Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_15614 Corylus avellana HOM05D005178 ORTHO05D006123 6.1e-124 447.6 242 100.0
CiPaw.01G071600 Carya illinoinensis HOM05D005178 ORTHO05D006123 3.4e-74 282.3 244 68.0
CANSAT56G4005 Cannabis sativa HOM05D005178 ORTHO05D006123 2.5e-69 266.2 243 64.2
QL04p059571 Quercus lobata HOM05D005178 ORTHO05D006123 7.4e-69 264.6 250 63.2
CiPaw.02G038200 Carya illinoinensis HOM05D005178 ORTHO05D006123 2.5e-61 239.6 242 59.5
Thecc.01G348100 Theobroma cacao HOM05D005178 ORTHO05D006123 3.1e-59 232.6 244 59.0
Gohir.D12G113800 Gossypium hirsutum HOM05D005178 ORTHO05D006123 1.5e-58 230.3 246 50.0
Nn7g37376 Nelumbo nucifera HOM05D005178 ORTHO05D006123 4.5e-58 228.8 236 53.0
Gohir.D11G099200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 1.7e-57 226.9 244 58.2
Gohir.A11G094200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 2.2e-57 226.5 244 58.2
Gorai.008G123300 Gossypium raimondii HOM05D005178 ORTHO05D006123 3.8e-57 225.7 246 49.6
Gorai.007G105400 Gossypium raimondii HOM05D005178 ORTHO05D006123 8.4e-57 224.6 244 57.8
Sabra02G0144400 Salix brachista HOM05D005178 ORTHO05D006123 3.2e-56 222.6 242 52.5
Dinv32550 Davidia involucrata HOM05D005178 ORTHO05D006123 9.3e-56 221.1 242 56.2
Dinv43890 Davidia involucrata HOM05D005178 ORTHO05D006123 3.5e-55 219.2 242 56.6
Duzib133G0451 Durio zibethinus HOM05D005178 ORTHO05D006123 1.0e-54 217.6 244 56.6
Duzib138G0021 Durio zibethinus HOM05D005178 ORTHO05D006123 6.7e-54 214.9 244 55.3
Hma1.2p1_2972F.1_g331100 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 1.5e-53 213.8 234 52.1
Manes.05G026400 Manihot esculenta HOM05D005178 ORTHO05D006123 1.9e-53 213.4 243 50.2
Nn1g01788 Nelumbo nucifera HOM05D005178 ORTHO05D006123 3.3e-53 212.6 234 49.1
Potri.002G167300 Populus trichocarpa HOM05D005178 ORTHO05D006123 3.3e-53 212.6 241 51.9
Hma1.2p1_0384F.1_g141000 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 5.7e-53 211.8 234 55.1
CsaV3_3G008390 Cucumis sativus L. HOM05D000050 ORTHO05D000380 1.3e-52 210.7 239 54.4
A05p01500 Brassica napus HOM05D005178 ORTHO05D006123 5.3e-51 205.3 257 51.8
BraA05t19146Z Brassica rapa HOM05D005178 ORTHO05D006123 5.3e-51 205.3 257 51.8
MELO3C006056.2 Cucumis melo HOM05D005178 ORTHO05D006123 1.2e-50 204.1 239 54.4
Ciclev10021837m.g Citrus clementina HOM05D005178 ORTHO05D006123 2.6e-50 203.0 240 57.1
Potri.014G094400 Populus trichocarpa HOM05D005178 ORTHO05D006123 4.5e-50 202.2 242 52.1
C04p01700 Brassica napus HOM05D005178 ORTHO05D006123 5.9e-50 201.8 257 51.4
BolC4t21822H Brassica oleracea HOM05D005178 ORTHO05D006123 5.9e-50 201.8 257 51.4
BcaC02g12521 Brassica carinata HOM05D005178 ORTHO05D006123 7.7e-50 201.4 256 51.2
C03p30470 Brassica napus HOM05D005178 ORTHO05D006123 7.2e-48 194.9 248 51.2
BolC3t15395H Brassica oleracea HOM05D005178 ORTHO05D006123 7.2e-48 194.9 248 51.2
PGR042G2135 Punica granatum HOM05D005178 ORTHO05D006123 1.2e-47 194.1 251 51.0
