Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_15550 Corylus avellana HOM05D007525 ORTHO05D003398 1.8e-139 499.2 244 100.0
Cfa003884 Carpinus fangiana HOM05D007525 ORTHO05D003398 5.1e-102 374.8 239 77.8
CiPaw.01G065400 Carya illinoinensis HOM05D007525 ORTHO05D003398 1.4e-88 330.1 236 71.2
GSVIVG01026980001 Vitis vinifera HOM05D007525 ORTHO05D003398 1.6e-87 326.6 240 67.1
Atru.chr5.548 Acer truncatum HOM05D007525 ORTHO05D003398 2.9e-81 305.8 238 66.4
Manes.05G030450 Manihot esculenta HOM05D007525 ORTHO05D003398 1.4e-78 297.0 235 63.8
Potri.002G162800 Populus trichocarpa HOM05D007525 ORTHO05D003398 6.7e-78 294.7 242 64.0
Thecc.01G354100 Theobroma cacao HOM05D007525 ORTHO05D003398 1.5e-77 293.5 239 63.6
Sabra02G0147700 Salix brachista HOM05D007525 ORTHO05D003398 7.4e-77 291.2 246 62.6
TAR636G1192 Trochodendron aralioides HOM05D007525 ORTHO05D003398 1.7e-76 290.0 238 63.0
Actinidia10060 Actinidia chinensis HOM05D007525 ORTHO05D003398 2.8e-76 289.3 241 61.8
Cpa.g.sc184.25 Carica papaya HOM05D007525 ORTHO05D003398 1.8e-75 286.6 227 65.6
RcHm_v2.0_Chr1g0357281 Rosa chinensis HOM05D007525 ORTHO05D003398 1.2e-74 283.9 247 61.5
FvH4_7g15085 Fragaria vesca HOM05D007525 ORTHO05D003398 1.5e-74 283.5 240 62.1
Duzib133G0712 Durio zibethinus HOM05D007525 ORTHO05D003398 2.0e-74 283.1 239 62.3
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.3e-73 280.4 240 61.7
Gorai.001G158400 Gossypium raimondii HOM05D007525 ORTHO05D003398 5.0e-73 278.5 240 59.6
Gohir.D07G146200 Gossypium hirsutum HOM05D007525 ORTHO05D003398 6.5e-73 278.1 240 59.6
Nn1g01647 Nelumbo nucifera HOM05D007525 ORTHO05D003398 8.5e-73 277.7 239 61.5
Prupe.2G175600 Prunus persica HOM05D007525 ORTHO05D003398 1.4e-72 276.9 243 60.9
PGR042G3120 Punica granatum HOM05D007525 ORTHO05D003398 1.9e-72 276.6 241 59.8
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.5e-72 276.2 242 60.7
QL04p055069 Quercus lobata HOM05D007525 ORTHO05D003398 2.5e-72 276.2 369 46.1
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.2e-71 273.9 240 61.2
TWI59G1390 Tripterygium wilfordii HOM05D007525 ORTHO05D003398 4.7e-71 271.9 236 61.9
CSS0031135 Camellia sinensis var. sinensis HOM05D007525 ORTHO05D003398 3.9e-70 268.9 249 59.4
Gohir.A07G140800 Gossypium hirsutum HOM05D007525 ORTHO05D003398 1.1e-69 267.3 240 59.2
Oeu036594.1 Olea europaea HOM05D007525 ORTHO05D003398 2.0e-69 266.5 235 60.0
CANSAT56G0175 Cannabis sativa HOM05D007525 ORTHO05D003398 3.3e-69 265.8 235 62.1
Eucgr.E00102 Eucalyptus grandis HOM05D007525 ORTHO05D003398 1.4e-67 260.4 248 56.0
