Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 5.8e-225 783.9 392 100.0
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 1.5e-204 716.1 409 89.5
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 4.1e-170 601.7 422 76.8
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 5.4e-162 574.7 419 72.8
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 4.9e-155 551.6 415 70.8
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 5.1e-152 541.6 415 68.9
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 6.6e-152 541.2 415 68.9
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 4.3e-151 538.5 386 72.3
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 5.6e-151 538.1 420 68.8
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 9.5e-151 537.3 419 67.8
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 2.8e-150 535.8 404 70.8
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.6e-150 535.4 418 67.5
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 8.9e-149 530.8 409 67.2
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 1.2e-148 530.4 409 68.2
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 2.0e-148 529.6 419 66.6
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 2.0e-148 529.6 423 67.1
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.6e-148 529.3 418 66.7
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 5.8e-148 528.1 418 66.5
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 5.8e-148 528.1 409 68.7
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.3e-147 526.9 419 66.1
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 1.7e-147 526.6 415 67.2
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.7e-147 525.4 419 66.3
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 4.9e-147 525.0 417 66.9
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 6.4e-147 524.6 420 65.0
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 8.4e-147 524.2 411 67.4
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 1.1e-146 523.9 419 68.0
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 1.2e-145 520.4 397 68.3
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.6e-145 520.0 409 67.5
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 7.8e-145 517.7 408 66.7
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 5.1e-144 515.0 423 64.5
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 1.5e-143 513.5 409 66.3
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.2e-142 510.4 413 65.1
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 1.6e-142 510.0 398 67.8
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 3.6e-142 508.8 408 65.2
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 1.8e-141 506.5 407 66.3
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 1.8e-141 506.5 395 67.8
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 2.4e-141 506.1 415 65.5
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 8.9e-141 504.2 406 65.8
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 1.5e-140 503.4 401 64.6
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 7.6e-140 501.1 407 64.4
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 9.9e-140 500.7 405 64.9
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 1.3e-139 500.4 405 66.2
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 2.9e-139 499.2 333 75.1
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 4.9e-139 498.4 404 65.8
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 2.4e-138 496.1 410 65.6
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 5.4e-138 495.0 423 61.7
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 7.1e-138 494.6 407 65.1
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 1.2e-137 493.8 404 65.3
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 4.6e-137 491.9 411 65.5
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 3.0e-136 489.2 397 62.5
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 6.6e-136 488.0 411 65.0
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 1.1e-135 487.3 413 60.8
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 2.5e-135 486.1 418 63.2
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 2.5e-135 486.1 413 63.0
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 4.3e-135 485.3 410 61.0
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 1.6e-134 483.4 398 61.6
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 1.6e-134 483.4 398 61.6
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 1.6e-134 483.4 359 69.1
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 1.6e-134 483.4 395 65.3
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 2.1e-134 483.0 407 60.9
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 2.8e-134 482.6 394 62.2
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 2.8e-134 482.6 409 63.6
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 3.6e-134 482.3 394 61.9
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 3.6e-134 482.3 361 66.2
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 4.8e-134 481.9 401 64.3
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 6.2e-134 481.5 404 63.4
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 1.1e-133 480.7 416 60.1
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 1.8e-133 479.9 405 60.5
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 2.4e-133 479.6 399 61.9
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 2.4e-133 479.6 399 61.9
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 9.0e-133 477.6 373 63.0
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 2.0e-132 476.5 413 61.5
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 7.6e-132 474.6 394 60.4
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 8.4e-131 471.1 417 60.4
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 1.1e-130 470.7 407 62.2
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 1.1e-130 470.7 406 61.8
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 1.4e-130 470.3 409 59.7
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 3.2e-130 469.2 429 60.6
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 3.2e-130 469.2 429 60.8
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 7.1e-130 468.0 413 62.2
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 1.2e-129 467.2 401 60.6
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 2.1e-129 466.5 400 61.0
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 3.5e-129 465.7 468 55.3
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 4.6e-129 465.3 407 61.4
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 7.9e-129 464.5 403 60.0
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 7.9e-129 464.5 332 71.4
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 2.3e-128 463.0 360 64.2
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 6.7e-128 461.5 360 64.2
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 3.3e-127 459.1 406 59.1