BcaC01g05079 Brassica carinata HOM05D005178 ORTHO05D006123 3.6e-47 192.6 250 52.8
RcHm_v2.0_Chr1g0358651 Rosa chinensis HOM05D005178 ORTHO05D006123 4.6e-47 192.2 245 50.2
AL4G45600 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 1.0e-46 191.0 249 46.6
Atru.chr5.616 Acer truncatum HOM05D005178 ORTHO05D006123 5.1e-46 188.7 244 50.4
Gohir.A08G126100 Gossypium hirsutum HOM05D005178 ORTHO05D006123 5.7e-45 185.3 234 47.9
MD07G1144100 Malus domestica HOM05D005178 ORTHO05D006123 1.7e-44 183.7 244 49.6
THA.LOC104802056 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 1.7e-44 183.7 249 51.4
AT2G46300 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 4.8e-44 182.2 249 46.2
Sed0008780 Sechium edule HOM05D005178 ORTHO05D006123 4.8e-44 182.2 240 51.2
Gohir.D08G147400 Gossypium hirsutum HOM05D005178 ORTHO05D006123 8.2e-44 181.4 243 44.9
ClCG08G003840 Citrullus lanatus HOM05D005178 ORTHO05D006123 1.4e-43 180.6 247 48.2
Lj1g0025938 Lotus japonicus HOM05D005178 ORTHO05D006123 3.1e-43 179.5 246 47.2
Gorai.004G153000 Gossypium raimondii HOM05D005178 ORTHO05D006123 4.1e-43 179.1 243 44.4
BcaB01g03231 Brassica carinata HOM05D005178 ORTHO05D006123 6.9e-43 178.3 247 49.4
BcaC01g05085 Brassica carinata HOM05D005178 ORTHO05D006123 6.9e-43 178.3 247 49.4
A03p25540 Brassica napus HOM05D005178 ORTHO05D006123 9.1e-43 177.9 248 50.0
BraA03t11771Z Brassica rapa HOM05D005178 ORTHO05D006123 9.1e-43 177.9 248 50.0
Thhalv10001596m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 1.5e-42 177.2 252 43.3
Rhsim07G0007300 Rhododendron simsii HOM05D005178 ORTHO05D006123 5.9e-42 175.3 239 48.5
CSS0038689 Camellia sinensis var. sinensis HOM05D005178 ORTHO05D006123 7.7e-42 174.9 237 48.9
Sed0019896 Sechium edule HOM05D005178 ORTHO05D006123 7.7e-42 174.9 245 47.3
Prupe.2G183000 Prunus persica HOM05D005178 ORTHO05D006123 1.0e-41 174.5 246 48.0
FvH4_7g15840 Fragaria vesca HOM05D005178 ORTHO05D006123 1.7e-41 173.7 246 43.9
MD01G1075000 Malus domestica HOM05D005178 ORTHO05D006123 1.7e-41 173.7 246 47.6
FAN06G0749 Fragaria x ananassa HOM05D005178 ORTHO05D006123 2.2e-41 173.3 246 43.9
FAN03G0560 Fragaria x ananassa HOM05D005178 ORTHO05D006123 6.5e-41 171.8 246 44.3
FAN06G4203 Fragaria x ananassa HOM05D005178 ORTHO05D006123 1.1e-40 171.0 245 44.1
MBI06_g02230_MAGBIO Magnolia biondii HOM05D005178 ORTHO05D006123 3.2e-40 169.5 241 49.0
FAN10G2759 Fragaria x ananassa HOM05D005178 ORTHO05D006123 7.2e-40 168.3 246 43.5
Lj7A504T56 Lonicera japonica HOM05D005178 ORTHO05D006123 1.6e-39 167.2 235 47.7
Aa31LG1G27670 Aethionema arabicum HOM05D005178 ORTHO05D006123 6.1e-39 165.2 238 42.4
MELO3C029922.2 Cucumis melo HOM05D005178 ORTHO05D006123 8.8e-38 161.4 250 44.8
FAN10G1950 Fragaria x ananassa HOM05D005178 ORTHO05D006123 1.1e-37 161.0 245 42.0
Sc01g0002990 Simmondsia chinensis HOM05D005178 ORTHO05D006123 1.5e-37 160.6 250 46.8
PSO384G3117 Papaver somniferum HOM05D005178 ORTHO05D006123 2.0e-37 160.2 234 45.3