Lj7A509T109 Lonicera japonica HOM05D007525 ORTHO05D003398 7.0e-67 258.1 235 59.6
CsaV3_6G000860 Cucumis sativus L. HOM05D007525 ORTHO05D003398 1.2e-66 257.3 234 57.7
MELO3C021185.2 Cucumis melo HOM05D007525 ORTHO05D003398 1.5e-66 256.9 234 58.1
MD01G1069500 Malus domestica HOM05D007525 ORTHO05D003398 1.5e-66 256.9 242 57.9
Ciclev10022006m.g Citrus clementina HOM05D007525 ORTHO05D003398 2.0e-66 256.5 234 60.3
Nitab4.5_0010703g0010 Nicotiana tabacum HOM05D007525 ORTHO05D003398 2.6e-66 256.1 245 58.0
Nitab4.5_0000915g0170 Nicotiana tabacum HOM05D007525 ORTHO05D003398 4.5e-66 255.4 246 58.1
ClCG06G003450 Citrullus lanatus HOM05D007525 ORTHO05D003398 3.8e-65 252.3 248 56.5
MSTRG.4841 Avicennia marina HOM05D007525 ORTHO05D003398 1.1e-64 250.8 239 58.2
Solyc01g095000.3 Solanum lycopersicum HOM05D007525 ORTHO05D003398 1.9e-64 250.0 241 58.9
Sopen01g038780 Solanum pennellii HOM05D007525 ORTHO05D003398 5.5e-64 248.4 241 58.5
EL10Ac1g00368 Beta vulgaris HOM05D007525 ORTHO05D003398 5.2e-62 241.9 246 56.1
Migut.N01460 Erythranthe guttata HOM05D007525 ORTHO05D003398 6.7e-62 241.5 233 57.9
Peaxi162Scf00020g00126 Petunia axillaris HOM05D007525 ORTHO05D003398 6.7e-62 241.5 251 55.8
PGSC0003DMG400000187 Solanum tuberosum HOM05D007525 ORTHO05D003398 1.1e-61 240.7 245 57.1
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.6e-61 239.6 216 60.2
Aqoxy7G00302 Aquilegia oxysepala HOM05D007525 ORTHO05D003398 3.3e-61 239.2 211 61.6
Ca_03496_v3 Cicer arietinum L. HOM05D007525 ORTHO05D003398 5.7e-61 238.4 237 56.1
SGA_v2.0_scaffold43G16396 Striga asiatica HOM05D007525 ORTHO05D003398 5.7e-61 238.4 248 52.0
AUR62022606 Chenopodium quinoa HOM05D007525 ORTHO05D003398 9.7e-61 237.7 244 55.7
Psat4g157560 Pisum sativum HOM05D007525 ORTHO05D003398 9.7e-61 237.7 243 56.8
CAN.G78.117 Capsicum annuum HOM05D007525 ORTHO05D003398 3.7e-60 235.7 247 55.1
Rhsim07G0011500 Rhododendron simsii HOM05D001943 ORTHO05D001969 4.8e-60 235.3 209 59.3
Cc00_g17820 Coffea canephora HOM05D007525 ORTHO05D003398 1.4e-59 233.8 178 66.9
Lj3g0004891 Lotus japonicus HOM05D007525 ORTHO05D003398 1.4e-59 233.8 206 62.1
Lalb_Chr10g0096641 Lupinus albus HOM05D007525 ORTHO05D003398 1.4e-59 233.8 236 56.8
COL.COLO4_12762 Corchorus olitorius HOM05D007525 ORTHO05D003398 7.0e-59 231.5 216 59.3
VMungo0331G0679 Vigna mungo HOM05D007525 ORTHO05D003398 3.5e-58 229.2 237 54.4
Medtr8g028545 Medicago truncatula HOM05D007525 ORTHO05D003398 1.0e-57 227.6 207 59.9
Thhalv10001607m.g Eutrema salsugineum HOM05D007525 ORTHO05D003398 1.7e-57 226.9 230 53.0
SalBow5G0215 Salvia bowleyana HOM05D007525 ORTHO05D003398 1.9e-56 223.4 233 54.1