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 5.6e-127 458.4 399 61.4
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 1.3e-126 457.2 411 58.6
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 2.8e-126 456.1 400 60.2
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 3.6e-126 455.7 403 59.1
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 4.8e-126 455.3 400 59.2
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 4.8e-126 455.3 394 60.4
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.1e-125 454.1 398 60.1
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 1.8e-125 453.4 334 68.6
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 9.0e-125 451.1 386 60.9
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 2.0e-124 449.9 335 68.4
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 5.8e-124 448.4 404 58.2
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 7.6e-124 448.0 383 61.4
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 2.2e-123 446.4 404 57.9
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 3.8e-123 445.7 404 57.9
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 1.1e-122 444.1 418 57.2
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 1.4e-122 443.7 404 57.9
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 1.2e-121 440.7 401 58.4
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 1.6e-121 440.3 404 57.7
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 2.4e-117 426.4 326 68.1
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 2.2e-115 419.9 333 64.9
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 3.5e-113 412.5 330 63.6
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 2.8e-110 402.9 394 59.6
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 8.2e-110 401.4 305 65.2
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 4.5e-108 395.6 393 55.5
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 5.9e-108 395.2 383 55.6
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.0e-104 384.4 358 57.0
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 1.1e-101 374.4 380 52.9
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 5.3e-101 372.1 337 55.5
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 5.9e-100 368.6 293 64.8
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 4.2e-98 362.5 353 54.4
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.5e-95 354.0 338 52.4
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 9.7e-95 351.3 280 67.5
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.2e-94 350.1 344 51.2
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 5.3e-93 345.5 408 50.5
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 4.2e-90 335.9 339 50.1
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 4.4e-87 325.9 284 57.4
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 1.3e-86 324.3 317 50.2
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 7.5e-79 298.5 317 53.0
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.7e-75 287.3 234 68.4
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 1.8e-64 250.8 236 57.2
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.0e-63 247.3 331 39.9
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 7.5e-63 245.4 223 58.7
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.3e-62 244.6 311 42.1
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 2.2e-62 243.8 336 38.1
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.4e-61 241.1 313 42.2
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 1.7e-59 234.2 155 78.7
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 6.6e-59 232.3 272 43.8
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.4e-56 224.6 313 36.7
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.0e-56 223.0 322 37.9
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 3.2e-53 213.4 199 57.8
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.2e-53 213.4 286 40.2
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.1e-53 213.0 302 36.8
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 3.5e-52 209.9 179 57.5
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 7.8e-52 208.8 300 36.7
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.3e-50 203.0 291 37.8
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.7e-46 191.0 268 37.3
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 9.2e-45 185.3 179 57.5
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 1.3e-43 181.4 316 35.8
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.9e-43 179.9 143 69.2
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 3.4e-39 166.8 138 61.6
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 1.4e-37 161.4 221 41.2
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.2e-37 160.2 328 30.5
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 6.0e-36 156.0 153 47.1
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.1e-35 152.9 341 29.9
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 8.6e-35 152.1 381 29.1
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 8.6e-35 152.1 314 31.8
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.3e-34 150.2 388 27.3
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.3e-34 149.8 342 30.1
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 8.4e-30 135.6 313 28.4
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.4e-29 134.8 299 28.4
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 2.7e-28 130.6 119 52.9
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 3.5e-28 130.2 81 82.7
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.1e-26 125.2 294 31.3
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 6.2e-25 119.4 77 76.6
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.1e-24 117.1 300 29.3
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.6e-23 114.0 324 27.2
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.9e-22 110.5 171 35.7
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 3.5e-20 103.6 351 25.6
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.6e-20 103.2 219 29.7
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 7.8e-20 102.4 314 26.8
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 5.1e-19 99.8 324 28.1
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.2e-17 92.8 116 37.9
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 1.4e-16 91.7 337 24.0
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 9.0e-16 89.0 101 50.5
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 3.4e-15 87.0 350 26.0
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 6.4e-14 82.8 299 26.8
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 2.1e-12 77.8 62 69.4
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.5e-10 71.6 147 33.3
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.4e-08 65.1 89 43.8


User provided reference genes

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