CARHR141580 Cardamine hirsuta HOM05D005178 ORTHO05D006123 3.3e-37 159.5 248 41.9
Aqoxy7G00174 Aquilegia oxysepala HOM05D005178 ORTHO05D006123 4.4e-37 159.1 245 46.5
THA.LOC104817334 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 4.4e-37 159.1 245 44.9
Actinidia10100 Actinidia chinensis HOM05D005178 ORTHO05D006123 5.7e-37 158.7 237 46.4
Sp4g28340 Schrenkiella parvula HOM05D005178 ORTHO05D006123 2.2e-36 156.8 254 44.5
Ca_09491_v3 Cicer arietinum L. HOM05D005178 ORTHO05D006123 3.7e-36 156.0 239 45.6
TWI14G0215 Tripterygium wilfordii HOM05D005178 ORTHO05D006123 3.7e-36 156.0 242 40.9
PSO135G0875 Papaver somniferum HOM05D005178 ORTHO05D006123 4.8e-36 155.6 234 44.0
Carub.0004s2900 Capsella rubella HOM05D005178 ORTHO05D006123 7.0e-35 151.8 245 41.6
SHI13195 Sapria himalayana HOM05D005178 ORTHO05D006123 1.2e-34 151.0 240 38.8
BcaB03g13583 Brassica carinata HOM05D005178 ORTHO05D006123 4.5e-34 149.1 252 46.8
C05p00550 Brassica napus HOM05D005178 ORTHO05D006123 4.5e-34 149.1 252 46.8
A10p00520 Brassica napus HOM05D005178 ORTHO05D006123 7.7e-34 148.3 252 46.4
BolC5t28844H Brassica oleracea HOM05D005178 ORTHO05D006123 7.7e-34 148.3 252 46.8
BraA10t42331Z Brassica rapa HOM05D005178 ORTHO05D006123 1.0e-33 147.9 252 46.4
CsaV3_6G003970 Cucumis sativus L. HOM05D005178 ORTHO05D006123 2.2e-33 146.7 250 43.6
SGA_v2.0_scaffold11G05717 Striga asiatica HOM05D005178 ORTHO05D006123 2.2e-33 146.7 242 43.8
Medtr7g116930 Medicago truncatula HOM05D005178 ORTHO05D006123 2.9e-33 146.4 244 42.2
HPP92_005223 Vanilla planifolia HOM05D005178 ORTHO05D006123 5.0e-33 145.6 241 37.3
VMungo0540G0638 Vigna mungo HOM05D005178 ORTHO05D006123 6.5e-33 145.2 260 43.1
Phvul.006G110000 Phaseolus vulgaris HOM05D005178 ORTHO05D006123 8.5e-33 144.8 255 42.7
Sed0006216 Sechium edule HOM05D005178 ORTHO05D006123 3.2e-32 142.9 230 37.0
CAN.G1651.2 Capsicum annuum HOM05D005178 ORTHO05D006123 1.2e-31 141.0 234 42.7
Peaxi162Scf00403g00074 Petunia axillaris HOM05D005178 ORTHO05D006123 1.6e-31 140.6 237 44.3
Solyc10g011750.3 Solanum lycopersicum HOM05D005178 ORTHO05D006123 2.1e-31 140.2 236 41.9
Sopen10g005540 Solanum pennellii HOM05D005178 ORTHO05D006123 2.1e-31 140.2 236 41.9
AL1G10980 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 1.4e-30 137.5 247 40.1
Carub.0001s0080 Capsella rubella HOM05D005178 ORTHO05D006123 1.4e-30 137.5 251 43.0
Sabra14G0069000 Salix brachista HOM05D005178 ORTHO05D006123 1.8e-30 137.1 146 48.6
PGSC0003DMG400019400 Solanum tuberosum HOM05D005178 ORTHO05D006123 4.0e-30 136.0 237 42.2
Gohir.A12G110633 Gossypium hirsutum HOM05D005178 ORTHO05D006123 6.7e-30 135.2 142 50.0
Nitab4.5_0002262g0140 Nicotiana tabacum HOM05D005178 ORTHO05D006123 8.8e-30 134.8 241 43.2
CARHR000970 Cardamine hirsuta HOM05D005178 ORTHO05D006123 1.1e-29 134.4 247 39.7
Nitab4.5_0005619g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 1.1e-29 134.4 235 36.6
Thhalv10028895m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 1.5e-29 134.0 247 42.9