PSO478G5123 Papaver somniferum HOM05D007525 ORTHO05D003398 2.5e-56 223.0 237 53.6
vmacro13241 Vaccinium macrocarpon HOM05D007525 ORTHO05D003398 3.2e-56 222.6 175 65.1
AT2G46100 Arabidopsis thaliana HOM05D007525 ORTHO05D003398 4.2e-56 222.2 229 53.3
ATR0661G217 Amborella trichopoda HOM05D007525 ORTHO05D003398 1.2e-55 220.7 216 56.5
Carub.0004s2880 Capsella rubella HOM05D007525 ORTHO05D003398 2.1e-55 219.9 199 58.3
Ah.05g180250 Amaranthus hybridus HOM05D007525 ORTHO05D003398 6.1e-55 218.4 244 51.2
Aa31LG1G27510 Aethionema arabicum HOM05D005821 ORTHO05D006649 2.3e-54 216.5 238 52.1
AL4G45330 Arabidopsis lyrata HOM05D007525 ORTHO05D003398 4.0e-54 215.7 229 51.5
CDE12G0297 Ceratophyllum demersum HOM05D007525 ORTHO05D003398 5.2e-54 215.3 204 55.4
A05p06060 Brassica napus HOM05D007525 ORTHO05D003398 1.5e-53 213.8 206 57.3
C04p06980 Brassica napus HOM05D005821 ORTHO05D006649 4.4e-53 212.2 206 56.8
unitig_22.g6725 Utricularia gibba HOM05D007525 ORTHO05D003398 5.7e-53 211.8 200 57.5
BolC4t22319H Brassica oleracea HOM05D005821 ORTHO05D006649 3.7e-52 209.1 206 56.3
HanXRQChr03g0093451 Helianthus annuus HOM05D007525 ORTHO05D003398 3.1e-51 206.1 216 54.2
HPP92_021017 Vanilla planifolia HOM05D007525 ORTHO05D003398 4.1e-51 205.7 219 51.6
Zm00001eb073280 Zea mays HOM05D007525 ORTHO05D003398 2.7e-50 203.0 224 53.6
THA.LOC104817313 Tarenaya hassleriana HOM05D007525 ORTHO05D003398 5.0e-49 198.7 231 49.4
ECA240G1228 Erigeron canadensis HOM05D007525 ORTHO05D003398 9.4e-48 194.5 184 56.5
MBI04_g26962_MAGBIO Magnolia biondii HOM05D007525 ORTHO05D003398 2.7e-47 193.0 212 53.3
TPR.G28291 Trifolium pratense HOM05D007525 ORTHO05D003398 4.0e-46 189.1 174 60.9
Phvul.010G105000 Phaseolus vulgaris HOM05D007525 ORTHO05D003398 1.2e-45 187.6 214 51.4
Sp4g28160 Schrenkiella parvula HOM05D007525 ORTHO05D003398 2.0e-45 186.8 200 53.0
AUR62004400 Chenopodium quinoa HOM05D007525 ORTHO05D003398 1.2e-42 177.6 244 46.3
Lsat_1_v5_gn_3_138380 Lactuca sativa HOM05D007525 ORTHO05D003398 2.9e-41 172.9 163 60.7
Sed0025619 Sechium edule HOM05D007525 ORTHO05D003398 5.0e-41 172.2 131 67.2
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 6.1e-39 165.2 125 67.2
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 8.0e-39 164.9 174 54.6
Os04g0578200 Oryza sativa ssp. japonica HOM05D007525 ORTHO05D003398 5.2e-38 162.2 186 51.1
Glyma.16G031100 Glycine max HOM05D007525 ORTHO05D003398 4.4e-37 159.1 211 48.3
Sc23g0002640 Simmondsia chinensis HOM05D007525 ORTHO05D003398 5.9e-34 148.7 197 47.2
