Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 0.0e+00 2658.6 1334 100.0
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 0.0e+00 2478.7 1311 95.6
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 0.0e+00 1877.1 1343 73.9
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 0.0e+00 1863.6 1333 72.9
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1560.8 1345 62.4
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 0.0e+00 1482.6 1339 60.3
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1482.2 1336 60.1
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1479.9 1340 59.4
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1466.4 1372 59.3
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1449.9 1357 58.1
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 0.0e+00 1448.3 1326 59.0
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 0.0e+00 1436.4 1350 58.4
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1405.2 1345 57.8
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 0.0e+00 1404.8 1344 58.0
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 0.0e+00 1404.8 1347 57.4
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 0.0e+00 1404.8 1345 56.4
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1401.3 1334 57.5
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1400.6 1339 57.3
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 0.0e+00 1396.3 1310 58.0
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1394.4 1326 58.1
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1389.0 1326 57.9
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 0.0e+00 1364.4 1350 55.3
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1356.3 1363 55.8
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 0.0e+00 1343.6 1364 55.6
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1342.8 1349 55.7
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1341.3 1348 55.9
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1336.6 1332 55.3
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 0.0e+00 1330.5 1339 54.4
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 0.0e+00 1325.8 1318 56.5
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1323.9 1333 55.1
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1313.9 1296 56.7
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 0.0e+00 1293.1 1247 57.3
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 0.0e+00 1241.5 1328 52.7
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 0.0e+00 1238.0 1507 48.5
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1223.0 1254 54.9
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 0.0e+00 1217.6 1353 51.5
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 0.0e+00 1210.7 1339 51.4
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 0.0e+00 1206.8 1320 52.0
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 0.0e+00 1204.1 1203 55.5
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 0.0e+00 1193.7 1362 51.2
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 0.0e+00 1184.1 1331 51.5
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 0.0e+00 1174.8 1300 51.9
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 0.0e+00 1168.3 1317 50.8
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 0.0e+00 1166.4 1331 49.4
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 0.0e+00 1147.9 1317 50.4
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 0.0e+00 1144.8 1317 49.9
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 0.0e+00 1138.6 1194 53.2
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 0.0e+00 1130.2 1299 49.6
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 0.0e+00 1127.1 1305 49.3
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 0.0e+00 1120.1 1335 47.7
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 0.0e+00 1117.8 1314 50.7
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 0.0e+00 1114.8 1335 47.7
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 0.0e+00 1108.6 1299 49.1
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 0.0e+00 1104.0 1322 49.2
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 0.0e+00 1100.9 1320 49.2
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 0.0e+00 1095.5 1296 48.5
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 0.0e+00 1095.1 1342 47.2
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 0.0e+00 1082.8 1325 46.8
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 0.0e+00 1079.7 1335 48.2
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 0.0e+00 1078.2 1336 46.1
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 0.0e+00 1078.2 1299 47.0
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 5.8e-309 1064.7 1330 45.6
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 1.9e-307 1059.7 1324 46.1
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 1.0e-305 1053.9 1309 46.4
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 3.0e-305 1052.4 1314 47.6
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 2.5e-304 1049.3 1236 47.7
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 2.2e-295 1019.6 1269 47.4
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 6.3e-287 991.5 1345 45.3
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 2.4e-286 989.6 1326 45.3
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 4.1e-286 988.8 1318 46.2
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 1.4e-281 973.8 1332 44.1
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 1.0e-276 957.6 1297 45.5
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 1.7e-268 930.2 1284 43.5
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 1.7e-263 913.7 1316 42.6
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 1.8e-257 893.6 1344 42.0
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 1.4e-246 857.4 1320 41.9
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 1.9e-246 857.1 1296 42.1
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 1.2e-245 854.4 1334 41.6
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 5.1e-228 795.8 687 64.0
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 1.5e-227 794.3 1321 39.8
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 1.1e-225 788.1 1076 43.5
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 1.0e-220 771.5 1334 38.6
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.9e-219 767.3 1305 40.5
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 9.6e-219 765.0 704 59.9
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 1.6e-218 764.2 1284 39.5
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.7e-207 727.6 1233 40.5
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 3.8e-199 699.9 1298 36.9
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 1.0e-196 691.8 701 55.8
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 1.5e-195 688.0 1212 38.4
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 1.6e-186 657.9 1233 36.0
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 1.0e-183 648.7 1251 36.7
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 5.5e-182 642.9 1264 35.5
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 5.5e-182 642.9 700 53.0
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 9.4e-182 642.1 645 53.0
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 1.1e-179 635.2 1229 36.3
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 2.9e-175 620.5 638 52.7
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 2.3e-164 584.3 567 55.4
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 4.7e-149 533.5 701 46.2
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 8.9e-140 502.7 782 42.7
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 2.4e-137 494.6 785 41.4
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 9.5e-134 482.6 704 43.5
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 1.0e-127 462.6 792 36.9
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 3.3e-110 404.4 912 34.9
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 1.7e-106 392.1 670 40.1
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 1.3e-101 375.9 660 39.4
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 6.9e-100 370.2 319 60.5
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 3.0e-95 354.8 835 31.4
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 5.8e-91 340.5 829 30.3
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 1.1e-76 293.1 899 30.7
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 3.4e-75 288.1 417 39.8
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 6.5e-66 257.3 966 26.7
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.5e-46 193.0 285 40.4
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 2.0e-46 192.6 585 31.1
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 3.7e-45 188.3 554 32.9
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 2.2e-42 179.1 277 39.4
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 3.7e-37 161.8 264 34.5
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 9.8e-30 137.1 381 27.3
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 3.5e-27 128.6 487 29.8
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 5.9e-27 127.9 110 59.1
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 2.3e-26 125.9 303 38.9
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 2.3e-26 125.9 303 38.9
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 3.8e-26 125.2 556 28.1
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 6.6e-26 124.4 562 27.6
Sabra05G0109200 Salix brachista HOM05D006144 ORTHO05D006357 2.5e-25 122.5 192 45.8
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 5.6e-25 121.3 545 28.8
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 8.0e-24 117.5 545 28.6
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 1.0e-23 117.1 392 26.8
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 1.4e-23 116.7 215 37.2
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 1.5e-22 113.2 532 28.4
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 1.5e-22 113.2 532 28.4
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 3.7e-21 108.6 541 27.9
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 6.4e-21 107.8 142 39.4
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 2.4e-20 105.9 545 27.3
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 5.4e-20 104.8 550 25.1
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 1.1e-17 97.1 370 24.9
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 3.3e-17 95.5 164 39.0
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 3.6e-16 92.0 554 26.4
GSVIVG01002722001 Vitis vinifera HOM05D006144 ORTHO05D006357 6.2e-16 91.3 86 57.0
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 8.9e-15 87.4 298 26.5
TPR.G19009 Trifolium pratense HOM05D006144 ORTHO05D006357 8.9e-15 87.4 116 43.1
Sc11g0005350 Simmondsia chinensis HOM05D006144 ORTHO05D006357 2.7e-11 75.9 135 34.1
Medtr8g079870 Medicago truncatula HOM05D006144 ORTHO05D006357 8.6e-10 70.9 80 50.0
SEGI_01818 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 4.7e-08 65.1 90 44.4


User provided reference genes

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