BcaB01g02336 Brassica carinata HOM05D005178 ORTHO05D006123 2.0e-29 133.7 244 43.9
BcaC01g06846 Brassica carinata HOM05D005178 ORTHO05D006123 3.3e-29 132.9 244 42.6
BolC3t16162H Brassica oleracea HOM05D005178 ORTHO05D006123 3.3e-29 132.9 244 42.6
Oeu008679.1 Olea europaea HOM05D005178 ORTHO05D006123 4.4e-29 132.5 167 40.7
AL6G52250 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 5.7e-29 132.1 248 44.8
Thhalv10009686m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 5.7e-29 132.1 250 44.0
Nitab4.5_0003779g0030 Nicotiana tabacum HOM05D005178 ORTHO05D006123 5.7e-29 132.1 235 42.1
THA.LOC104825868 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 7.5e-29 131.7 251 43.4
Sp6g01000 Schrenkiella parvula HOM05D005178 ORTHO05D006123 9.7e-29 131.3 248 44.0
CARHR249180 Cardamine hirsuta HOM05D005178 ORTHO05D006123 3.7e-28 129.4 248 42.3
A03p31890 Brassica napus HOM05D005178 ORTHO05D006123 4.8e-28 129.0 244 42.6
C03p38880 Brassica napus HOM05D005178 ORTHO05D006123 4.8e-28 129.0 244 40.2
Aa31LG1G10830 Aethionema arabicum HOM05D005178 ORTHO05D006123 1.1e-27 127.9 246 41.1
AT4G01110 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 1.1e-27 127.9 250 42.8
BcaC03g16062 Brassica carinata HOM05D005178 ORTHO05D006123 1.8e-27 127.1 249 43.8
Sp1g00860 Schrenkiella parvula HOM05D005178 ORTHO05D006123 1.8e-27 127.1 243 42.8
AT1G01453 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 2.4e-27 126.7 248 42.7
BraA02t07418Z Brassica rapa HOM05D005178 ORTHO05D006123 3.1e-27 126.3 249 43.8
C02p38280 Brassica napus HOM05D005178 ORTHO05D006123 7.0e-27 125.2 249 43.0
Glyma.03G255300 Glycine max HOM05D005178 ORTHO05D006123 7.0e-27 125.2 235 41.7
TPR.G4707 Trifolium pratense HOM05D005178 ORTHO05D006123 7.0e-27 125.2 239 42.7
BolC2t09843H Brassica oleracea HOM05D005178 ORTHO05D006123 9.1e-27 124.8 249 43.4
Aa31LG5G850 Aethionema arabicum HOM05D005178 ORTHO05D006123 4.5e-26 122.5 249 34.9
Glyma.19G252900 Glycine max HOM05D005178 ORTHO05D006123 4.5e-26 122.5 235 41.7
Carub.0006s3617 Capsella rubella HOM05D005178 ORTHO05D006123 1.3e-25 120.9 258 41.1
Peaxi162Scf00099g00191 Petunia axillaris HOM05D005178 ORTHO05D006123 1.3e-25 120.9 222 42.3
Lalb_Chr04g0261721 Lupinus albus HOM05D005178 ORTHO05D006123 2.5e-24 116.7 172 35.5
TAR375G0073 Trochodendron aralioides HOM05D005178 ORTHO05D006123 2.5e-24 116.7 107 57.9
vmacro13200 Vaccinium macrocarpon HOM05D005178 ORTHO05D006123 2.5e-24 116.7 197 48.2
HPP92_026775 Vanilla planifolia HOM05D005178 ORTHO05D006123 3.2e-24 116.3 246 36.6
BraA03t12361Z Brassica rapa HOM05D005178 ORTHO05D006123 2.1e-23 113.6 245 41.2
Nitab4.5_0000522g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 1.4e-22 110.9 220 36.4
A02p24280 Brassica napus HOM05D005178 ORTHO05D006123 8.8e-22 108.2 175 40.0
SalBow5G4166 Salvia bowleyana HOM05D005178 ORTHO05D006123 2.6e-21 106.7 241 34.9
BcaC01g05083 Brassica carinata HOM05D005178 ORTHO05D006123 2.8e-20 103.2 98 53.1