DCAR_025212 Daucus carota HOM05D001555 ORTHO05D001616 1.7e-33 147.1 131 56.5
Pp3c4_17920 Physcomitrium patens HOM05D007525 ORTHO05D003398 1.4e-27 127.5 173 41.0
Mapoly0153s0018 Marchantia polymorpha HOM05D007525 ORTHO05D003398 9.2e-27 124.8 203 37.9
CBR_g31994 Chara braunii HOM05D007525 ORTHO05D003398 2.3e-25 120.2 204 36.3
SMO358G0422 Selaginella moellendorffii HOM05D007525 ORTHO05D003398 5.2e-22 109.0 175 37.1
Zm00001eb250490 Zea mays HOM05D007525 ORTHO05D003398 3.4e-21 106.3 103 55.3
MCO05G605 Micromonas commoda HOM05D007525 ORTHO05D003398 4.4e-21 105.9 176 38.6
AagrBONN_evm.TU.Sc2ySwM_228.1193 Anthoceros agrestis HOM05D007525 ORTHO05D003398 2.2e-20 103.6 103 53.4
CARHR141360 Cardamine hirsuta HOM05D007525 ORTHO05D003398 1.9e-16 90.5 98 49.0
SEGI_20701 Sequoiadendron giganteum HOM05D007525 ORTHO05D003398 1.1e-14 84.7 68 57.4
Cre06.g292400 Chlamydomonas reinhardtii HOM05D007525 ORTHO05D003398 1.8e-14 84.0 181 29.8
TPR.G28505 Trifolium pratense HOM05D007525 ORTHO05D003398 6.8e-14 82.0 89 53.9
MBI04_g20814_MAGBIO Magnolia biondii HOM05D006905 ORTHO05D003398 8.3e-12 75.1 229 31.0
Potri.013G036500 Populus trichocarpa HOM05D006905 ORTHO05D003398 1.1e-11 74.7 201 30.3
PRCOL_00006625 Prasinoderma coloniale HOM05D007525 ORTHO05D003398 2.4e-11 73.6 170 30.0
TPR.G34652 Trifolium pratense HOM05D007525 ORTHO05D003398 3.2e-11 73.2 63 58.7
TPR.G20765 Trifolium pratense HOM05D007525 ORTHO05D003398 5.4e-11 72.4 68 55.9
Medtr4g037265 Medicago truncatula HOM05D007525 ORTHO05D003398 7.1e-11 72.0 37 81.1
Cfa006463 Carpinus fangiana HOM05D006905 ORTHO05D003398 2.7e-10 70.1 208 29.3
Mapoly0006s0024 Marchantia polymorpha HOM05D006905 ORTHO05D003398 2.7e-10 70.1 211 30.3
Pp3c24_12540 Physcomitrium patens HOM05D006905 ORTHO05D003398 4.6e-10 69.3 192 27.1
Mapoly0016s0115 Marchantia polymorpha HOM05D006905 ORTHO05D003398 1.7e-09 67.4 138 34.8
Mapoly0178s0027 Marchantia polymorpha HOM05D006905 ORTHO05D003398 1.7e-09 67.4 138 34.8
Duzib128G0775 Durio zibethinus HOM05D006905 ORTHO05D003398 3.0e-09 66.6 229 26.6
Cre10.g464250 Chlamydomonas reinhardtii HOM05D006905 ORTHO05D003398 3.9e-09 66.2 157 31.2
CsaV3_2G004310 Cucumis sativus L. HOM05D006905 ORTHO05D003398 3.9e-09 66.2 212 29.7
COL.COLO4_38037 Corchorus olitorius HOM05D006905 ORTHO05D003398 5.1e-09 65.9 180 30.0
Sed0006348 Sechium edule HOM05D006905 ORTHO05D003398 6.6e-09 65.5 213 30.0
TWI56G1496 Tripterygium wilfordii HOM05D006905 ORTHO05D003398 6.6e-09 65.5 135 31.1
Ciclev10002392m.g Citrus clementina HOM05D006905 ORTHO05D003398 8.6e-09 65.1 199 27.1
FvH4_6g03440 Fragaria vesca HOM05D006905 ORTHO05D003398 8.6e-09 65.1 204 29.9
