D004349 4.2e-16 90.1 160 38.1
BcaC02g12659 Brassica carinata HOM05D004242 ORTHO05D004349 4.2e-16 90.1 416 37.7
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 4.2e-16 90.1 413 27.1
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 5.5e-16 89.7 202 38.1
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 9.4e-16 89.0 157 38.2
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 1.6e-15 88.2 118 47.5
GSVIVG01027401001 Vitis vinifera HOM05D004242 ORTHO05D004349 3.6e-15 87.0 193 37.8
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 1.8e-14 84.7 413 31.7
Nn4g22396 Nelumbo nucifera HOM05D004242 ORTHO05D004349 2.3e-14 84.3 207 40.6
Glyma.07G052632 Glycine max HOM05D004242 ORTHO05D004349 6.7e-14 82.8 216 35.6
MELO3C022249.2 Cucumis melo HOM05D004242 ORTHO05D004349 2.0e-13 81.3 424 33.3
Medtr8g027290 Medicago truncatula HOM05D004242 ORTHO05D004349 5.7e-13 79.7 141 41.1
BcaC07g42602 Brassica carinata HOM05D004242 ORTHO05D004349 7.4e-13 79.3 140 40.7
Aqoxy2G02545 Aquilegia oxysepala HOM05D004242 ORTHO05D004349 9.7e-13 79.0 182 41.8
C08p36720 Brassica napus HOM05D004242 ORTHO05D004349 2.8e-12 77.4 122 42.6
BolC8t51254H Brassica oleracea HOM05D004242 ORTHO05D004349 2.8e-12 77.4 122 42.6
CsaV3_3G007790 Cucumis sativus L. HOM05D004242 ORTHO05D004349 3.7e-12 77.0 144 34.7
Dinv34239 Davidia involucrata HOM05D004242 ORTHO05D004349 3.7e-12 77.0 121 43.0
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 3.7e-12 77.0 147 32.7
Thhalv10006210m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 4.8e-12 76.6 212 33.0
A09p53910 Brassica napus HOM05D004242 ORTHO05D004349 8.2e-12 75.9 139 39.6
BraA09t40807Z Brassica rapa HOM05D004242 ORTHO05D004349 8.2e-12 75.9 139 39.6
ECA236G3302 Erigeron canadensis HOM05D004242 ORTHO05D004349 8.2e-12 75.9 217 41.0
CDE02G1230 Ceratophyllum demersum HOM05D004242 ORTHO05D004349 1.1e-11 75.5 197 35.5
Lalb_Chr10g0100731 Lupinus albus HOM05D004242 ORTHO05D004349 1.8e-11 74.7 190 33.2
Sp5g01480 Schrenkiella parvula HOM05D004242 ORTHO05D004349 2.4e-11 74.3 207 30.4
MELO3C005995.2 Cucumis melo HOM05D004242 ORTHO05D004349 3.1e-11 73.9 139 33.8
Sed0022787 Sechium edule HOM05D004242 ORTHO05D004349 3.1e-11 73.9 174 33.9
Phvul.010G116800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 9.1e-11 72.4 189 31.7
ATR0796G195 Amborella trichopoda HOM05D004242 ORTHO05D004349 1.2e-10 72.0 204 31.4
Sed0012028 Sechium edule HOM05D004242 ORTHO05D004349 1.2e-10 72.0 210 29.5
VMungo0331G0257 Vigna mungo HOM05D004242 ORTHO05D004349 2.6e-10 70.9 194 32.5
Carub.0005s2862 Capsella rubella HOM05D004242 ORTHO05D004349 4.5e-10 70.1 204 32.4
Dinv18906 Davidia involucrata HOM05D004242 ORTHO05D004349 5.9e-10 69.7 187 36.9
MELO3C005996.2 Cucumis melo HOM05D004242 ORTHO05D004349 7.7e-10 69.3 196 32.1
Sc01g0002380 Simmondsia chinensis HOM05D004242 ORTHO05D004349 1.7e-09 68.2 192 30.7
ECA240G3602 Erigeron canadensis HOM05D004242 ORTHO05D004349 2.9e-09 67.4 109 39.4
ClCG05G000580 Citrullus lanatus HOM05D004242 ORTHO05D004349 3.8e-09 67.0 136 31.6
ClCG05G000590 Citrullus lanatus HOM05D004242 ORTHO05D004349 3.8e-09 67.0 105 41.0
Glyma.07G052566 Glycine max HOM05D004242 ORTHO05D004349 3.8e-09 67.0 202 28.7
Sed0025990 Sechium edule HOM05D004242 ORTHO05D004349 3.8e-09 67.0 151 31.1
CsaV3_3G007800 Cucumis sativus L. HOM05D004242 ORTHO05D004349 1.1e-08 65.5 198 29.8
Sed0013414 Sechium edule HOM05D004242 ORTHO05D004349 1.1e-08 65.5 141 32.6
Lj3g0014324 Lotus japonicus HOM05D004242 ORTHO05D004349 1.5e-08 65.1 249 29.3
Nitab4.5_0000307g0130 Nicotiana tabacum HOM05D019980 ORTHO05D022204 1.5e-08 65.1 249 34.9
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.5e-08 65.1 210 28.6
ClCG05G000600 Citrullus lanatus HOM05D004242 ORTHO05D004349 1.9e-08 64.7 198 30.8
Glyma.16G021500 Glycine max HOM05D004242 ORTHO05D004349 1.9e-08 64.7 206 29.1
SEGI_05135 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 1.9e-08 64.7 114 36.0
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 4.2e-08 63.5 208 27.4
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 5.5e-08 63.2 106 34.0
Nitab4.5_0002527g0010 Nicotiana tabacum HOM05D019980 ORTHO05D022204 9.4e-08 62.4 124 34.7
VMungo0331G0491 Vigna mungo HOM05D004242 ORTHO05D004349 1.6e-07 61.6 105 39.0
MELO3C005997.2 Cucumis melo HOM05D004242 ORTHO05D004349 3.6e-07 60.5 205 26.8
Lj8P558T23 Lonicera japonica HOM05D012621 ORTHO05D004349 3.6e-07 60.5 117 35.0
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 6.1e-07 59.7 109 33.9
VMungo0331G0961 Vigna mungo HOM05D004242 ORTHO05D004349 1.4e-06 58.5 194 32.0
CAN.G1415.1 Capsicum annuum HOM05D019980 ORTHO05D022204 3.0e-06 57.4 139 36.7
Lj8P558T18 Lonicera japonica HOM05D012621 ORTHO05D004349 3.0e-06 57.4 118 33.1
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 5.2e-06 56.6 110 33.6
Solyc01g096250.2 Solanum lycopersicum HOM05D019980 ORTHO05D022204 5.2e-06 56.6 142 45.8
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 8.8e-06 55.8 126 28.6


User provided reference genes

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