ATR1127G036 Amborella trichopoda HOM05D005178 ORTHO05D006123 6.5e-17 92.0 239 32.6
BcaC01g05087 Brassica carinata HOM05D001597 ORTHO05D001512 3.2e-16 89.7 206 41.3
AUR62004447 Chenopodium quinoa HOM05D005178 ORTHO05D006123 1.2e-15 87.8 120 44.2
AUR62023503 Chenopodium quinoa HOM05D005178 ORTHO05D006123 1.2e-15 87.8 120 43.3
TAR633G1539 Trochodendron aralioides HOM05D000050 ORTHO05D010482 2.1e-15 87.0 235 35.7
Psat3g003480 Pisum sativum HOM05D005178 ORTHO05D006123 3.4e-13 79.7 127 33.1
Os02g0261000 Oryza sativa ssp. japonica HOM05D058753 ORTHO05D006123 1.8e-11 73.9 176 30.1
Rhsim13G0058200 Rhododendron simsii HOM05D008517 ORTHO05D010482 2.4e-11 73.6 154 27.3
Nn5g26812 Nelumbo nucifera HOM05D008517 ORTHO05D010482 3.1e-11 73.2 152 28.3
CSS0025872 Camellia sinensis var. sinensis HOM05D002137 ORTHO05D002144 1.3e-09 67.8 153 27.5
SalBow6G2279 Salvia bowleyana HOM05D002137 ORTHO05D002144 6.6e-09 65.5 156 25.6
SalBow6G5101 Salvia bowleyana HOM05D002137 ORTHO05D002144 6.6e-09 65.5 156 25.6
Sopen03g040430 Solanum pennellii HOM05D002137 ORTHO05D002144 1.1e-08 64.7 173 26.0
PGSC0003DMG400002586 Solanum tuberosum HOM05D002137 ORTHO05D002144 1.9e-08 63.9 173 25.4
Solyc03g121620.1 Solanum lycopersicum HOM05D002137 ORTHO05D002144 3.3e-08 63.2 173 25.4
TWI34G1454 Tripterygium wilfordii HOM05D002137 ORTHO05D002144 1.6e-07 60.8 169 28.4
CSS0018299 Camellia sinensis var. sinensis HOM05D008517 ORTHO05D010482 2.1e-07 60.5 163 24.5
DCAR_007623 Daucus carota HOM05D002137 ORTHO05D002144 2.1e-07 60.5 151 24.5
CAN.G1389.23 Capsicum annuum HOM05D002137 ORTHO05D002144 2.8e-07 60.1 173 24.3
Peaxi162Scf00038g00154 Petunia axillaris HOM05D002137 ORTHO05D002144 3.6e-07 59.7 162 27.8
Rhsim11G0043800 Rhododendron simsii HOM05D002137 ORTHO05D002144 8.0e-07 58.5 155 26.5
TWI63G0827 Tripterygium wilfordii HOM05D002137 ORTHO05D002144 1.0e-06 58.2 170 27.6
CARHR123960 Cardamine hirsuta HOM05D008517 ORTHO05D010482 1.4e-06 57.8 193 24.9
CsaV3_7G034780 Cucumis sativus L. HOM05D002137 ORTHO05D002144 1.4e-06 57.8 202 26.2
MELO3C024389.2 Cucumis melo HOM05D002137 ORTHO05D002144 1.8e-06 57.4 192 25.5
Dinv27991 Davidia involucrata HOM05D002137 ORTHO05D002144 1.8e-06 57.4 154 26.0
Glyma.15G024400 Glycine max HOM05D002137 ORTHO05D002144 1.8e-06 57.4 164 26.8
Manes.11G026200 Manihot esculenta HOM05D002137 ORTHO05D002144 1.8e-06 57.4 216 29.6
Aa31LG5G6260 Aethionema arabicum HOM05D008517 ORTHO05D010482 3.0e-06 56.6 157 27.4
Cc08_g10660 Coffea canephora HOM05D002137 ORTHO05D002144 3.0e-06 56.6 155 25.2
Pp3c23_12930 Physcomitrium patens HOM05D000973 ORTHO05D003779 4.0e-06 56.2 211 25.6
HPP92_008777 Vanilla planifolia HOM05D002137 ORTHO05D002144 4.0e-06 56.2 152 25.0
Glyma.13G349900 Glycine max HOM05D002137 ORTHO05D002144 6.8e-06 55.5 160 26.2
PGSC0003DMG400029387 Solanum tuberosum HOM05D002137 ORTHO05D002144 8.9e-06 55.1 165 26.1


User provided reference genes

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