PGR083G0691 Punica granatum HOM05D006905 ORTHO05D003398 8.6e-09 65.1 200 28.5
Dinv11554 Davidia involucrata HOM05D006905 ORTHO05D003398 1.1e-08 64.7 202 28.7
HanXRQChr12g0384101 Helianthus annuus HOM05D006905 ORTHO05D003398 1.1e-08 64.7 221 27.6
ECA246G1419 Erigeron canadensis HOM05D006905 ORTHO05D003398 1.5e-08 64.3 199 26.6
PGR083G1281 Punica granatum HOM05D006905 ORTHO05D003398 1.5e-08 64.3 200 28.0
Thecc.05G193600 Theobroma cacao HOM05D006905 ORTHO05D003398 1.5e-08 64.3 201 26.4
Cpa.g.sc117.65 Carica papaya HOM05D006905 ORTHO05D003398 1.9e-08 63.9 185 29.2
Solyc01g097820.4 Solanum lycopersicum HOM05D006905 ORTHO05D003398 1.9e-08 63.9 208 29.8
Sopen01g041420 Solanum pennellii HOM05D006905 ORTHO05D003398 1.9e-08 63.9 208 29.8
SGA_v2.0_scaffold5G02928 Striga asiatica HOM05D006905 ORTHO05D003398 1.9e-08 63.9 212 30.2
Aqoxy5G00478 Aquilegia oxysepala HOM05D006905 ORTHO05D003398 2.5e-08 63.5 186 30.1
vmacro05070 Vaccinium macrocarpon HOM05D006905 ORTHO05D003398 2.5e-08 63.5 222 27.0
CiPaw.07G006400 Carya illinoinensis HOM05D006905 ORTHO05D003398 3.3e-08 63.2 204 27.5
Migut.N01907 Erythranthe guttata HOM05D006905 ORTHO05D003398 3.3e-08 63.2 201 29.4
TAR636G1711 Trochodendron aralioides HOM05D006905 ORTHO05D003398 3.3e-08 63.2 195 29.2
Prupe.6G339800 Prunus persica HOM05D006905 ORTHO05D003398 4.3e-08 62.8 204 28.4
FAN02G2898 Fragaria x ananassa HOM05D006905 ORTHO05D003398 5.6e-08 62.4 204 28.4
Mapoly0059s0020 Marchantia polymorpha HOM05D006905 ORTHO05D003398 5.6e-08 62.4 138 33.3
QL03p024500 Quercus lobata HOM05D006905 ORTHO05D003398 5.6e-08 62.4 134 33.6
PGSC0003DMG400022508 Solanum tuberosum HOM05D006905 ORTHO05D003398 5.6e-08 62.4 196 29.6
FAN09G1595 Fragaria x ananassa HOM05D006905 ORTHO05D003398 7.3e-08 62.0 205 29.3
Zm00001eb036490 Zea mays HOM05D007525 ORTHO05D003398 9.5e-08 61.6 35 82.9
Atru.chr2.731 Acer truncatum HOM05D006905 ORTHO05D003398 1.2e-07 61.2 141 32.6
CANSAT54G0047 Cannabis sativa HOM05D006905 ORTHO05D003398 1.2e-07 61.2 205 27.3
Eucgr.L02187 Eucalyptus grandis HOM05D006905 ORTHO05D003398 1.2e-07 61.2 186 29.0
FAN05G2111 Fragaria x ananassa HOM05D006905 ORTHO05D003398 1.2e-07 61.2 205 27.8
ATR0737G167 Amborella trichopoda HOM05D006905 ORTHO05D003398 1.6e-07 60.8 228 30.3
Eucgr.B01715 Eucalyptus grandis HOM05D006905 ORTHO05D003398 1.6e-07 60.8 194 28.4
FAN14G2439 Fragaria x ananassa HOM05D006905 ORTHO05D003398 1.6e-07 60.8 205 27.8
Lalb_Chr06g0167991 Lupinus albus HOM05D006905 ORTHO05D003398 1.6e-07 60.8 189 28.0
MD04G1220800 Malus domestica HOM05D006905 ORTHO05D003398 1.6e-07 60.8 203 28.6
arahy.Tifrunner.gnm1.ann1.PI1FXK Arachis hypogaea HOM05D006905 ORTHO05D003398 2.1e-07 60.5 128 30.5
VMungo0720G0828 Vigna mungo HOM05D006905 ORTHO05D003398 2.1e-07 60.5 194 28.4
BraA05t22982Z Brassica rapa HOM05D006905 ORTHO05D003398 2.8e-07 60.1 200 27.5
THA.LOC104802823 Tarenaya hassleriana HOM05D006905 ORTHO05D003398 2.8e-07 60.1 132 29.5
TPR.G11158 Trifolium pratense HOM05D006905 ORTHO05D003398 2.8e-07 60.1 244 25.4
Atru.chr2.743 Acer truncatum HOM05D006905 ORTHO05D003398 3.6e-07 59.7 131 33.6
Lsat_1_v5_gn_3_28040 Lactuca sativa HOM05D006905 ORTHO05D003398 3.6e-07 59.7 194 25.8
Manes.09G156000 Manihot esculenta HOM05D006905 ORTHO05D003398 4.7e-07 59.3 202 29.2
Nitab4.5_0002361g0060 Nicotiana tabacum HOM05D006905 ORTHO05D003398 4.7e-07 59.3 196 29.1
GSVIVG01021847001 Vitis vinifera HOM05D006905 ORTHO05D003398 4.7e-07 59.3 205 27.3
Nitab4.5_0013433g0040 Nicotiana tabacum HOM05D006905 ORTHO05D003398 6.2e-07 58.9 196 29.1
Peaxi162Scf00404g00025 Petunia axillaris HOM05D006905 ORTHO05D003398 8.1e-07 58.5 179 31.3
CAN.G134.166 Capsicum annuum HOM05D006905 ORTHO05D003398 1.1e-06 58.2 197 27.9
RcHm_v2.0_Chr3g0451941 Rosa chinensis HOM05D006905 ORTHO05D003398 1.4e-06 57.8 203 26.6
Haze_04329 Corylus avellana HOM05D006905 ORTHO05D003398 1.8e-06 57.4 119 36.1
A05p42710 Brassica napus HOM05D006905 ORTHO05D003398 2.4e-06 57.0 167 28.1
Gorai.004G263200 Gossypium raimondii HOM05D006905 ORTHO05D003398 2.4e-06 57.0 133 29.3
Glyma.10G160600 Glycine max HOM05D006905 ORTHO05D003398 3.1e-06 56.6 189 28.6
Phvul.007G186100 Phaseolus vulgaris HOM05D006905 ORTHO05D003398 3.1e-06 56.6 213 27.2
Rhsim07G0175500 Rhododendron simsii HOM05D006905 ORTHO05D003398 3.1e-06 56.6 223 28.3
BolC5t34896H Brassica oleracea HOM05D006905 ORTHO05D003398 4.0e-06 56.2 128 28.9
Gohir.D08G246700 Gossypium hirsutum HOM05D006905 ORTHO05D003398 5.2e-06 55.8 135 28.9
Nn4g26306 Nelumbo nucifera HOM05D006905 ORTHO05D003398 5.2e-06 55.8 191 28.3
AL3G15180 Arabidopsis lyrata HOM05D006905 ORTHO05D003398 6.8e-06 55.5 129 27.9
CARHR079160 Cardamine hirsuta HOM05D006905 ORTHO05D003398 6.8e-06 55.5 129 28.7
Actinidia30925 Actinidia chinensis HOM05D006905 ORTHO05D003398 8.9e-06 55.1 138 29.7
Carub.0003s0409 Capsella rubella HOM05D006905 ORTHO05D003398 8.9e-06 55.1 129 27.9
Lj5g0004067 Lotus japonicus HOM05D006905 ORTHO05D003398 8.9e-06 55.1 117 35.0
SEGI_10814 Sequoiadendron giganteum HOM05D006905 ORTHO05D003398 8.9e-06 55.1 140 28.6


User provided reference genes

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